Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0227100 | OGI:08022230 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:7756668-7758169 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTATCCAAATTTTGATCAAGGGCGCACAAAATAAATTTTGCGGAAGGACAACAGGTTATATGTCAGTTAATGGAAACAAAGCTTGCAAAGAGATAAAATAAACCTATCTATCATATAAACAGATAAGCACCACAAAGGTGCTCCCAAAATGTAAAGAGTAAACTGACTACGGTACCTGATTTAGGAAGAGAAGAAAGAATACCCATATCCCTTATAAATTAAGCTAACAGCTCTTAGACTCATCTTGTGGAACACTACCCCTTGACATTTTGTTGAGCTTCGACATCTGCGCCACGGCATCCGCCAAGACAGAAGGTGCCATTCTTTGGAGATCCTCATACCCTTTGCTCGCCACTACACCCTTCATCTTCTTTGAACATGACATAAATTCGATGCAAGCATCCTTCAGCTTGTCGCATTGATGCTGATCAGCCAGTGCCAGCGTAGTCGCGACATTGTGAACATTAAGATTCTTGCAAAGGATACCTTGGCATAGCAGCTTTAGCCTATCCACGGCGTATCTGTCCGCAGCAACGAGCAGGTGCCGGATCATTTCACAATTGTCGCGTCTCTCGAAACCGCGCGTCACGGGGAACTGATCGGTATAGATGAATTGCAGCAGGGCCCTGAAGACGGCGGGCTGCATATCAACGATGGTAATAGGCTGTGTTCCCGGCTCCCTCAGCAGCCCGCAGAGCTCCGCCTTGAACACTGGCGACCGCATCGCGAGCACGAGCTTGTGCACGGAGAACGGCTCCCCCGCGACATCGAAGGTGACATCTGCGCCCTCCTTGCTCTGCAGCAGGTTGGCAAACTGCCGCTTGATGTCGGGCGGCGGCACCAAGATGCGCGGGAACCGGGCGGTCCTCGACACCCGGGGGTCTCTCCTGACGACGACATGGAACTCCATGGTGAGGCGATCATCCACGAGGTAGGGCTCCACCTCGATCTGGCCCCTGGGGATCATCATACAGTGGAGGGCCTTGCACTTGTCGCCGAACGCCAGGGCGTACCTGAGGAAGGGCTGCGGCGTGGAGGCCACCCCGGTGCGCTGGTCGACGAGCTTGACCTCGCAGGAGACCCACACGCGCGGGGTGGGCGCGTCGCCGAGGAGCCTGAGGTAGGCGGAGACGTCGTCGATGCCGGCGACGCCGTAGCCGTCGGCGTAGAGGCAGGCGACCCAGTCGAGGCCGGCGACGGAGAAGGCCCCCGACCTGATGGGCTCGTGGGCGCCCATCCCCTTGTGGTCGCTGTACCCGAAGATGTCGAACACGTGGACGCCCTCGCCGACGACGTCCGGGGCGCACGTCGACACCGTCTTCCACCCCGGCGTGAACTCCGGGGGCCCGCACGCCGCCGCCGCCGCCGACGACGACGACGGCATATCTAGGTGCGGGGCGGCGGGGCGGAGGGGATGGGAGGGGATCGGGCGGCGAGCGGCGGAGGTGGAGGAGACGGCGGCGAGGGGAGGGGATCGAATGCGAAGGGGATTTGGAGAAGGC
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| CDS seq | ATGCCGTCGTCGTCGTCGGCGGCGGCGGCGGCGTGCGGGCCCCCGGAGTTCACGCCGGGGTGGAAGACGGTGTCGACGTGCGCCCCGGACGTCGTCGGCGAGGGCGTCCACGTGTTCGACATCTTCGGGTACAGCGACCACAAGGGGATGGGCGCCCACGAGCCCATCAGGTCGGGGGCCTTCTCCGTCGCCGGCCTCGACTGGGTCGCCTGCCTCTACGCCGACGGCTACGGCGTCGCCGGCATCGACGACGTCTCCGCCTACCTCAGGCTCCTCGGCGACGCGCCCACCCCGCGCGTGTGGGTCTCCTGCGAGGTCAAGCTCGTCGACCAGCGCACCGGGGTGGCCTCCACGCCGCAGCCCTTCCTCAGGTACGCCCTGGCGTTCGGCGACAAGTGCAAGGCCCTCCACTGTATGATGATCCCCAGGGGCCAGATCGAGGTGGAGCCCTACCTCGTGGATGATCGCCTCACCATGGAGTTCCATGTCGTCGTCAGGAGAGACCCCCGGGTGTCGAGGACCGCCCGGTTCCCGCGCATCTTGGTGCCGCCGCCCGACATCAAGCGGCAGTTTGCCAACCTGCTGCAGAGCAAGGAGGGCGCAGATGTCACCTTCGATGTCGCGGGGGAGCCGTTCTCCGTGCACAAGCTCGTGCTCGCGATGCGGTCGCCAGTGTTCAAGGCGGAGCTCTGCGGGCTGCTGAGGGAGCCGGGAACACAGCCTATTACCATCGTTGATATGCAGCCCGCCGTCTTCAGGGCCCTGCTGCAATTCATCTATACCGATCAGTTCCCCGTGACGCGCGGTTTCGAGAGACGCGACAATTGTGAAATGATCCGGCACCTGCTCGTTGCTGCGGACAGATACGCCGTGGATAGGCTAAAGCTGCTATGCCAAGGTATCCTTTGCAAGAATCTTAATGTTCACAATGTCGCGACTACGCTGGCACTGGCTGATCAGCATCAATGCGACAAGCTGAAGGATGCTTGCATCGAATTTATGTCATGTTCAAAGAAGATGAAGGGTGTAGTGGCGAGCAAAGGGTATGAGGATCTCCAAAGAATGGCACCTTCTGTCTTGGCGGATGCCGTGGCGCAGATGTCGAAGCTCAACAAAATGTCAAGGGGTAGTGTTCCACAAGATGAGTCTAAGAGCTGTTAG
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| Protein seq | MPSSSSAAAAACGPPEFTPGWKTVSTCAPDVVGEGVHVFDIFGYSDHKGMGAHEPIRSGAFSVAGLDWVACLYADGYGVAGIDDVSAYLRLLGDAPTPRVWVSCEVKLVDQRTGVASTPQPFLRYALAFGDKCKALHCMMIPRGQIEVEPYLVDDRLTMEFHVVVRRDPRVSRTARFPRILVPPPDIKRQFANLLQSKEGADVTFDVAGEPFSVHKLVLAMRSPVFKAELCGLLREPGTQPITIVDMQPAVFRALLQFIYTDQFPVTRGFERRDNCEMIRHLLVAADRYAVDRLKLLCQGILCKNLNVHNVATTLALADQHQCDKLKDACIEFMSCSKKMKGVVASKGYEDLQRMAPSVLADAVAQMSKLNKMSRGSVPQDESKSC |
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| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0227100 | OsNip_08t0227100-01 | Chr08 | 7756668 | 7758169 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGTCGTCGTCGTCGGCGGCGGCGGCGGCGTGCGGGCCCCCGGAGTTCACGCCGGGGTGGAAGACGGTGTCGACGTGCGCCCCGGACGTCGTCGGCGAGGGCGTCCACGTGTTCGACATCTTCGGGTACAGCGACCACAAGGGGATGGGCGCCCACGAGCCCATCAGGTCGGGGGCCTTCTCCGTCGCCGGCCTCGACTGGGTCGCCTGCCTCTACGCCGACGGCTACGGCGTCGCCGGCATCGACGACGTCTCCGCCTACCTCAGGCTCCTCGGCGACGCGCCCACCCCGCGCGTGTGGGTCTCCTGCGAGGTCAAGCTCGTCGACCAGCGCACCGGGGTGGCCTCCACGCCGCAGCCCTTCCTCAGGTACGCCCTGGCGTTCGGCGACAAGTGCAAGGCCCTCCACTGTATGATGATCCCCAGGGGCCAGATCGAGGTGGAGCCCTACCTCGTGGATGATCGCCTCACCATGGAGTTCCATGTCGTCGTCAGGAGAGACCCCCGGGTGTCGAGGACCGCCCGGTTCCCGCGCATCTTGGTGCCGCCGCCCGACATCAAGCGGCAGTTTGCCAACCTGCTGCAGAGCAAGGAGGGCGCAGATGTCACCTTCGATGTCGCGGGGGAGCCGTTCTCCGTGCACAAGCTCGTGCTCGCGATGCGGTCGCCAGTGTTCAAGGCGGAGCTCTGCGGGCTGCTGAGGGAGCCGGGAACACAGCCTATTACCATCGTTGATATGCAGCCCGCCGTCTTCAGGGCCCTGCTGCAATTCATCTATACCGATCAGTTCCCCGTGACGCGCGGTTTCGAGAGACGCGACAATTGTGAAATGATCCGGCACCTGCTCGTTGCTGCGGACAGATACGCCGTGGATAGGCTAAAGCTGCTATGCCAAGGTATCCTTTGCAAGAATCTTAATGTTCACAATGTCGCGACTACGCTGGCACTGGCTGATCAGCATCAATGCGACAAGCTGAAGGATGCTTGCATCGAATTTATGTCATGTTCAAAGAAGATGAAGGGTGTAGTGGCGAGCAAAGGGTATGAGGATCTCCAAAGAATGGCACCTTCTGTCTTGGCGGATGCCGTGGCGCAGATGTCGAAGCTCAACAAAATGTCAAGGGGTAGTGTTCCACAAGATGAGTCTAAGAGCTGTTAG
