Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g025204A | OGI:04046690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:9261728-9266797 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAGAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGTAAGTAAATACGTAACTAGGAATATGGAAAATTGCATTTTTGGAATTTGCAATAATGGGATGGGCGAACGACGGGAATTGAACCCGCGCATGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTTATCCAGCTAAAGGATTTTCTCTTTTTTCCATTCATCATTATTCTATTTATTCTGACCTCCATACTTCGATCGAGATATTGGACATCGAATGCCACTCTTTAAAATGGAAAAAAAGGAGTAATCAGCTGTGACACGAAAAAAAACGAATCCTTTTGTAGCTCATCATTTATTGGCAAAAATAGAAAAGGTCAATATGAAGGAGGAGAAAGAAACAATAGTAACGTGGTCCCGGGCATCTAGCATTCTACCCGCAATGGTTGGCCATACAATCGCGATTCATAATGGAAAGGAACATATACCTATTTACATAACAAATCCTATGGTAGGTCGCAAATTGGGGGAATTCGTACCAACTCGGCATTTCACGAGTTATGAAAGTGCAAGAAAGGATACTAAATCTCGTCGTTAACTGAATTCAGAATAGAAAGATTCAAAATAAAAAAAAAAGAAATAGGTAAGCGGGGAATAACCTTATTTATGACAAGTTTCAAACTGGTAAAGTATACCCCTAGGATAAAGAAGAAGAAGAGTGGGCTAAGGAAACTCGCAAGAAAAGTACCAACCGATCGTCTACTTAAGTTCGAACGGGTTTTCAAAGCACAAAAACGCATCCACATGTCCGTTTTCAAAGTACAAAGAGTTCTGGATGAGATTCGTTGGCGTTACTACGAAGAAACTGTTATGATATTGAACCTCATGCCTTATCGAGCATCTTATCCCATCTTAAAGTTGGTTTATTCGGCAGCAGCAAATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTATTATGAATAAATTCAGACCTCGGGCTCGAGGACGTAGTTCTCCCATAAAAAAAACCATGTGTCATATAACAATTGTACTAAATATAGTAAAGAAATCGAAATAATCTTTAGATCCATCTAAGATTTGATTCCCGGTAAAAAAAATAGAATAGAAAAATATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGTAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGTAGACTTCCCCTCCAAACAATTCGCGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAGGAGTTAAAATTTGGATATTCGTAGACGAAGAATAACCAACCCTGTCTTCCCATTCTGTTCAGTAATAGAATAAAAAATGACAAGAGCCTTATTTTCCCTAAAATCCCTGAAAAAAAGAAGAAATTCTACCTCTTTCTATAAGATTTAATGAAAATTGAGAAATCTTTTAATAAAATTGCTATGCTTAGTGTGTGACTCGTTAGTTTTTTTTAGGGTTCAAAAAGGGGATTAAAAAAAAATAGAATGAACCCTACTATGTAATTATAGAAAATGAACTAATAACCAACCTATTGCTTCGTATTGTCGAGATCCTAACTAAGAAACAGTCACTATATGAATAAATACATCTATCATAAATGAGTAAATCTATCATATACGTGTAGCAACTGCAATTTTTTCTTTAAAAAAAATAGGATTCTAAGTTGTGAAGCAAAACTAAAGGGGATGTAGATAAAAGGAAGGATGATAGAAAGAAGGAAGAGAAATAAGAAAGATATAGGATTCCAATATGTATGGTCTATGAATTACATCATAAAAAGCAATGTGATAAAGCATCAATATAATAAAAATAACAGAGAATTCGAAATCGTAATTTGATTGAAACAAGAAATACAAATTTCAAGGAATAACAAAGAGCGTCCCGAGTTAATAAAACTGAGAAATTGACTCGGAAAGAAATTTTTTGGAAGCTCCATTGCGAGATTCAAACCTAACCATTAAAGGAGAAGCAGTGGGAACGACAGAACCTATGACTGGATAGGATTTTCTTGAAAAGAATCCCAATACTTCATTGGGTGGGATGGCGGAACAAACCAAAAAAATTGTCTTATTTGATAAGGTTATGAATTAACAAATAAGACAGGAAAGAGTAAATATTCGCCCGCGAAATTTTTATTGAATTAGAATACTTTACCGCGATTCAATAAGAGTAAAATAAAAAAAGGAGATTAAAAAAAAAGAATTACATTAAATATAGAATATAGATAAATAAACATACACATCTAGATATATTCTAGATCCTCTTTCTTGACTATATATTTTAGTATTTTAATAAATTCAATATTAAAAACCCTAACCTTTCCTATTAATGTGTATCTATCCGTAATATTTTAGAATATTGTGGAATTAGAGAAATTTGCACACTTTCTCATTTGATTCGCGAGGAGCTGGATGAGAAGAAACTCTCATGTCCAGTTTTGCAGTAGAGATGGAACTAAGAGAGAACCATCGACTATAACCCCAAAAGAACCAGATTTCGTAAACAACATAGGGGAAGAATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGGTCGAATACTTTATGAAATGGGCGGAGTATCCGAAACTGTAGCTAGAGTAGCTATTTCCATAGCTGCCAGCAAAATGCCCATACGAAGTCAATTTCTTCGGTTAGAAATATAACCCCCCCAAAAAAAGTAGTATTGAAAATAAAAAACCAGGTTCTTCTTTCTGGAAAGACAATATTTCTTTCATCCTTTTGCATTGAAATAACAAATTGAAATCAAAATAATATGATTCAACCTCAGACCCTTTTAAATGTAGCAGATAACAGTGGAGCTCGAAAATTGATGTGTATTCGAGTCATAGGAGCTGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATCAAAGACGCAGTGCCCCAAATGCCTCTAGAAAGATCCGAAGTAATTCGAGCTGTAATTGTACGTACATGTAAAGAGTTCAAATGCGAAGACGGTATAATAATACGCTATGACGACAATGCAGCGGTTATCATTGATCAAAAAGGAAATCCAAAAGGAACTCGCGTTTTTGGCGCGATCGCCGAGGAATTGAGAGAATTGAATTTTACTAAAATAGTTTCATTAGCTCCTGAAGTATTATAAATACTAGTAGACAAGATATAGATCAAATAAAAAATTAGTAGATTGTGTTTCACGTATATGCTTTAGAATCCAAAACGAAAAGAAAAAAGAGAACATGTTGATTATAGAAAAATTAGGAGGAACCTAGAATTAGAGTCTTATGGGCAAGGACACTATTGCTGATTTACTAACCTCTATAAGAAACGCGGACATGAATAAAAAAGGAACTGTTCGGGTAGTATCTACAAATATTACCGAAAACATTGTTAAAATACTTCTACGAGAGGGTTTTATTGAAAGTGTTCGGAAACATCAGGAAAGTAACAGATATTTCTTGGTTTCAACTTTGCGACATCAAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGAACCTTTTTAAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAATGGGAATTGCTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATTGGGGGAGAAGTCTTATGTTATATATGGTAATCGCCCCGCCTATAGCGGTAATCGCCCCACCTATAGTTATAGTACCCGAATTCTATCTTGAACTTCCTATTTTTCAAACAAAAATACAACGTTTTTTTATTTG
