Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g032249A | OGI:08041020 | 2/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:14012399-14017518 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGGACGGAGAATATTTTTCCATTTCATCGATAGATTGTCTCACGCTTACAGGCTAGCGTTATATACGCCTCACACACAACTCAACAACCCCCGGTCCCACATATTAGCATCTAAACTCAACAGACCCATTTCATACGTATCTGCTACTCGATTACACATTTCTGAATCCCGCCTTCACTGTGGCTCATCCGGCACAGGCGTAACAGTTGCTCCCCCTGGAATTGGAGCTTGTCCCCAAGCGACAGCATCTGGAAATCTTGTGCGAACAACATCAAAATCCTCCCAGGTTGCCAAAGCAGCAGGAAGAGAGCCCCAACCCACCAGAATCTGAACCACCGCAGCATTGCCTTTTTCACCATGTGCCCAGTCCAAAATCTCTGAAGGAAGTAATTCAGCAATATCCAACTGAGCAGCAGTCGGTAACAGAGAAAACACAGGCTTGTTATCCGGAATAAAGGGCTTCAATTGAGAAACATGAAACACGGGATGGATGAGACAATCCTCAGGTAACTTGAGTTTATAAGCCACCGACCCAATCGCAGCCAGAATCTCGAAGGGACCAAAGTACTTGAAAGCCAACTTGGGAAATAGGCGAGAAACCACAGAACGCTGGGCATAAGGTTGCAGCTTCAGAAGCACCAAATCCCCCACTTGATATTGACGAGCAGTGCGTTTAGAATCAGCCAACTGCTTCATGTGATTTTCAGCACGAGCTAAATGGTGCTGTAACATAGAAGAAAACAGATCACACTCTCTCAGGAGGACATCTGCATCAGTGACAGCTTCATCAGTAGACTCAGGTAGAGCAGACAGAATACCATAAGTGGGATCACTACCATAAAGAGCGCGATGTGGAGAACACTTCAAGGCTGAGTGAAAACTGGTGTTATACCAATATTGAGCCAAAGGAAGCCATGTCGACCACTTAGTGGGAGTAGAAGCAATAGCACAACACAAATACATTTCAAGGCACTGATTCACACGCTCAGTCTGTCCATCAGACTGAGGATGATATGCAGTGGTGAGATTCAAAGGGATAGCAAACCTTTTGAACATATTCTGCCAAAAATGACTTGTGAAAATCTTGTCTCTATCCGACACAATCGACTTGGGCATGCCATACAAAGAAGCTACTCTGCTTAAATAACTGTCAACCACTTGAAGTGCAGAAAAAGGATGTTTCAAGGGAAGAAAATGTGCATACTTGGTGTATCGATCTACCAACCAAAATGACATCAAAACCCTTGGAGACTGGAAGGCCCTCAATAAAATCCATGGAAATGTCTTGCCATGCCCCAGAAGGAATTGGAAGAGGCTGCAATAACCCTGGATAAGCACAGTGTTCATGTTTGGCTTGTTGACACACAGTGCATTGTTGGACAAACTCTTCAACAGCATGTTTGAGACCTTTCCACACAAACAGCCTTTTGACCCGTTGATAAGTAGCCAATATTCCCGAGTGACCCCCAATAGTCGAGTCATGAAAAGTAGAAATAATTTTGGTTTTCAGAGCAGAATTGCTTCCCAACTATAGCCGGTCTTTCTTCCTAATCAAGCCATGATACTGCCAATTCAGCCAATAGAGCCTGAGCCTAAGAATCCACAACATATGAATTCACCACCACTTGTATCCAGACTGGCTGAGCTACTGAAATGGCTTGCAGAGAGAAGAAATGACCCACTCGAGAAAGAGCATCAGCAGACTTATTTTCAGACCCCTTCTTATACTGAAATTTATATTGCAAACCAATCAACTTAGTCATAGCCTTCTTTTGGAGTTCAGAAACCAGCACTTGATCATCCAAATGGCACAAGGACTGGTGATCTGTTTTAATTGTAAATGGTCCTATTAACAAATATGGCCTCCATTTATCAACCGCCATCATGATGGCTAAAAACTCCTTTTCATAAATGGATAATTTTTGGTTATTGACCCCCAAAGCTTTACTGTAAAAAGCCACTGGATGCCCCTCTTGACAGAGAACAGCACCAATACCTGTTGAGCAAGCATCAGTTTCTATAACAAATGACTTGGCAAAATCAGGTAATACCAACACTAAAGCAGATGTCATAGCATGTTTCAATGCATCAAATGCTTGCTGAGCAGTGTCAGACCACACAAATTTGGAATTCTTCTGTAACAGTACTGTCAAGGGTTTAGCTAAAATGCCATAGCTCTTAATAAACTTCCTATAATAACCAGTGAGTCCCAAAAAACCTCTTAGCTCAATAAGATTGGTGGGCACAGGCCATTGCAACATTACTTGGATCTTATCAGGGTTAGTGGCTACCCCAACAGCTGAAATTATGTGTCCCAAATACTCTAAGTGAGGTGTGGCAAAAGAACATTTTGACAGTTTGGCACAAAGTTGATGTTCTTGGAGCAACTGCAAAACACATCTTAGATGGTGGAGATGCTCTGCCCAAGATTTACTGTAAACAAGAATGTCATCCATGAAGACTAAAACAAACTTGCGCAAAAAAGAGCAAAGATGGAATTCATGAGATATTGAAAAGTAGCTGGGGCATTGGAGAGACCAAAAGGCATGACCCGAAATTGGAAATGTCCATCATGTGTCTTGAAAGCAGCTTTAAACTCATTAGCTTCCAACATTCTAATCTGATGATAACCACTGCGAAGGTCCAATTTGGAAAAATATTTTGTGCCAGGTAACTCATCAAGCAACTCATCCACAATGGGTAGAGGAAACTTGTTTTTGACAGTAAGAGAATTCAACCGTCGGTAATCCACACAAAAACGCCAAGAATTGTCCTTTTTCTTAACTAACAGCACAGGAGAAGCAAAGGGGCTACAACTTGGGGAGATTAGTCCTGCTGCTAACATATCAGATACCTGACGCTTAGTCTCATCCTTTTGAGCTGGAGAGTATCTGTACGGGTGAGCATTCACAGGTACAGCATTTGGAACCAGGGCAATAGTATGATCCAACACCCTGTGAGGTGGTAAAGTAGTAGAGTCCTGAAACACAGACTGAAACTCTTGCAGCAAAGCCTGAATTTCAGGGAAACTAGAGGAGGGAGCGATCACCTCAGAAGATTGTTCCACTACTGCCACGGCCCAAACATCATTGCCCTTGGTCCACTTTAACACCTGAACAGCAGAAACTTCATTGACAGGACCAATTGAATCAGGGACTGACATGCCTTGCAAAGAAATCGGAGAACCCTTGTAAGAGAACTGTAACTGTTTAGCAGCCCAATCACATGTCACCGGGCTAAATTGACTCAACCAGTCCATACCCAGCACAACATCATACCCACCCATAGGTAACACTCTCAGAGGAAAGGAAAATTCATAACCCTGAACCCACCAAGTAAACTGGGGAATTTTAGCTGTACAATAGACAGTATCACCATTGGCCACCCTGACAACAGTAGACTGAATCATATCAGGAGATAAATGCAGTCGGTCACACAATCCAGCATCAATAAAACTGTGTGTGCTGCCTGAATCCACCAAAATGATAACCACTTGATTTTGAACCAAAGCACGCAACTGAATTGTATCACTATTGCAAGTGCCAGCTAAGGCATGTAAAGAGAGATGAGAAGAAGTCTCAGAAATATCCAGAGCAGTGATAACATCCAACAAGTCATCAGAAAGAACTTCAGAGTCGGACTGCAACTGAATAGCTTTCAACTGAGCAGGTTCAGTCTTTGCACAAACATGGCCAGGAACATATTTATCCCCACATTTGAAACATAGTCCCTGAGCACGACGATACTCCTTAAGTTGCTGAGCCTTCCACAATTCACCCGGTGCCAACTTAGGTTTATCATAATTCTTAACAGAAAGATGGTCCTTCTTAACATGCACCTTCTTAGTACCAGCCCCAGACAGAGCAGACTCATGAGCCAAAGCCACCAAGTATGCCTGATTCACACCAAGTATGCCTGATTCACAGTAGTGGGCTCATGAGCCTGCACAGCTGATCGCAACTCATCTTTCAGTCCCAACAAAAAGTGACGAATCAAAAATGTATTAGACAACAATGGATCATAGAGTCTAAGCTGATAAACCAGCTGATTGAATTTGAAACGGTATTCAGTCACCGAACCAGTTTGATGCAACAACAAAAGTTCATCCATCTTCACATTTTGCAAATATACCTCAAATTCAGTTAAGACTAATGCCTTCAAAGTGGCCCAATCATGTACACCTATTTCTAACTTCCATGCTTGATACCAATTAGCGGCATCCCCAATCATATTCAGAGAAGCGGCAGAAACTTGAAAACCCTCAGCGATTTGATAAAACCCAAAGTAAGTTTCACAGTTATCCAGCCACACTCTCACGTCTGTACCATCAAAACGGGGAAAATCCATCTTAGGCGACCATTGGCACCGCGGCGCCGAATCCCCACCCTCAACAGAAGTATGAGGCAAAGGGGAACCCGATACCTACGCAACCGACGCAGAAACGGCGGAGGAGGCGGCGGCGGTGGCGGAGGTGGTGCCGTCGAAGTAGACGCCGCAAATGCCCCTCGCGGAGTCTCCAGCAACGGCGGCTGGCGATGCGATGGAATTGATGGCGCCTCCGGCCCTGGAGCAGCCGCTACCGCCTTCAGGGCGCGACTGCTCTTGCTGAACCTGACCCAACAAAGTAATCGAGAGATCCATCTTCGCTTGAACCCGATCCAGCCGCTCCCCTTGCGTGACGAGCTTGGCGTCAATCTCCCCCAAGTGATTGGTGATGACGTCCATGCCCTCCACCTTCCCCGCCAACTTCGTCAACACTTCCATGACGCGCGCCTCCATCACCTCCATCGCCGCCACCATTTGACGGACCTGAACACTTTGCTTCGCGGGTGCCGTTGCGTCACCTACTCCAAACCTGGCGAACCAGATACGAGATTGACGGCGGCGCAACCTGGAGGTCAGCCACCAACTCGGCCACAGGAATTACCACCAGACGGTCGAGAGAGTGCGAGGGAGCAAACAGGACCGAAAGCAACTGATACCAAGTTGTTACAACCCCGATTGCCGGCGGCGAAGTTTGCCGGAGATCCAACTGAATTCAGAGGCGTGAGGAAGAAGAAAGAAGCAGAGCACACGAGAGAGAAGCAGAGGACGGGGAATATTTTTCCATTTCATCGAT
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| CDS seq | ATGACTCGACTATTGGGGGTCACTCGGGAATATTGGCTACTTATCAACGGGTCAAAAGGCTGTTTGTGTGGAAAGGTCTCAAACATGCTGTTGAAGAGTTTGTCCAACAATGCACTGTGTGTCAACAAGCCAAACATGAACACTGTGCTTATCCAGGGTTATTGCAGCCTCTTCCAATTCCTTCTGGGGCATGGCAAGACATTTCCATGGATTTTATTGAGGGCCTTCCAGTCTCCAAGGGTTTTGATGTCATTTTGGTTGGTAGATCGATACACCAAGTATGCACATTTTCTTCCCTTGAAACATCCTTTTTCTGCACTTCAAGTGGTTGACAGTTATTTAAGCAGAGTAGCTTCTTTGTATGGCATGCCCAAGTCGATTGTGTCGGATAGAGACAAGATTTTCACAAGTCATTTTTGGCAGAATATGTTCAAAAGGTTTGCTATCCCTTTGAATCTCACCACTGCATATCATCCTCAGTCTGATGGACAGACTGAGCGTGTGAATCAGTGCCTTGAAATGTATTTGTGTTGTGCTATTGCTTCTACTCCCACTAAGTGGTCGACATGGCTTCCTTTGGCTCAATATTGGTATAACACCAGTTTTCACTCAGCCTTGAAGTGTTCTCCACATCGCGCTCTTTATGGTAGTGATCCCACTTATGGTATTCTGTCTGCTCTACCTGAGTCTACTGATGAAGCTGTCACTGATGCAGATGTCCTCCTGAGAGAGTGTGATCTGTTTTCTTCTATGTTACAGCACCATTTAGCTCGTGCTGAAAATCACATGAAGCAGTTGGCTGATTCTAAACGCACTGCTCGTCAATATCAAGTGGGGGATTTGGTGCTTCTGAAGCTGCAACCTTATGCCCAGCGTTCTGTGGTTTCTCGCCTATTTCCCAAGTTGGCTTTCAAGTACTTTGGTCCCTTCGAGATTCTGGCTGCGATTGGGTCGGTGGCTTATAAACTCAAGTTACCTGAGGATTGTCTCATCCATCCCGTGTTTCATGTTTCTCAATTGAAGCCCTTTATTCCGGATAACAAGCCTGTGTTTTCTCTGTTACCGACTGCTGCTCAGTTGGATATTGCTGAATTACTTCCTTCAGAGATTTTGGACTGGGCACATGGTGAAAAAGGCAATGCTGCGGTGGTTCAGATTCTGGTGGGTTGGGGCTCTCTTCCTGCTGCTTTGGCAACCTGGGAGGATTTTGATGTTGTTCGCACAAGATTTCCAGATGCTGTCGCTTGGGGACAAGCTCCAATTCCAGGGGGAGCAACTGTTACGCCTGTGCCGGATGAGCCA
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| Protein seq | MTRLLGVTREYWLLINGSKGCLCGKVSNMLLKSLSNNALCVNKPNMNTVLIQGYCSLFQFLLGHGKTFPWILLRAFQSPRVLMSFWLVDRYTKYAHFLPLKHPFSALQVVDSYLSRVASLYGMPKSIVSDRDKIFTSHFWQNMFKRFAIPLNLTTAYHPQSDGQTERVNQCLEMYLCCAIASTPTKWSTWLPLAQYWYNTSFHSALKCSPHRALYGSDPTYGILSALPESTDEAVTDADVLLRECDLFSSMLQHHLARAENHMKQLADSKRTARQYQVGDLVLLKLQPYAQRSVVSRLFPKLAFKYFGPFEILAAIGSVAYKLKLPEDCLIHPVFHVSQLKPFIPDNKPVFSLLPTAAQLDIAELLPSEILDWAHGEKGNAAVVQILVGWGSLPAALATWEDFDVVRTRFPDAVAWGQAPIPGGATVTPVPDEP |
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| Function | Transposon Tf2-11 polyprotein [UniProtKB/Swiss-Prot:Q9UR07] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g032249A | OsNip_08t032249A-01 | Chr08 | 14012399 | 14017518 | - | IsoSeq | ||
| CDS seq | ATGACTCGACTATTGGGGGTCACTCGGGAATATTGGCTACTTATCAACGGGTCAAAAGGCTGTTTGTGTGGAAAGGTCTCAAACATGCTGTTGAAGAGTTTGTCCAACAATGCACTGTGTGTCAACAAGCCAAACATGAACACTGTGCTTATCCAGGGTTATTGCAGCCTCTTCCAATTCCTTCTGGGGCATGGCAAGACATTTCCATGGATTTTATTGAGGGCCTTCCAGTCTCCAAGGGTTTTGATGTCATTTTGGTTGGTAGATCGATACACCAAGTATGCACATTTTCTTCCCTTGAAACATCCTTTTTCTGCACTTCAAGTGGTTGACAGTTATTTAAGCAGAGTAGCTTCTTTGTATGGCATGCCCAAGTCGATTGTGTCGGATAGAGACAAGATTTTCACAAGTCATTTTTGGCAGAATATGTTCAAAAGGTTTGCTATCCCTTTGAATCTCACCACTGCATATCATCCTCAGTCTGATGGACAGACTGAGCGTGTGAATCAGTGCCTTGAAATGTATTTGTGTTGTGCTATTGCTTCTACTCCCACTAAGTGGTCGACATGGCTTCCTTTGGCTCAATATTGGTATAACACCAGTTTTCACTCAGCCTTGAAGTGTTCTCCACATCGCGCTCTTTATGGTAGTGATCCCACTTATGGTATTCTGTCTGCTCTACCTGAGTCTACTGATGAAGCTGTCACTGATGCAGATGTCCTCCTGAGAGAGTGTGATCTGTTTTCTTCTATGTTACAGCACCATTTAGCTCGTGCTGAAAATCACATGAAGCAGTTGGCTGATTCTAAACGCACTGCTCGTCAATATCAAGTGGGGGATTTGGTGCTTCTGAAGCTGCAACCTTATGCCCAGCGTTCTGTGGTTTCTCGCCTATTTCCCAAGTTGGCTTTCAAGTACTTTGGTCCCTTCGAGATTCTGGCTGCGATTGGGTCGGTGGCTTATAAACTCAAGTTACCTGAGGATTGTCTCATCCATCCCGTGTTTCATGTTTCTCAATTGAAGCCCTTTATTCCGGATAACAAGCCTGTGTTTTCTCTGTTACCGACTGCTGCTCAGTTGGATATTGCTGAATTACTTCCTTCAGAGATTTTGGACTGGGCACATGGTGAAAAAGGCAATGCTGCGGTGGTTCAGATTCTGGTGGGTTGGGGCTCTCTTCCTGCTGCTTTGGCAACCTGGGAGGATTTTGATGTTGTTCGCACAAGATTTCCAGATGCTGTCGCTTGGGGACAAGCTCCAATTCCAGGGGGAGCAACTGTTACGCCTGTGCCGGATGAGCCA
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| Protein seq | MTRLLGVTREYWLLINGSKGCLCGKVSNMLLKSLSNNALCVNKPNMNTVLIQGYCSLFQFLLGHGKTFPWILLRAFQSPRVLMSFWLVDRYTKYAHFLPLKHPFSALQVVDSYLSRVASLYGMPKSIVSDRDKIFTSHFWQNMFKRFAIPLNLTTAYHPQSDGQTERVNQCLEMYLCCAIASTPTKWSTWLPLAQYWYNTSFHSALKCSPHRALYGSDPTYGILSALPESTDEAVTDADVLLRECDLFSSMLQHHLARAENHMKQLADSKRTARQYQVGDLVLLKLQPYAQRSVVSRLFPKLAFKYFGPFEILAAIGSVAYKLKLPEDCLIHPVFHVSQLKPFIPDNKPVFSLLPTAAQLDIAELLPSEILDWAHGEKGNAAVVQILVGWGSLPAALATWEDFDVVRTRFPDAVAWGQAPIPGGATVTPVPDEP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g032249A | OsNip_08t032249A-02 | Chr08 | 14016419 | 14017518 | - | IsoSeq | ||
| CDS seq | TCGATGAAATGGAAAAATATTCCCCGTCCTCTGCTTCTCTCTCGTGTGCTCTGCTTCTTTCTTCTTCCTCACGCCTCTGAATTCAGTTGGATCTCCGGCAAACTTCGCCGCCGGCAATCGGGG |
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| Protein seq | SMKWKNIPRPLLLSRVLCFFLLPHASEFSWISGKLRRRQSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.139636 | 0.455228 | 1.084940 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23070 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0221200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