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| Protein seq | MPSSSSAAAAACGPPEFTPGWKTVSTCAPDVVGEGVHVFDIFGYSDHKGMGAHEPIRSGAFSVAGLDWVACLYADGYGVAGIDDVSAYLRLLGDAPTPRVWVSCEVKLVDQRTGVASTPQPFLRYALAFGDKCKALHCMMIPRGQIEVEPYLVDDRLTMEFHVVVRRDPRVSRTARFPRILVPPPDIKRQFANLLQSKEGADVTFDVAGEPFSVHKLVLAMRSPVFKAELCGLLREPGTQPITIVDMQPAVFRALLQFIYTDQFPVTRGFERRDNCEMIRHLLVAADRYAVDRLKLLCQGILCKNLNVHNVATTLALADQHQCDKLKDACIEFMSCSKKMKGVVASKGYEDLQRMAPSVLADAVAQMSKLNKMSRGSVPQDESKSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.812729 | 0.827954 | 1.985091 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13060 | RBH | 0.548878 | 0.556127 | 0.510322 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0227100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007500 | RBH | 0.127163 | 0.0 | 0.425929 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007570 | RBH | 0.178797 | 0.0 | 0.841761 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007680 | RBH | 0.471596 | 0.0 | 1.310502 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007640 | RBH | 0.133796 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007530 | RBH | 2.107724 | 0.0 | 3.412524 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0126500 | SBH | 1.616356 | 3.4762045 | 3.742686 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007460 | RBH | 0.269326 | 0.000000 | 0.367085 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0118300 | RBH | 2.2155695 | 13.0185285 | 6.4215505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007090 | RBH | 0.029544 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007170 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007060 | SBH | 1.345629 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007700 | RBH | 0.0 | 0.166942 | 0.285723 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0007140 | SBH | 0.135183 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007470 | RBH | 0.101485 | 0.627683 | 1.273801 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007270 | RBH | 0.0 | 2.714241 | 0.549895 |
