Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_08g0404700 OGI:08056720 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr08:19334992-19339586
Gene Symbol -
DNA seq

CTAGCCGTAGACGACGTTGGAGATGAAGGCTCCGACGAGAGGCACCGCCAATCCCGTTGGGTCCCCGAACAGCACGCTGACGATGACGGAGATGGCGAAGTTGAGGAAGCATTTCACCGCCTTGCCAGTCCTGGACCGCTTCCGCTTCTTCATCGTCTTCTCCAGGATGGAGACGCTGATGATGCTCCTGCCGCCACCATCGCCGCCGCCGCCGCCGTGGCCAGCAGCCAAGATCTCCTGCACCATCTCCTTCACGCACGCCACGTGCAGGTACATGGCCTCGCCGTCGTAGCACGAGCGGTAGGTCCAGACTTTGCGGCGCAGCGTCCGTGAGCAGCTGCAGCCACCGTCGTGTCAACCGGTATAAAACTCTCTGTCAACCTTCTCTTTTATCGTAATATCACGTATGTCCTGATATCAGCATTACTTAAAATTTTTTACATTTATATAAATAATGTTCTAGTACCTTTAAATTAAATATTTATACTCCATTAAAAGCCTATAGTGGTGGTAGTGAATTGGATACCCCTATTGCTTTGGTAGTTTTACAAATTGCCCTTGATATTTTCTGATATTGTGGAATAGCTCAACATTTAGTTCAAACAAGTGAATATAAATATAATCAAATAAGCAAATATGTAACACTAACCTGTTCTTTTCTCCAACAAAAGTTGGATTAAATTTTAGATACTCGTGGCACGCTTTTCAAACTGCTAAATGGTATGTTTCGTGTAAAAATTTTCTATATAAAAGTTGTTCTAAAATATCATATTAATCTATTTTTCAAGTTTAAAATAATTAAAACTCAATTAATCACACGTTATTACAACCTCATTTTACGTGAAACACTTAATCTTCATCTTCATCTTCAGGACATTCAAACACCAAGATATTTGATAAAAAAATATTTTGCCATGATATATTATGATAATTTTATTCTTCTAGCTTAAAGCATTGGTATTTTACGAGGTTGTAAAGTTATTGGTAATCAAGGCTATAAAATTTTAATCTTAATCCTATTCAAAACATCAAAAGTTATGAAACCGGAAGGAGTAGGTCCATTGTTTTTTCCACCGAAAATCGCTTCCGTATTTTTGCACCTGAAACGGATCCTTCGTTTACGCATTAGCGACGTGCGTGATACGCGAAAGCAGATAACGAAGCTCGCAGCAAACTCGAAAGAACACAATGCCTCCTCCTGCCCGACCTCACGATGACGATTCGCAAGCTCGTGCTCGACCTGAGGCCACACACAACGTACGTGCGCCTTCTCCTGCGCGAGACGACCGTGCGTCGCAGCCTTTTCGCTCATTCGCGTGCTCGCCTCCAATAAAAGAGAAGAAATATAATGACAATATACGGCAACATGTGTATTCTTCCATTGAGTACCCGGTGTTAGACTTGAACTTGTCGACTATAACACATTAACACCTCAACCCGGACACGAGCACGGAGCCACAGATGGGCGAAAGCGAAACAGAGGAAAGCAGAGCAGGGCAACTAGGGGCGGAGGCAGCATTTTAGCAAGAATAGGACTATAGCTATAAATTTTTTGTGTAAATTCTACCTAAATTTCAGTGTTTCTCCATTAAAAATTTTTGCCACGTGTGGAGCCCAAGCCCAAACTGCCCCACACGTGGCTCCGCCCCTGAGGGCAACACACAATGCACTAATACTGAACACGGAGCTTGGCGTCTCATCCGCGAAACAAAATTGGCATATTAATATGTATTTTTTTTTCTTGATGAACATGACACAATTTTCTGAATTCAGGAAAATAGCTACTCCCTCCGTTTCATAATTTAAGTCATTCTAGCATTTTCCACATTCATATTGATGTTAATGAATCTAGACATATATATTTATCAAGATTCATTAACATCAATATAAATACAGAAAATGCTAGAATGACTTACATTGTAAAACGGAGGAAGTATATAGGACTGTAATTGGCAACTGACATCAAGTCAACTACATACTTTGCGACCCTACACTCTTTTAGCTAGCGAAGACAACACAGCCAAGCAATGCAGTAATGCACTAGTTAAGTAGTTATCCCTAAAGTGAATTTATTAGCAAATAAAATTAATCTTACGGCATTAGACTACTAATAGTATCCGGTTTAGTAAGTTTTGGATAATTGTTAGGTCAAACTTTAAAATTTTGAACTATAAATAATTTTTAAAATATTTGTCTTTCAAATAGAGACATATATTTAGATTAGTCTCACAAGCAATTCAACAAAATCATATATCTGTTAAAAATATTATATATATTATAATAGAAAAAATAGTGTTCAAATTTATTTTTTTTAGAGACCGTGCTCTTGTTTAACAGGGCAATCAGTATTATCAAACCGAAGAGAGTAGCTTGCTAGCCGAAGAAGGGGAAGACGTGGTAGCGGTCGTAGAGCTCTTCGAAGACGTAGGAGACCTGGTTGCGTTCGTAGAGATCGCGGAGATTGTCGTCCTTAGGGTTGTTGAGGTTCCAGAGCTCCACCCTGCGATTGTCGCCGCTCTCGAGGTAGTCGTAGCGCCATAGCTTGTAGCCGCTGTCGTCCAGCACGACGAAGTCGCCGCACGCGCCGGCGAAGTCCACCGGCCTCTCGCGCTCGAACAGCATGTGGAAGTAGTAGAAGCCGACGTCGTCCACCGTCGCCTCGTGCACGCGCCGCCACGCCGGAGCGGCGACGCCGTCGTCCGTCGTCATCACCCACACGCCGTGCACGCCCACGCCGCCGTCGTGCGGATACGGGCTGCCGCTCTCGTCGCTGTCGTCGCGGACGTCGAACGCGCACATCCGGAGGCGCCCGCCGGTCGAGCCCAGCGACCGCTCCGCCCGCCCGATGGACCCCTCCGCCCTCGCGGGCTCGCGGACCACGGTGACTCGGCCGCCGGCGACGTCGTAGCGGAGGATGCGGCCGCGGTTGCGGCGGTGGGTCAGCCAGTAGAAGCACCCGCCGACGTGGATGCCCGGGGACGCGGGGCCGCCGCCGACGCTGCGTGCCAAGCCCTGGGTCCCCTGTTCGGGCAGCTCCTTCGTCTCCCACCTGCCGGTCGCCGACGTGAAGGTCTCGACGACCACGCGCCGGTGCCTGCAGCCGATGAGCACCACCGTGAAGTCTAGCCTCCCCGTCCCCGACGACGCATCGTCGTCGAGGTCGTCGTAGTGAAGGCCGGAGTTGATGCCGTGTTCCGGCGGGAGAGTGGATGGCGGGAGCTCGACCCAGCGGTTGGCCGCCGGGTCGCAGACGTAGTAGCAGCTCCGGCCGCGGGCCAGCAGGAGACGGCCGTGCGCCGCGACGATGGAGATGTCCAGCGCCGGGACGGTGCGCTCGAAGAAGGCGACGTGGTCGTCGTCGTCGTCGGCGTCCACGACTTCCAACCCCGGTGCCAGATGATCGGCAAATCGATCGGGCTCCTGCTCCGGCAGCGGTTCGTCGGCAGCTGAGGCATTCGGGATGAAGCTGCGGCGGTGGCTCTCGTGATACAAGCGAGTGGGCCGCTTGTACTTGTTCCGGATGGGGACGTGGACGGCGAGCTCGTCGGCGGGGTCGACGGCGACGAGGCTGAGGTGGGTGAACCCGAGCTTCCGCGGCTGGACGATGAGGGCGCGGGGGCGTTCGCCGGCGAGTGGCCGCGGGGAGAGGTGGCGGCAGAGGAACGTCGGCTGCGACAGGATCGCTCGCCACCGCGGGCACGCGGCGGCGAGGCGGTGCGCTGCTCTGGACGACAGGCTGCGCGAGATGTCTGATATGACGGCGTCGTCGGGTAGGTGCCGCCCGGCGGCGGCGGCGACGGCGGCGACGGCGCGAGCAAATCGTTGGTAATCTCTCATGGTGCTATGCTACACCAAGCTAGGTCTAAGATTAGTTTATTCGGAATGATATTTAGTTAGGTTCGGCCCATTTATCCACTGGCCCGATCCATAAATTCGTTGGTAGGCCGTGTTGGACCTGAACTTGGCGCCCTACACGGCTACGCCTGGACGCGAGCACAAATGGGTAAAAGAAAAAAAAAGAAAAGTTCACGTTAGGTCCCTTCATATGTCACCAAGTGTGAAATTCAACCCTAAACTGCAATAACATATATGCCGTGTCTCTCAACTCCTAAATTCAGTACAAATAAGATTACAAGATGTTTGGATAGTGGTTTTGATTGATGTGGCACTTATAGTCCCAAGAAACCATAAAACTCATATATCCGCGACTATCCACTATGGAATCCACGTCATCACTCTTGTTTTTTTTTCCCTCTTCTCTCCCTTCTTTCTTGGGGACCTCTGCCCTCCTGCTCGCCACCACCGGTCGACGCCGCCTCTCTCCTTCCTCGATACTCCATAGAGAATGATTCCTCGTTCCCGATGGGCGTCGCAGATGTCCCCTTGTTGGCTTGTTGCCGACAACGACGGTGGCGTCGCTGAGGCACCAGTCGCACATGCCGGCGCTGGCCCTCCGCCGGGTCCCCATCACTGTAGTAGTTGGTGAACAGTGGGTAAGTTTGTTGATTGCAGCACGTACGAGTGCTGGAAGTGGCGGCGGCGGGCGCAACGAGAGAGCTTGTTCAGATAACCGACATCGCCGCAAGAAGGAGACA