More
|
||||||||||
| CDS seq | ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGTAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGTAGACTTCCCCTCCAAACAATTCGCGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAGGAGTTAAAATTTGGATATTCGTAGACGAA
More
|
||||||||||
| Protein seq | MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILVEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDE |
||||||||||
| Function | 30S ribosomal protein S3, chloroplastic [UniProtKB/Swiss-Prot:P0C485] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g025204A | OsNip_08t025204A-01 | Chr08 | 9261728 | 9263315 | + | IsoSeq | ||
| CDS seq | CTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTTTGAGAGAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCCGTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCCGGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCCCCATGGGGGCGGTGAAGGGAAAGCCCCCATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGGAAAAGGAAAAAATATAGTGATAGTTTTATTCTTCGTCGCCGT
More
|
|||||||
| Protein seq | LWKKLVQFGKGFFERKEESTSTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLVSQNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWGYPALGRRTRKRKKYSDSFILRRR |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g025204A | OsNip_08t025204A-02 | Chr08 | 9262776 | 9264131 | + | IsoSeq | ||
| CDS seq | ATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTA |
|||||||
| Protein seq | MLLIIGISTKQIYSSLKPKSVGVL |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g025204A | OsNip_08t025204A-03 | Chr08 | 9262785 | 9263855 | + | IsoSeq | ||
| CDS seq | ATGCTACTCATTATAGGGATTTCGACAAAGCAAATTTATTCATCACTAAAGCCGAAGTCAGTAGGAGTACTA |
|||||||
| Protein seq | MLLIIGISTKQIYSSLKPKSVGVL |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g025204A | OsNip_08t025204A-04 | Chr08 | 9262786 | 9266797 | + | IsoSeq | ||
| CDS seq | ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGTAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGTAGACTTCCCCTCCAAACAATTCGCGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAGGAGTTAAAATTTGGATATTCGTAGACGAA
More
|
|||||||
| Protein seq | MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILVEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDE
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g025204A | OsNip_08t025204A-05 | Chr08 | 9262787 | 9266215 | + | IsoSeq | ||
| CDS seq | ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAATCACCATTCCTTTTGGTTCGCACAACCAAAAAATTATTCTGAAGGTCTACAGGAAGATAAAAAAATACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGTAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGTAGACTTCCCCTCCAAACAATTCGCGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAGGAGTTAAAATTTGGATATTCGTAGACGAA
More
|
|||||||
| Protein seq | MGQKINPLGFRLGTTQNHHSFWFAQPKNYSEGLQEDKKIRNCIKNYIQKNRKKGSNRKIEADSSFEVITHNKKMDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVNSVNQRLNIGIEKVKEPYRQPNILVEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 74.246223 | 79.271240 | 90.407982 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g15272 | RBH | 17.715952 | 14.219883 | 9.470800 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026720 | RBH | 6.398159 | 15.291897 | 58.065765 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227100 | RBH | 721.3843995 | 324.9647215 | 236.208443 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227600 | RBH | 1028.5620725 | 264.4079285 | 242.036064 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
