Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0346500 | OGI:08044730 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:15710781-15716377 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGATTACTCGAGAAGGAAAAAAAATAAATAAAAAAAAATCGCTTGGCTTCCCCCCGTCTCCTTGCGCCTCCGCCCCCTACTCCGGCGAGCCGAGCCGCCGTCCGCCGCCGCCGCATCGCGAGTCCTTCCCTCGTCGGGCAGTCGCCTGCCCCAGGTTAGCAGCCTCCGCCTCCTCCTCCTCCTGCTCCCCCCTCGCGTCGCCACTCCCGGTGGGGGCGATCCGCTCGTATCCGTGGGTTGATGTTTCCTGCGTTTCTTGGCACCCGATTTATTGGCTGCTTGGGTGCTACACCCCGTACCAATCCGAGCGCTATGAGCTCACGCGCACTGGGGGACTCCGGCCTCCGGCACCTGGTCGGTGCGTACTGGCAGCTGAGATTGTTGTTGCTATGTATGTGAGATGCTTGTGTACATGTGGGTACTACTTTGGTAGCCACCTACTTGTGCCCCAGTTTCAGTAAATGTGCTCAATTTTAGGGGTTTTAGTCATTTTGTTGCTTGTGTAGTATCGTCATCTTGTGGTCGGAGGATGAGTATCGGCGCTCTTTCTTTGCAAATTGGAGTAGATTTAGCCCTTGAATGATGTATGGTGGCATGAGTTATTTTTAATGGTTTTAGTTTCGCTAGACCTGCCTGAAATGTAGTCTTACTGTCCTTCGGGAGATATGAGCACATAACTTGGGTGTATGTACTATGTAGGACAGTTTTTTTGGTACCATGGCCTTTATCTACTTGTTGAAAGTATAGTTGGAAAATTTATCTGTTAAAATTTCATGTACTGTGTAGGTGAGATGGTCCTACTGCAGCAATCTGCCGTTAATATGATCTTTTTTTTTGTCCTCAGGATATCAATTCAGCCACACATTCCCTACATCGTTGCTAGTTACACATGTAGCACCTCTGGTTGAAAGCCAATACTACTACTGCTACCTAATCCAAAGCAAGGGTAATGTATACCATGTTGCGCTTGTATTCCCAAGGATATGGTTGTTTAATCTTTGCATATGTCTTCCACCATTATATCGTTGATTTTGTAATAATTCGTCTATCAACATCTCACTTGTGTTGCTGACACCTTCCACAACAATTTATCACTAGTTTTTGAACAAAAGGTCTTATGAATCCAAATTCCAAGTGATAGCCTCTCCTAGAACTCTTCCGTTGTTACAGTGATTTTTAATTTAGACTGATGCAATGAATTACTTATCTAGTTTTCATTGGATGGAAAAGCTAAAATCTCAATTGTGCAGTCATGATAATTAAGTTGGTATCTGTCCTACTGGTAACTCTAAACTGTCGGTTTCAGTTTCAACTAATGAACTATCCTGTAGGGTTCAAAGCAATACAGGAAATCTGTTTTTTTTTTTTTTTTTGCCTCTCAAGCATTAAGTTGGTTTTCAAGTGTTAGCAGGCAGATAATAATTTTAGTGCTATTTTGCATCCATAGACTTGTGTTAGAGTAAAGTGTTCTGAAAATGTCTGTATACCCTGTACACCTCCAGCTTCACAAAAGAGCAAGTTGTGAAATTCTAATGGTGTATTAAGTTTTTGTTTTCTTTAATTACGAGATGACATATCATCTTATTAAATGTTTTACTTCCTGGATAAATCCAGTGCTGTAAATTCAGGTGATGAGCAAATGCAATGTATCAGCCAAATCCTATTTCCAGCAGTGGTCAGACTCATGGCAATCCTACTGCTCATGAGCAAATGGAGTTAGGGAACAATGCTATTGTCCCTAGTAACGGAGGGAACAATAACCCTAATATGGCGGCAAGACAGCGGTTACGTTGGACAAATGAGTTGCATGACCGTTTCGTGGAGGCTGTTACTCAGCTTGGTGGGCCTGATAGTATGTCCTCCATGATTCAACTCGTTTTTCCCTTTTTGTTGCTCCTTTTATAGTTTTATATTTTATCTAGTACGTAGAGTTAGAGAAGTTGGTTCTAGTATTATACATTACATGTTTGCAACTGTGGTGACTGTTTTTGATTTATAATATGCATTTGCTGTACTAAATGAAAACTATAAGCTTGACAAATATGACAATAGCACGATGGTAATATTCAAGATCTGAACCAAAATGAATGGAATGTAATGGGTATTGATCTATCTTTCCTCAAGACCATAAAAGCACACAAAAAAAAAAACACTTGCATCTATTCCACCATTTGATTTATTCCTGATTACTTCATCTTCTTGATATTGATCATCTTCCTTTAGAATTAGCTCTGTGAAATATGAGTTTTCCAAGGAGACATTGAATGAGCATGTGATCTGGAAATGGTGATTTATTGGGCAATTGAAAGAATTCTTTGATTCATGGTTTGCATGTAGTTTGCATGCATCCATGGGAAACCCTGATTCTTAATATGATTTGTGTTAAAAATGCAAACAGAGTAGTACAACATATGAACATGCTATTAATACTAAAATAAAATATATATTTGATATTCTCAACCTCCCTCTGCATATAGTAGTTTTATTGATTTTATTCCTTGTACACCACTTAATATTCACAGAATTCCTTTATATGCAACTCATGCCTTTCAAAGAACTTGTCAGCTCACAATGTTATGGAACCACTGTTTTTGAACTGCATAGTTTATTAAGTAGGTATGTCTACTTATAATGTAATTCCTCAATTGTGACAGGAGCCACTCCTAAGGGAGTTCTGAGAATTATGGGTGTGCCAGGACTGACAATATACCATGTGAAAAGTCACCTACAGGTAAAATTATTGCGAAACAAATGACCCTTTATCAGTTTGACCATCTATGGCATTTCTTCCTAACTTTTTGCCTGTTTGCTTTTATTTGTCTAGAAATACCGGCTTGCAAAGTACATTCCAGACCCTTCAGCTGATGGTAGGGGGCATTTGTATTCTACTAATCCTTTTAGATATGTCCAAGGAAGAACATATTTATATTATTATTTCACTTTATCTAATCTATATCCCTTGTGTAGACAACAAGGATGAAGATAAAGATCCAGGGAATCTGCTTTCTGCACTTGAAGGTTCATCGTAAGTTCAAATAACTCTACTCCGTTGGTCTTTGTGTTTACTTTTGAGAAACATGGATCTCACTACTAGTAATCAAGGAAAGGAAAAGGCTCAAGTCCAATGGTTTTCTTATGTGTTGATTTGTTCTGTTTAGTAGGTTAAACATAATTTACAGTTAACATCATCATCAAAATGCCTGATGGCATGGGAGAAAAGAAATACATTGCTGCATTTTATATTATTAGTAATGAAAATAAAGGAAGTATCAAGCAACTTGTTTGTAATGATCCAAAGTTTATTGGGGGTAAATACCATTTATATAGAGGCCAGATGGCATGTGGGGAGATTTCTATATTCTTATTTTTGCTGAATTAAAATGAAAACTTCCATCTCTCTATATTCTTATTTTTGTTTAGAGATTATCTCTAACAAATTGGACTAGAGATAAGTGAAATCTAAACTAAGGTGGAGATACCATAGAAATTAAACTAAATACTCCCTCCGGTCATAAATATTTGATGTTCGGACAAGGTTAACTCAAACTTAAAACTTTGACCATCAATAATCTCTCAGATGCTTACTTTTAAAGGTAAAATAATGTATATGTAGAATTGCCTTGATAAGTACTAGGTACTATCATAATCTTGTGAACTTATAAGATTTTATAGATAGACTTGTTCTAATATAAAATCGAATATCAAAGATTAAAAGATTTGACCGAAACTGTCATAACCATCAAATATTTATGACTAGAGGGAGTAGTAACTAAGTTATCAGGCAACTGTACTTACTGGAGATAATGTTGTTACTGTGAGCCTCCATTGTGCTGCAGCTGTTTCTGGAATTGCAGTAGTTCTGCAGTTATACCTACTAGAGTAGCTATCAAGCTTACCAGCATGTTCTTATCCTTCTATTTTTTGAATTTGCAATATATACTGTTTACATTGGCCTGATCATTGGCCTGATCTCATTACTTCTATAACCATGTGCCATTTGGTATAAGAAACTCATATTTTTACACTTCCGTTGCAGTGGAATGCAGATATCTGAAGCCCTGAAGCTGCAGATGGAGGTCCAGAAGCGGCTACATGAACAATTAGAGGTAAGCTCCTGCTGCACTAATATGAAGCACACTTTATGATATGAAACTCACAATTATTGATGTTTCTAGTTGAGTGATGTGTAATGTACCATCAACTAGATTATGGTGTTAATGTTGAGACTTGAGAATAATCCAATAAATAAAATCAAATCGTGGTTAAATTGTAAAAGGGATGCTAAATTCAATGGTGTTTTCTGGTGTACAGAAGTCTCAGTATGATATGGCAGTGGATTATGATGATCTCATTTGGTGCAACTGCTTTTAGACAATTTGGCGTTTGGCAAACTATTTTTCTTTTATTCTATGCAGCAAACGAAAATACTATTGTGTTCCAAAAATGTGCCACAGTTGAAGGAGACATGAATGTTGGATAACAATTTGATCTGTAACGCAAACTTAACCATTATAAGTTTTCAATGAAAAAAAAGAATAGAACACCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAACAACTGCAAATGGAGCCTAATGTGCCAGAATAATCTTGTATTAGATAGAATTCACAACACCAGTTTGTTAGTTGAACTAAATATTGTAATAATTGTACAGAATTGTTTTCATTTTGGAGCTTTGCTTCAGCAATAACCTAGGAGAGATTATGAATCTTACAGTTGTACAGTAAACTTAGAGTAATACTACGTACACAGAGTCTTCCTAGTATACAGCAATTGTTCTACTGAAGAAACCATGTGCAACTTTCTTGTGTAATCTGAACTAACAAACATCTCTTGCAGGTGCAAAGGCAGCTACAGCTGCGAATTGAGGCGCAGGGGAAGTATCTCCAGAAGATCATCGAAGAGCAGCAGCGTGTCATTGGTGCAGGAGCTTCCAGAGCCACGTCAAGCGAACAATTGCCTGACTCTGAGAAAACTAACCCACCAACTCCAGTACCAATTTCTGAATCTCCAGTTCAGGGTGCACCCCATAGCAAGAACAGTCAAAGCCAAGTTGAGCCGACGAAGAGCCCTTCGCATGATGATGCTCTCCCGTGTGGTGAACCTTTAACACCTGACTCCAGCTGCCGGCCTGGTTCACCGACGCTCAGCCCAAAGCATGAGCGTGCAGCCAAGAGACAGAGGGGCAGTGATGCAGGCGATGTCACAGCATTCGCAGATGGAGAATTTGTACTTCCACCAGGCATCTTTGAGTCAAGCACAGGATCCGAGTTCCAAGAATGTTCGATGCCTTATTCAGGCCATTAGCCTATGGTGCTCTGATCATCAGTCCATCACCTTGACAAAGCTTACATGGTAAGATTTCATCTGTAGCCGTTGGTAGATTTTGGCCTTGTCAACACAAATACCTTTAGACAGAGAGTCTAGGTTTCAAAAGGAAATTGGGCACATGACATGCAGAGTAGCTGTAATTCTTGCACTGTTGTTAGATGTTCATGGGGACTAATGTAACTGATATTTAATTAAAAAATATTATTTTAGAATGACTTATGTTATGCTTCATGCC
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| CDS seq | ATGTATCAGCCAAATCCTATTTCCAGCAGTGGTCAGACTCATGGCAATCCTACTGCTCATGAGCAAATGGAGTTAGGGAACAATGCTATTGTCCCTAGTAACGGAGGGAACAATAACCCTAATATGGCGGCAAGACAGCGGTTACGTTGGACAAATGAGTTGCATGACCGTTTCGTGGAGGCTGTTACTCAGCTTGGTGGGCCTGATAGAGCCACTCCTAAGGGAGTTCTGAGAATTATGGGTGTGCCAGGACTGACAATATACCATGTGAAAAGTCACCTACAGAAATACCGGCTTGCAAAGTACATTCCAGACCCTTCAGCTGATGACAACAAGGATGAAGATAAAGATCCAGGGAATCTGCTTTCTGCACTTGAAGGTTCATCTGGAATGCAGATATCTGAAGCCCTGAAGCTGCAGATGGAGGTCCAGAAGCGGCTACATGAACAATTAGAGGTGCAAAGGCAGCTACAGCTGCGAATTGAGGCGCAGGGGAAGTATCTCCAGAAGATCATCGAAGAGCAGCAGCGTGTCATTGGTGCAGGAGCTTCCAGAGCCACGTCAAGCGAACAATTGCCTGACTCTGAGAAAACTAACCCACCAACTCCAGTACCAATTTCTGAATCTCCAGTTCAGGGTGCACCCCATAGCAAGAACAGTCAAAGCCAAGTTGAGCCGACGAAGAGCCCTTCGCATGATGATGCTCTCCCGTGTGGTGAACCTTTAACACCTGACTCCAGCTGCCGGCCTGGTTCACCGACGCTCAGCCCAAAGCATGAGCGTGCAGCCAAGAGACAGAGGGGCAGTGATGCAGGCGATGTCACAGCATTCGCAGATGGAGAATTTGTACTTCCACCAGGCATCTTTGAGTCAAGCACAGGATCCGAGTTCCAAGAATGTTCGATGCCTTATTCAGGCCATTAG