More
CDS seq

ATGGGGACCCGGCGGAGGGCCAGCGCCGGCATGTGCGACTGGTGCCTCAGCGACGCCACCGTCGTTGAGATGGTGCAGGAGATCTTGGCTGCTGGCCACGGCGGCGGCGGCGGCGATGGTGGCGGCAGGAGCATCATCAGCGTCTCCATCCTGGAGAAGACGATGAAGAAGCGGAAGCGGTCCAGGACTGGCAAGGCGGTGAAATGCTTCCTCAACTTCGCCATCTCCGTCATCGTCAGCGTGCTGTTCGGGGACCCAACGGGATTGGCGGTGCCTCTCGTCGGAGCCTTCATCTCCAACGTCGTCTACGGCTAG

Protein seq

MGTRRRASAGMCDWCLSDATVVEMVQEILAAGHGGGGGDGGGRSIISVSILEKTMKKRKRSRTGKAVKCFLNFAISVIVSVLFGDPTGLAVPLVGAFISNVVYG

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_08g0404700 OsNip_08t0404700-00 Chr08 19334992 19339586 - RAP2018-11-26
CDS seq

ATGGGGACCCGGCGGAGGGCCAGCGCCGGCATGTGCGACTGGTGCCTCAGCGACGCCACCGTCGTTGAGATGGTGCAGGAGATCTTGGCTGCTGGCCACGGCGGCGGCGGCGGCGATGGTGGCGGCAGGAGCATCATCAGCGTCTCCATCCTGGAGAAGACGATGAAGAAGCGGAAGCGGTCCAGGACTGGCAAGGCGGTGAAATGCTTCCTCAACTTCGCCATCTCCGTCATCGTCAGCGTGCTGTTCGGGGACCCAACGGGATTGGCGGTGCCTCTCGTCGGAGCCTTCATCTCCAACGTCGTCTACGGCTAG

More
Protein seq

MGTRRRASAGMCDWCLSDATVVEMVQEILAAGHGGGGGDGGGRSIISVSILEKTMKKRKRSRTGKAVKCFLNFAISVIVSVLFGDPTGLAVPLVGAFISNVVYG

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g31260 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os08g0404700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0015460 RBH 0.0 1.100268 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0015320 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0015250 RBH 0.0 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0015550 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0015350 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0306300 RBH 0 0.080714 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0015380 RBH 0.0 0.138274 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0328200 RBH 0.021964 0.390187 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0014850 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0014980 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0014890 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0015600 RBH 0.0 0.086964 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0015010 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G015100 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0015250 RBH 0.0 3.292865 0.0
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.