Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0236400 | OGI:08023510 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:8283843-8285334 | ||||||||
| Gene Symbol | RLCK248, OsRLCK248, SDRLP-5 | ||||||||||
| DNA seq | CTAGATCATGGAAAGAGTATGGTCGGATTCCAATGCTCTCCTCATCAAATTCAGTTTCATGATGTTGTGGAGCACGTGTGTACCTCAAAAATGGCCGGCGCTTGCATAGCATTACAGACACCGAGAGCAGTACAAGTGAGAGCATGCCGAGGGCAGCGCCAGATGTCAACATGGCAATTGAAGTTGCACTTGCAGTCCTTTTTGGTTCATAGGAGTAGACCTTCACAAATAGCGTGGTGTTGCTACCAGGAACCCTCTTGCCATACCTTATAGGAAGCATCTGTTTTGAGCAGTAGGAGTCAAACATGGCAATCTCGCAGGCGCAGTCAGACATGCAAATTGCTTTACACTCTTCAATGGTTGGTGATTGAGGTGGGACGTTGTATGACCTATCTGACCAACTAGTGTTCTTCACCGTGACCATTGTGGCTACCAGTCCGATGTCACCATTAGGGCTATTCCCGGTGCAACCACCAGTCTGTGCCCTCCAGCAACCTTGAGTGCTTTGGTTAGCACTTAAGAATTCAAACCCTGGAAGGCAGGAACAGCTGGTTTCTCCACTACTAGTTACTTGGCAGAAGCTATTTGGACCACAAACACCTTTCACACTGCAGCGATCATTGCTCGGTGGCACCAACCATTCGACCTTTGTTTTGGGCGCTCCTCCTTGCTTGAAAAACACATGCGAGTAGAGTCGCAGTATGCCATCAGCATCCAATGTCAGATGGTAGTAACTCTCTGAATCTGGGGAGGCACTCAATGACTGATTAGTCAGAAACAACACCATTCTATATGGACTATTTCGGTCGAACAGCCATAGGGTGCCGTTGGGATCCAGTGTAAGAGTGAGAAGAAAGTTTTGTGCATAAGTACCAGTATTCCAGTATGCACTATCAGGATCTATCGCGCCTATCGGATACATCACAAGGTTGCCATCTGGCTGGTTGGAAAGGCGATACTTTCCTGTGGCATGGTTGGTGTTAGAGACACTTGAGAACAGCTGATTGCCAGGAGGCAAGTTCTGCCCTGGTAACAGGGTGTCCGTCGGAGTACCAAAGGTAGACCATATGACCTGATTTTTGGCGTCATATAACACAAAGTTGCCGGTGTCCAAGATAGCAGCAGAAGTAGCCGAAGTAGGGGCGGCAGATATTACCTTCCCTTGGAATCCTTGATTAGGTGGAATCCATTGAAGTGAACCACCAGCGGTTAACAGAATTGAACCACCAGAAACCGGGGGATCATTTCTGAAGGCTGTCCACAAGATGAACCTGGATGGATCAGTGACAAGCCACACACCAATGGAGAATCCCTCCCCTTCGGGATAGAAGCCAAACGCAAAGCGCCCTGAGGGGGAGACCCAACTTTGGGGGCCAGCTGTGTTGATTTCAGAACCTTGAGGAATGGTTGTCTCATTGATCTGAGCTCCCATGGAATGACTAGCTTTGATGATGAAGAGAATCAGGCACAGAGGGATAATATAAGGGGACAT
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| CDS seq | ATGTCCCCTTATATTATCCCTCTGTGCCTGATTCTCTTCATCATCAAAGCTAGTCATTCCATGGGAGCTCAGATCAATGAGACAACCATTCCTCAAGGTTCTGAAATCAACACAGCTGGCCCCCAAAGTTGGGTCTCCCCCTCAGGGCGCTTTGCGTTTGGCTTCTATCCCGAAGGGGAGGGATTCTCCATTGGTGTGTGGCTTGTCACTGATCCATCCAGGTTCATCTTGTGGACAGCCTTCAGAAATGATCCCCCGGTTTCTGGTGGTTCAATTCTGTTAACCGCTGGTGGTTCACTTCAATGGATTCCACCTAATCAAGGATTCCAAGGGAAGGTAATATCTGCCGCCCCTACTTCGGCTACTTCTGCTGCTATCTTGGACACCGGCAACTTTGTGTTATATGACGCCAAAAATCAGGTCATATGGTCTACCTTTGGTACTCCGACGGACACCCTGTTACCAGGGCAGAACTTGCCTCCTGGCAATCAGCTGTTCTCAAGTGTCTCTAACACCAACCATGCCACAGGAAAGTATCGCCTTTCCAACCAGCCAGATGGCAACCTTGTGATGTATCCGATAGGCGCGATAGATCCTGATAGTGCATACTGGAATACTGGTACTTATGCACAAAACTTTCTTCTCACTCTTACACTGGATCCCAACGGCACCCTATGGCTGTTCGACCGAAATAGTCCATATAGAATGGTGTTGTTTCTGACTAATCAGTCATTGAGTGCCTCCCCAGATTCAGAGAGTTACTACCATCTGACATTGGATGCTGATGGCATACTGCGACTCTACTCGCATGTGTTTTTCAAGCAAGGAGGAGCGCCCAAAACAAAGGTCGAATGGTTGGTGCCACCGAGCAATGATCGCTGCAGTGTGAAAGGTGTTTGTGGTCCAAATAGCTTCTGCCAAGTAACTAGTAGTGGAGAAACCAGCTGTTCCTGCCTTCCAGGGTTTGAATTCTTAAGTGCTAACCAAAGCACTCAAGGTTGCTGGAGGGCACAGACTGGTGGTTGCACCGGGAATAGCCCTAATGGTGACATCGGACTGGTAGCCACAATGGTCACGGTGAAGAACACTAGTTGGTCAGATAGGTCATACAACGTCCCACCTCAATCACCAACCATTGAAGAGTGTAAAGCAATTTGCATGTCTGACTGCGCCTGCGAGATTGCCATGTTTGACTCCTACTGCTCAAAACAGATGCTTCCTATAAGGTATGGCAAGAGGGTTCCTGGTAGCAACACCACGCTATTTGTGAAGGTCTACTCCTATGAACCAAAAAGGACTGCAAGTGCAACTTCAATTGCCATGTTGACATCTGGCGCTGCCCTCGGCATGCTCTCACTTGTACTGCTCTCGGTGTCTGTAATGCTATGCAAGCGCCGGCCATTTTTGAGAGCATTGGAATCCGACCATACTCTTTCCATGATCTAG
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| Protein seq | MSPYIIPLCLILFIIKASHSMGAQINETTIPQGSEINTAGPQSWVSPSGRFAFGFYPEGEGFSIGVWLVTDPSRFILWTAFRNDPPVSGGSILLTAGGSLQWIPPNQGFQGKVISAAPTSATSAAILDTGNFVLYDAKNQVIWSTFGTPTDTLLPGQNLPPGNQLFSSVSNTNHATGKYRLSNQPDGNLVMYPIGAIDPDSAYWNTGTYAQNFLLTLTLDPNGTLWLFDRNSPYRMVLFLTNQSLSASPDSESYYHLTLDADGILRLYSHVFFKQGGAPKTKVEWLVPPSNDRCSVKGVCGPNSFCQVTSSGETSCSCLPGFEFLSANQSTQGCWRAQTGGCTGNSPNGDIGLVATMVTVKNTSWSDRSYNVPPQSPTIEECKAICMSDCACEIAMFDSYCSKQMLPIRYGKRVPGSNTTLFVKVYSYEPKRTASATSIAMLTSGAALGMLSLVLLSVSVMLCKRRPFLRALESDHTLSMI |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 [UniProtKB/Swiss-Prot:Q0JEU6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0236400 | OsNip_08t0236400-00 | Chr08 | 8283843 | 8285334 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCCCCTTATATTATCCCTCTGTGCCTGATTCTCTTCATCATCAAAGCTAGTCATTCCATGGGAGCTCAGATCAATGAGACAACCATTCCTCAAGGTTCTGAAATCAACACAGCTGGCCCCCAAAGTTGGGTCTCCCCCTCAGGGCGCTTTGCGTTTGGCTTCTATCCCGAAGGGGAGGGATTCTCCATTGGTGTGTGGCTTGTCACTGATCCATCCAGGTTCATCTTGTGGACAGCCTTCAGAAATGATCCCCCGGTTTCTGGTGGTTCAATTCTGTTAACCGCTGGTGGTTCACTTCAATGGATTCCACCTAATCAAGGATTCCAAGGGAAGGTAATATCTGCCGCCCCTACTTCGGCTACTTCTGCTGCTATCTTGGACACCGGCAACTTTGTGTTATATGACGCCAAAAATCAGGTCATATGGTCTACCTTTGGTACTCCGACGGACACCCTGTTACCAGGGCAGAACTTGCCTCCTGGCAATCAGCTGTTCTCAAGTGTCTCTAACACCAACCATGCCACAGGAAAGTATCGCCTTTCCAACCAGCCAGATGGCAACCTTGTGATGTATCCGATAGGCGCGATAGATCCTGATAGTGCATACTGGAATACTGGTACTTATGCACAAAACTTTCTTCTCACTCTTACACTGGATCCCAACGGCACCCTATGGCTGTTCGACCGAAATAGTCCATATAGAATGGTGTTGTTTCTGACTAATCAGTCATTGAGTGCCTCCCCAGATTCAGAGAGTTACTACCATCTGACATTGGATGCTGATGGCATACTGCGACTCTACTCGCATGTGTTTTTCAAGCAAGGAGGAGCGCCCAAAACAAAGGTCGAATGGTTGGTGCCACCGAGCAATGATCGCTGCAGTGTGAAAGGTGTTTGTGGTCCAAATAGCTTCTGCCAAGTAACTAGTAGTGGAGAAACCAGCTGTTCCTGCCTTCCAGGGTTTGAATTCTTAAGTGCTAACCAAAGCACTCAAGGTTGCTGGAGGGCACAGACTGGTGGTTGCACCGGGAATAGCCCTAATGGTGACATCGGACTGGTAGCCACAATGGTCACGGTGAAGAACACTAGTTGGTCAGATAGGTCATACAACGTCCCACCTCAATCACCAACCATTGAAGAGTGTAAAGCAATTTGCATGTCTGACTGCGCCTGCGAGATTGCCATGTTTGACTCCTACTGCTCAAAACAGATGCTTCCTATAAGGTATGGCAAGAGGGTTCCTGGTAGCAACACCACGCTATTTGTGAAGGTCTACTCCTATGAACCAAAAAGGACTGCAAGTGCAACTTCAATTGCCATGTTGACATCTGGCGCTGCCCTCGGCATGCTCTCACTTGTACTGCTCTCGGTGTCTGTAATGCTATGCAAGCGCCGGCCATTTTTGAGAGCATTGGAATCCGACCATACTCTTTCCATGATCTAG
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| Protein seq | MSPYIIPLCLILFIIKASHSMGAQINETTIPQGSEINTAGPQSWVSPSGRFAFGFYPEGEGFSIGVWLVTDPSRFILWTAFRNDPPVSGGSILLTAGGSLQWIPPNQGFQGKVISAAPTSATSAAILDTGNFVLYDAKNQVIWSTFGTPTDTLLPGQNLPPGNQLFSSVSNTNHATGKYRLSNQPDGNLVMYPIGAIDPDSAYWNTGTYAQNFLLTLTLDPNGTLWLFDRNSPYRMVLFLTNQSLSASPDSESYYHLTLDADGILRLYSHVFFKQGGAPKTKVEWLVPPSNDRCSVKGVCGPNSFCQVTSSGETSCSCLPGFEFLSANQSTQGCWRAQTGGCTGNSPNGDIGLVATMVTVKNTSWSDRSYNVPPQSPTIEECKAICMSDCACEIAMFDSYCSKQMLPIRYGKRVPGSNTTLFVKVYSYEPKRTASATSIAMLTSGAALGMLSLVLLSVSVMLCKRRPFLRALESDHTLSMI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0230800 | RBH | 1.376084 | 0.997288 | 2.112099 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13870 | RBH | 0.0 | 0.0 | 0.064731 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0236400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007920 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007990 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008080 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008080 | RBH | 0.068073 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007720 | SBH | 0.0 | 1.411150 | 0.982343 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0129000 | SBH | 0.714084 | 1.613449 | 1.8815075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007680 | SBH | 0.0 | 0.0 | 0.329792 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0121500 | SBH | 0.3777165 | 0.6170725 | 0.020976 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007340 | SBH | 0.202908 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007420 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007250 | SBH | 0.0 | 2.477861 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007950 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007370 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007680 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007500 | SBH | 0.184127 | 3.083498 | 1.526589 |
