Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0376600 | OGI:08052240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:17672834-17674381 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATCTCTCTCATCAGGTGACACCGACGCGCGCCGCGCCGCGCCGTGCCACGCCCGTTCGTCCATGTCCTCGGCGGCGGTGGCGGCGGCGAAGCTCTGATCCATTGACTAGCTAGCTCGGCCATGCGCGAGTCCGTCGAGGAAGCCGTCCACCACGCCGTCGTCGCTGTCGCCGCCGCGGCGGTCGTGGCGCTGGCCGTCGCGCTGTTCCTGCTCTGGCGCAACAAGCGCGTGGCGAGAGCGGGCGGTGGCGCCGGCGGTGGTGGTGGTGGTGGTGATGGCGACGGTGGTGCGATTGCGGTTGCGGTGGCGCCGTTGCCGGTGGTCCCGCTGGCCGACGTGGAGCGCGCCACCGACGGGTTCCACCCGAGCAGGGTGATCGGGCAGGGGAGGCACTTCACCGTGTACGCGGCGGCGCCGGGGCTCGCCGCCAAGCGCATGCGGCCGCACCTCGTGCTCGGGGAGCCCGGCGGGCGGCGGTTCCCCGCCGCGCTCCGGTCGCTCGCCGTGCCGCCGCACCCCAACCTCGCCGGCATCGTCGGCCTCTCCGAGGGCCCCGGCGAGCGCGTCCTCATCGTGGAGCGGGCGTCCGCCGGGTCGGTCGGCCTCGACGCCCTCCTCTACCACGGCGGCACCGACGCGCCGCTGCTGCCGTGGCCGGAGCGCGCCGCGGTCGCCGCGGGCGCGGCGCGGGGGCTGGTGCACCTGCACGCGCACGGCGTGGCGCACGGCCGCGTCAGGCCACGCAACGTGCTCGTCGACGCGGCCGCCGCGGCGCGTGGCCCCTGCGGCGTCAGGGTCAGCGACTACGGGCTGTCCACCTTCCTCCACAGCGACGACGGCGACGGCGACGACCACGGCCGCCTGGACGCCCGCGCGGAGAACGACGTCTACATGTTCGGCGCGGTGCTCCTCCACCTCCTCACCGGCCGGCAATGGGACGGCGGCCGGCTGGCGCACTGGGCGCTCCCGCTGATACGCGCCGGCCCGCCGGCGCTGGCGGAGGTGCTCGACGAGCGCGCCGGCAAGCCGGCGGACAAGGCCGAGTCCCGCCTGCTCGCGCGGACGGCCAGGGTGGCGCTGGCGTGCGTGGCGAACGACGGGCGCAGCCGGCCGCGGATGGCGGAGGTGTCCGCCATCCTCGACGACGTGGAGGCGGCGTACCGGCGCCGCGGCAGGTCGCCGGAACACGACGTGGACGGCGGCGAGGAGCGGTTCAGTGGGTGCCTTCTCGCGCCGAGCCGGAGCGCGCACAGATCGGAGACGCTGCTCCGGCTTCCCGTGTGAGAACAGTGATGATTAATTGGATTCTTTGGCGTGTCAAGTGATCATCAGCTCATTAATTAGCTAGGAAATTCATACTCTAGAGATTATAAAATGTTCTTGTTTGGTAGAACATGGGATGAATTTTGGATAATATTTTCTCTCTTTTTTTTTTGCGTTAGTTTCTGTATCTGTATACATTGTAGTACGGAGTATTGTACTACGCAGACGTTGACTAGAATGTACAGAGTACTGAGTGCTTTTAATATATAGTGATTAAATTTCTG
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| CDS seq | ATGCGCGAGTCCGTCGAGGAAGCCGTCCACCACGCCGTCGTCGCTGTCGCCGCCGCGGCGGTCGTGGCGCTGGCCGTCGCGCTGTTCCTGCTCTGGCGCAACAAGCGCGTGGCGAGAGCGGGCGGTGGCGCCGGCGGTGGTGGTGGTGGTGGTGATGGCGACGGTGGTGCGATTGCGGTTGCGGTGGCGCCGTTGCCGGTGGTCCCGCTGGCCGACGTGGAGCGCGCCACCGACGGGTTCCACCCGAGCAGGGTGATCGGGCAGGGGAGGCACTTCACCGTGTACGCGGCGGCGCCGGGGCTCGCCGCCAAGCGCATGCGGCCGCACCTCGTGCTCGGGGAGCCCGGCGGGCGGCGGTTCCCCGCCGCGCTCCGGTCGCTCGCCGTGCCGCCGCACCCCAACCTCGCCGGCATCGTCGGCCTCTCCGAGGGCCCCGGCGAGCGCGTCCTCATCGTGGAGCGGGCGTCCGCCGGGTCGGTCGGCCTCGACGCCCTCCTCTACCACGGCGGCACCGACGCGCCGCTGCTGCCGTGGCCGGAGCGCGCCGCGGTCGCCGCGGGCGCGGCGCGGGGGCTGGTGCACCTGCACGCGCACGGCGTGGCGCACGGCCGCGTCAGGCCACGCAACGTGCTCGTCGACGCGGCCGCCGCGGCGCGTGGCCCCTGCGGCGTCAGGGTCAGCGACTACGGGCTGTCCACCTTCCTCCACAGCGACGACGGCGACGGCGACGACCACGGCCGCCTGGACGCCCGCGCGGAGAACGACGTCTACATGTTCGGCGCGGTGCTCCTCCACCTCCTCACCGGCCGGCAATGGGACGGCGGCCGGCTGGCGCACTGGGCGCTCCCGCTGATACGCGCCGGCCCGCCGGCGCTGGCGGAGGTGCTCGACGAGCGCGCCGGCAAGCCGGCGGACAAGGCCGAGTCCCGCCTGCTCGCGCGGACGGCCAGGGTGGCGCTGGCGTGCGTGGCGAACGACGGGCGCAGCCGGCCGCGGATGGCGGAGGTGTCCGCCATCCTCGACGACGTGGAGGCGGCGTACCGGCGCCGCGGCAGGTCGCCGGAACACGACGTGGACGGCGGCGAGGAGCGGTTCAGTGGGTGCCTTCTCGCGCCGAGCCGGAGCGCGCACAGATCGGAGACGCTGCTCCGGCTTCCCGTGTGA
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| Protein seq | MRESVEEAVHHAVVAVAAAAVVALAVALFLLWRNKRVARAGGGAGGGGGGGDGDGGAIAVAVAPLPVVPLADVERATDGFHPSRVIGQGRHFTVYAAAPGLAAKRMRPHLVLGEPGGRRFPAALRSLAVPPHPNLAGIVGLSEGPGERVLIVERASAGSVGLDALLYHGGTDAPLLPWPERAAVAAGAARGLVHLHAHGVAHGRVRPRNVLVDAAAAARGPCGVRVSDYGLSTFLHSDDGDGDDHGRLDARAENDVYMFGAVLLHLLTGRQWDGGRLAHWALPLIRAGPPALAEVLDERAGKPADKAESRLLARTARVALACVANDGRSRPRMAEVSAILDDVEAAYRRRGRSPEHDVDGGEERFSGCLLAPSRSAHRSETLLRLPV |
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| Function | Serine/threonine-protein kinase-like protein ACR4 [UniProtKB/Swiss-Prot:Q9LX29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0376600 | OsNip_08t0376600-01 | Chr08 | 17672834 | 17674381 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGCGAGTCCGTCGAGGAAGCCGTCCACCACGCCGTCGTCGCTGTCGCCGCCGCGGCGGTCGTGGCGCTGGCCGTCGCGCTGTTCCTGCTCTGGCGCAACAAGCGCGTGGCGAGAGCGGGCGGTGGCGCCGGCGGTGGTGGTGGTGGTGGTGATGGCGACGGTGGTGCGATTGCGGTTGCGGTGGCGCCGTTGCCGGTGGTCCCGCTGGCCGACGTGGAGCGCGCCACCGACGGGTTCCACCCGAGCAGGGTGATCGGGCAGGGGAGGCACTTCACCGTGTACGCGGCGGCGCCGGGGCTCGCCGCCAAGCGCATGCGGCCGCACCTCGTGCTCGGGGAGCCCGGCGGGCGGCGGTTCCCCGCCGCGCTCCGGTCGCTCGCCGTGCCGCCGCACCCCAACCTCGCCGGCATCGTCGGCCTCTCCGAGGGCCCCGGCGAGCGCGTCCTCATCGTGGAGCGGGCGTCCGCCGGGTCGGTCGGCCTCGACGCCCTCCTCTACCACGGCGGCACCGACGCGCCGCTGCTGCCGTGGCCGGAGCGCGCCGCGGTCGCCGCGGGCGCGGCGCGGGGGCTGGTGCACCTGCACGCGCACGGCGTGGCGCACGGCCGCGTCAGGCCACGCAACGTGCTCGTCGACGCGGCCGCCGCGGCGCGTGGCCCCTGCGGCGTCAGGGTCAGCGACTACGGGCTGTCCACCTTCCTCCACAGCGACGACGGCGACGGCGACGACCACGGCCGCCTGGACGCCCGCGCGGAGAACGACGTCTACATGTTCGGCGCGGTGCTCCTCCACCTCCTCACCGGCCGGCAATGGGACGGCGGCCGGCTGGCGCACTGGGCGCTCCCGCTGATACGCGCCGGCCCGCCGGCGCTGGCGGAGGTGCTCGACGAGCGCGCCGGCAAGCCGGCGGACAAGGCCGAGTCCCGCCTGCTCGCGCGGACGGCCAGGGTGGCGCTGGCGTGCGTGGCGAACGACGGGCGCAGCCGGCCGCGGATGGCGGAGGTGTCCGCCATCCTCGACGACGTGGAGGCGGCGTACCGGCGCCGCGGCAGGTCGCCGGAACACGACGTGGACGGCGGCGAGGAGCGGTTCAGTGGGTGCCTTCTCGCGCCGAGCCGGAGCGCGCACAGATCGGAGACGCTGCTCCGGCTTCCCGTGTGA
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| Protein seq | MRESVEEAVHHAVVAVAAAAVVALAVALFLLWRNKRVARAGGGAGGGGGGGDGDGGAIAVAVAPLPVVPLADVERATDGFHPSRVIGQGRHFTVYAAAPGLAAKRMRPHLVLGEPGGRRFPAALRSLAVPPHPNLAGIVGLSEGPGERVLIVERASAGSVGLDALLYHGGTDAPLLPWPERAAVAAGAARGLVHLHAHGVAHGRVRPRNVLVDAAAAARGPCGVRVSDYGLSTFLHSDDGDGDDHGRLDARAENDVYMFGAVLLHLLTGRQWDGGRLAHWALPLIRAGPPALAEVLDERAGKPADKAESRLLARTARVALACVANDGRSRPRMAEVSAILDDVEAAYRRRGRSPEHDVDGGEERFSGCLLAPSRSAHRSETLLRLPV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0334800 | SBH | 0.142329 | 0.582640 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28890 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0376600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014120 | RBH | 0.0 | 0.688922 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014340 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014150 | RBH | 0.0 | 2.648079 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0279200 | RBH | 0.0477575 | 6.7174875 | 0.0094015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014200 | RBH | 0.0 | 0.122597 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0301800 | RBH | 0.0359955 | 10.7023275 | 0.008467 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014450 | RBH | 0.000000 | 0.305105 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013810 | RBH | 0.0 | 0.531700 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013960 | RBH | 0.0 | 0.0 | 0.0 |
