Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0227200 | OGI:08022270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:7760699-7762222 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACACAATAGGTGCAAGCAATACCAGTGTTTAAGTTATTTCTATTTATATAGAGAGTAAAGTAACCACAAGGACCTGATCCAGTAAAAGTAGACAGATATCCATATTACTTATAAACTAAACGAATTACTGTTAGGTTCATCTTCCGGTGCATTGCTCTTTGTCATCCTCGACATTTTCTTGAACCTGCCCATTTTTTCCTTTGCCTAAGCGACGAGAGAAGGAGCTGTGTTTTCAAGATCCACAAACCCTTGGGATGCCACTACATCATCCAACATGTTTGGACATGACATAAATTCAATGCAAGCATCCTTAAGCATGCCACAATGATGTTGATCAGCCAGAGCCAGTGTAGTTGCAACGTTACCAACACGAAGATTCTTGCAAAGGATGCTTTGACACAACAGCTTCAGCCTGTCCACAGCATATCTGTCCGCGGCGACAAGCAAGTGCCGGATCATCTCGCTGTTATCGTCTCCCTCAAGATCACGAATTGACGGCAACCAATCAGTATAGATGAACTGGAGCAGGGCCTTGAACACAACCGGTTGCATATCCACAATGCTGATAGGCTCTGTCCCGCTCTCCCTCATCGGCCCGCATAGCTCCGCTTTGAAGACAGGAGACCGCATCGCCAGCACAAGCTTGTGCGCCGGGAAGGTCTCCCCCGCGACATCGAACACCACATCTGCCCCCTCCTTGGACTCCAGCAGATCGCCGAGTTGCTGCATCATGTTGCTCGGCGGCACCTTGATCCTCGGGACTGGTCTAGCTCTCGACACCCTCGGCTCCTTCTTGACAGTGACCACACACTCCAGGGTAATCCGATCGTCGACGAGATACGGCGGCGCCTCGAATTCGGTCCTCTTCATCTTGAGACAGCTGACCCTGTTGGATTCATCGGCATTGAACACCTTGAATGTCTTGGCATCCGGCTGCGCCGGCGCAGCAGAGGAGGCGAGGCCGGTGGTCTGGTCGACCAGCCTGACGTCGCAGCACGCCCGCACCTTGCTTCCCCCCTGGCTCTGGAGCTCGAGGAAGGCGGTGACGTTGTCTTCCTCGTCGTCGAGGAGGATGACGTGGGTGTCCGGGAAGAGGAGGATGGCCCAGTGGAGGCCGCCGACGACGAAGGTCCCCGACGTGACGTGCTCCTCGCGGCCCCTCCCCTTCATCTGGCTGTACCCCACGATGTCGAACACGTGGGTGGCCTCCGCCGTGTTGGGCACCACCGTCGAGACCGTCCTCGGCACCGACTCCATCTGGTGCCGCTTCATGCCGCCGCCGCCGCGTCGGAGGTGGAGGGCGGACGAACGGATTGGGGAAAAAAGAAAGAAAGAAAGAAAGAAAGAATCGAACCACCGGCGGCGGCACTGCGAAGGAAGGAAGGGCGGGTTAGTACGGCAAGCCGGAGCGGCGGAGGGGAGGGGAGAGGGTGGAGGGGATCGAACCTTGAGAAGATCGCCGGCGGCGGCGGCGGCGGCGGTGGCGGATGGAGGGGAAGACGAGGACGAGGGAGCCCAATAGC
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| CDS seq | ATGAAGCGGCACCAGATGGAGTCGGTGCCGAGGACGGTCTCGACGGTGGTGCCCAACACGGCGGAGGCCACCCACGTGTTCGACATCGTGGGGTACAGCCAGATGAAGGGGAGGGGCCGCGAGGAGCACGTCACGTCGGGGACCTTCGTCGTCGGCGGCCTCCACTGGGCCATCCTCCTCTTCCCGGACACCCACGTCATCCTCCTCGACGACGAGGAAGACAACGTCACCGCCTTCCTCGAGCTCCAGAGCCAGGGGGGAAGCAAGGTGCGGGCGTGCTGCGACGTCAGGCTGGTCGACCAGACCACCGGCCTCGCCTCCTCTGCTGCGCCGGCGCAGCCGGATGCCAAGACATTCAAGGTGTTCAATGCCGATGAATCCAACAGGGTCAGCTGTCTCAAGATGAAGAGGACCGAATTCGAGGCGCCGCCGTATCTCGTCGACGATCGGATTACCCTGGAGTGTGTGGTCACTGTCAAGAAGGAGCCGAGGGTGTCGAGAGCTAGACCAGTCCCGAGGATCAAGGTGCCGCCGAGCAACATGATGCAGCAACTCGGCGATCTGCTGGAGTCCAAGGAGGGGGCAGATGTGGTGTTCGATGTCGCGGGGGAGACCTTCCCGGCGCACAAGCTTGTGCTGGCGATGCGGTCTCCTGTCTTCAAAGCGGAGCTATGCGGGCCGATGAGGGAGAGCGGGACAGAGCCTATCAGCATTGTGGATATGCAACCGGTTGTGTTCAAGGCCCTGCTCCAGTTCATCTATACTGATTGGTTGCCGTCAATTCGTGATCTTGAGGGAGACGATAACAGCGAGATGATCCGGCACTTGCTTGTCGCCGCGGACAGATATGCTGTGGACAGGCTGAAGCTGTTGTGTCAAAGCATCCTTTGCAAGAATCTTCGTGTTGGTAACGTTGCAACTACACTGGCTCTGGCTGATCAACATCATTGTGGCATGCTTAAGGATGCTTGCATTGAATTTATGTCATGTCCAAACATGTTGGATGATGTAGTGGCATCCCAAGGGTTTGTGGATCTTGAAAACACAGCTCCTTCTCTCGTCGCTTAG
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| Protein seq | MKRHQMESVPRTVSTVVPNTAEATHVFDIVGYSQMKGRGREEHVTSGTFVVGGLHWAILLFPDTHVILLDDEEDNVTAFLELQSQGGSKVRACCDVRLVDQTTGLASSAAPAQPDAKTFKVFNADESNRVSCLKMKRTEFEAPPYLVDDRITLECVVTVKKEPRVSRARPVPRIKVPPSNMMQQLGDLLESKEGADVVFDVAGETFPAHKLVLAMRSPVFKAELCGPMRESGTEPISIVDMQPVVFKALLQFIYTDWLPSIRDLEGDDNSEMIRHLLVAADRYAVDRLKLLCQSILCKNLRVGNVATTLALADQHHCGMLKDACIEFMSCPNMLDDVVASQGFVDLENTAPSLVA |