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| Protein seq | MYQPNPISSSGQTHGNPTAHEQMELGNNAIVPSNGGNNNPNMAARQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRLAKYIPDPSADDNKDEDKDPGNLLSALEGSSGMQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQKIIEEQQRVIGAGASRATSSEQLPDSEKTNPPTPVPISESPVQGAPHSKNSQSQVEPTKSPSHDDALPCGEPLTPDSSCRPGSPTLSPKHERAAKRQRGSDAGDVTAFADGEFVLPPGIFESSTGSEFQECSMPYSGH |
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| Function | Myb family transcription factor PHL7 [UniProtKB/Swiss-Prot:Q9SJW0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0346500 | OsNip_08t0346500-00 | Chr08 | 15712423 | 15716161 | + | RAP2018-11-26 | ||
| CDS seq | ATGTATCAGCCAAATCCTATTTCCAGCAGTGGTCAGACTCATGGCAATCCTACTGCTCATGAGCAAATGGAGTTAGGGAACAATGCTATTGTCCCTAGTAACGGAGGGAACAATAACCCTAATATGGCGGCAAGACAGCGGTTACGTTGGACAAATGAGTTGCATGACCGTTTCGTGGAGGCTGTTACTCAGCTTGGTGGGCCTGATAGAGCCACTCCTAAGGGAGTTCTGAGAATTATGGGTGTGCCAGGACTGACAATATACCATGTGAAAAGTCACCTACAGAAATACCGGCTTGCAAAGTACATTCCAGACCCTTCAGCTGATGACAACAAGGATGAAGATAAAGATCCAGGGAATCTGCTTTCTGCACTTGAAGGTTCATCTGGAATGCAGATATCTGAAGCCCTGAAGCTGCAGATGGAGGTCCAGAAGCGGCTACATGAACAATTAGAGGTGCAAAGGCAGCTACAGCTGCGAATTGAGGCGCAGGGGAAGTATCTCCAGAAGATCATCGAAGAGCAGCAGCGTGTCATTGGTGCAGGAGCTTCCAGAGCCACGTCAAGCGAACAATTGCCTGACTCTGAGAAAACTAACCCACCAACTCCAGTACCAATTTCTGAATCTCCAGTTCAGGGTGCACCCCATAGCAAGAACAGTCAAAGCCAAGTTGAGCCGACGAAGAGCCCTTCGCATGATGATGCTCTCCCGTGTGGTGAACCTTTAACACCTGACTCCAGCTGCCGGCCTGGTTCACCGACGCTCAGCCCAAAGCATGAGCGTGCAGCCAAGAGACAGAGGGGCAGTGATGCAGGCGATGTCACAGCATTCGCAGATGGAGAATTTGTACTTCCACCAGGCATCTTTGAGTCAAGCACAGGATCCGAGTTCCAAGAATGTTCGATGCCTTATTCAGGCCATTAG
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| Protein seq | MYQPNPISSSGQTHGNPTAHEQMELGNNAIVPSNGGNNNPNMAARQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRLAKYIPDPSADDNKDEDKDPGNLLSALEGSSGMQISEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQKIIEEQQRVIGAGASRATSSEQLPDSEKTNPPTPVPISESPVQGAPHSKNSQSQVEPTKSPSHDDALPCGEPLTPDSSCRPGSPTLSPKHERAAKRQRGSDAGDVTAFADGEFVLPPGIFESSTGSEFQECSMPYSGH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0346500 | OsNip_08t0346500-01 | Chr08 | 15710781 | 15716377 | + | IsoSeq | ||
| CDS seq | AGGATTACTCGAGAAGGAAAAAAAATAAATAAAAAAAAATCGCTTGGCTTCCCCCCGTCTCCTTGCGCCTCCGCCCCCTACTCCGGCGAGCCGAGCCGCCGTCCGCCGCCGCCGCATCGCGAGTCCTTCCCTCGTCGGGCAGTCGCCTGCCCCAGGATATCAATTCAGCCACACATTCCCTACATCGTTGCTAGTTACACATGTAGCACCTCT
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| Protein seq | RITREGKKINKKKSLGFPPSPCASAPYSGEPSRRPPPPHRESFPRRAVACPRISIQPHIPYIVASYTCSTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.957802 | 1.965764 | 2.301165 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0299200 | RBH | 3.040518 | 2.454595 | 6.653647 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g25820 | RBH | 0.589338 | 1.243344 | 0.537848 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0346500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0012620 | RBH | 0.562088 | 5.525410 | 5.296462 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012750 | RBH | 0.159189 | 0.809706 | 1.994832 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012800 | RBH | 0.865715 | 3.922804 | 3.904859 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0012730 | RBH | 0.217118 | 0.126946 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012560 | RBH | 4.679803 | 9.737697 | 8.382842 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0242200 | RBH | 3.749034 | 6.9147265 | 13.3083995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012650 | RBH | 0.0 | 0.452483 | 0.622261 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0256800 | RBH | 6.9129 | 10.636846 | 32.9788035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012140 | RBH | 0.178123 | 0.224775 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012320 | RBH | 0.451754 | 2.252184 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012200 | RBH | 1.473252 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012990 | RBH | 0.688931 | 0.390303 | 1.223737 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012220 | RBH | 0.154721 | 2.921049 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012410 | RBH | 0.195980 | 1.667677 | 0.824996 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012350 | RBH | 1.210180 | 5.455512 | 5.853301 |
