Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0203201 | OGI:08015860 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5988432-5988931 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCCTGGACACTATATGAGAGCGGGCAAGCACTCGGGATCGTAGACCCAAAACTCAAGGAATTCAATGAGAAGGAAGCCTTGAGAGTCATCTGTGCCGCACTCCTTTGCACTCAAGGGTCACCACACCAGCGGCCATCAATGTCCAGAGTCATGGCTATCCTAGCCGGAGATATTGAGGTGACTGAGGTGGTGACGAAGCCGAGCTACATCACTGAATGGCAGCTCAGAGGAGGAGGTGACACTAGCTATGCCACCAGCTCCTACTACTCTGGATCTACTACTGGTGAGTTCAGGGAGAAGAGGGAGACCGCCCCTCTCAACTCGTATCCAGGGATAGCTGGACGCATTGACGAAGGAAGGTGAATGCAGAGCTGCAAAGTGCAAACCATTGTTGTTCCTGGTTTCAAGTGACAATTTTGGATATTATTCCTGCCTATATAATTGTATGTTGATGTAAGTTGCAGAAAACAAATACGAAAGTACTTATTCTGATTTTTTT
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| CDS seq | GCCTGGACACTATATGAGAGCGGGCAAGCACTCGGGATCGTAGACCCAAAACTCAAGGAATTCAATGAGAAGGAAGCCTTGAGAGTCATCTGTGCCGCACTCCTTTGCACTCAAGGGTCACCACACCAGCGGCCATCAATGTCCAGAGTCATGGCTATCCTAGCCGGAGATATTGAGGTGACTGAGGTGGTGACGAAGCCGAGCTACATCACTGAATGGCAGCTCAGAGGAGGAGGTGACACTAGCTATGCCACCAGCTCCTACTACTCTGGATCTACTACTGGTGAGTTCAGGGAGAAGAGGGAGACCGCCCCTCTCAACTCGTATCCAGGGATAGCTGGACGCATTGACGAAGGAAGGTGA |
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| Protein seq | AWTLYESGQALGIVDPKLKEFNEKEALRVICAALLCTQGSPHQRPSMSRVMAILAGDIEVTEVVTKPSYITEWQLRGGGDTSYATSSYYSGSTTGEFREKRETAPLNSYPGIAGRIDEGR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 [UniProtKB/Swiss-Prot:C0LGH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0203201 | OsNip_08t0203201-00 | Chr08 | 5988432 | 5988931 | + | RAP2018-11-26 | ||
| CDS seq | GCCTGGACACTATATGAGAGCGGGCAAGCACTCGGGATCGTAGACCCAAAACTCAAGGAATTCAATGAGAAGGAAGCCTTGAGAGTCATCTGTGCCGCACTCCTTTGCACTCAAGGGTCACCACACCAGCGGCCATCAATGTCCAGAGTCATGGCTATCCTAGCCGGAGATATTGAGGTGACTGAGGTGGTGACGAAGCCGAGCTACATCACTGAATGGCAGCTCAGAGGAGGAGGTGACACTAGCTATGCCACCAGCTCCTACTACTCTGGATCTACTACTGGTGAGTTCAGGGAGAAGAGGGAGACCGCCCCTCTCAACTCGTATCCAGGGATAGCTGGACGCATTGACGAAGGAAGGTGA
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| Protein seq | AWTLYESGQALGIVDPKLKEFNEKEALRVICAALLCTQGSPHQRPSMSRVMAILAGDIEVTEVVTKPSYITEWQLRGGGDTSYATSSYYSGSTTGEFREKRETAPLNSYPGIAGRIDEGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.488287 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10290 | RBH | 0.129179 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0203201 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006620 | RBH | 0.0 | 5.357691 | 0.219524 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006550 | RBH | 0.0 | 1.309236 | 0.343427 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006690 | RBH | 0.0 | 4.669083 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006540 | RBH | 0.016728 | 0.214865 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006570 | RBH | 0.153753 | 2.406008 | 1.422672 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0091300 | RBH | 0.386332 | 7.29209 | 0.278125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006300 | RBH | 0.0 | 0.239443 | 0.078989 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0093900 | SBH | 0.8972265 | 5.352218 | 1.558977 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006240 | RBH | 0.000000 | 0.038452 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006300 | RBH | 0.254700 | 3.350631 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006330 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006570 | RBH | 0.000000 | 0.098799 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006340 | RBH | 0.000000 | 1.221540 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006400 | RBH | 0.0 | 2.034174 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006260 | RBH | 0.0 | 15.491233 | 0.000000 |