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| Function | BTB/POZ and MATH domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9M8J9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0227200 | OsNip_08t0227200-02 | Chr08 | 7760699 | 7762222 | - | RAP2018-11-26 | ||
| CDS seq | ATGAAGCGGCACCAGATGGAGTCGGTGCCGAGGACGGTCTCGACGGTGGTGCCCAACACGGCGGAGGCCACCCACGTGTTCGACATCGTGGGGTACAGCCAGATGAAGGGGAGGGGCCGCGAGGAGCACGTCACGTCGGGGACCTTCGTCGTCGGCGGCCTCCACTGGGCCATCCTCCTCTTCCCGGACACCCACGTCATCCTCCTCGACGACGAGGAAGACAACGTCACCGCCTTCCTCGAGCTCCAGAGCCAGGGGGGAAGCAAGGTGCGGGCGTGCTGCGACGTCAGGCTGGTCGACCAGACCACCGGCCTCGCCTCCTCTGCTGCGCCGGCGCAGCCGGATGCCAAGACATTCAAGGTGTTCAATGCCGATGAATCCAACAGGGTCAGCTGTCTCAAGATGAAGAGGACCGAATTCGAGGCGCCGCCGTATCTCGTCGACGATCGGATTACCCTGGAGTGTGTGGTCACTGTCAAGAAGGAGCCGAGGGTGTCGAGAGCTAGACCAGTCCCGAGGATCAAGGTGCCGCCGAGCAACATGATGCAGCAACTCGGCGATCTGCTGGAGTCCAAGGAGGGGGCAGATGTGGTGTTCGATGTCGCGGGGGAGACCTTCCCGGCGCACAAGCTTGTGCTGGCGATGCGGTCTCCTGTCTTCAAAGCGGAGCTATGCGGGCCGATGAGGGAGAGCGGGACAGAGCCTATCAGCATTGTGGATATGCAACCGGTTGTGTTCAAGGCCCTGCTCCAGTTCATCTATACTGATTGGTTGCCGTCAATTCGTGATCTTGAGGGAGACGATAACAGCGAGATGATCCGGCACTTGCTTGTCGCCGCGGACAGATATGCTGTGGACAGGCTGAAGCTGTTGTGTCAAAGCATCCTTTGCAAGAATCTTCGTGTTGGTAACGTTGCAACTACACTGGCTCTGGCTGATCAACATCATTGTGGCATGCTTAAGGATGCTTGCATTGAATTTATGTCATGTCCAAACATGTTGGATGATGTAGTGGCATCCCAAGGGTTTGTGGATCTTGAAAACACAGCTCCTTCTCTCGTCGCTTAG
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| Protein seq | MKRHQMESVPRTVSTVVPNTAEATHVFDIVGYSQMKGRGREEHVTSGTFVVGGLHWAILLFPDTHVILLDDEEDNVTAFLELQSQGGSKVRACCDVRLVDQTTGLASSAAPAQPDAKTFKVFNADESNRVSCLKMKRTEFEAPPYLVDDRITLECVVTVKKEPRVSRARPVPRIKVPPSNMMQQLGDLLESKEGADVVFDVAGETFPAHKLVLAMRSPVFKAELCGPMRESGTEPISIVDMQPVVFKALLQFIYTDWLPSIRDLEGDDNSEMIRHLLVAADRYAVDRLKLLCQSILCKNLRVGNVATTLALADQHHCGMLKDACIEFMSCPNMLDDVVASQGFVDLENTAPSLVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.506522 | 0.985008 | 1.480506 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13070 | RBH | 0.301099 | 0.582356 | 0.371038 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0227200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007510 | RBH | 0.398869 | 0.0 | 1.131266 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007580 | RBH | 0.156189 | 0.0 | 0.387892 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007690 | RBH | 0.254162 | 0.0 | 1.993912 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007650 | RBH | 0.086598 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007530 | SBH | 2.107724 | 0.0 | 3.412524 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0126500 | RBH | 1.616356 | 3.4762045 | 3.742686 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007470 | RBH | 0.090595 | 0.289926 | 0.225446 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0118400 | RBH | 0.014062 | 0 | 0.050817 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007100 | RBH | 0.071148 | 0.170659 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007180 | RBH | 0.109157 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007060 | RBH | 1.345629 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007140 | RBH | 0.135183 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007470 | SBH | 0.101485 | 0.627683 | 1.273801 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007270 | SBH | 0.0 | 2.714241 | 0.549895 |
