Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0191900 | OGI:08014020 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5384447-5388799 | ||||||||
| Gene Symbol | CDE4 | ||||||||||
| DNA seq | GGCTCGCTGTCTCATCACTCTGTAACCGATAAGGCTGCCGCCATTGCTGCTGCTGCTGCTGCTTCCGCCGCGTCGCCTTCTCCGGCGATGGAGGCGGCGGCGGCGATTGGAGGGGCGCGGTCCCCGCTCTCCTTCTCCTCCAGCCTCTGGTAAGCGCGCGCGCGCCCTCCTCCTCCTCTCGCAGTAGCTCCCACTAGGCTCGCGCGGCGGCGCGGCGGCGCGGCGACTCGTGTTGAATTAGGGGGTTGGAGGTGGGGCTTTGGTGGGTTTGGGAGCTCGAATTTATGGGTAATGAGGTTTTTGTGCTGTGGTTTGCGGCAATTTCGGAAGAGGGTTTGGTGGATAAGGTCCCTGGGGATTTTTCTGTGGGCATCGTGGAGAGTGTGTGTGGTTATGTGATGTCCATTCAGGGTTGTTATCGCTAGGTTGTAAGTCTTTGGGTTCAATATGCTCCATTGCTCCAATATGTCATTTGATTTGAGGAAGCCGGTAAGCTTCGGTTTCTTCAAGCCTGTTTTGGCATGGTGGCAGTTAGTGATCACGACATGTGACGGTATCATGTGAATTGGGGTAAAGAATAAGGGGAAAGCATAACCTTTGGTTATTGAGCACGAGAGATAGCCTGTTATTGTACAAGTAATTCGATAGATTTACATCATTTCTTACTTGCTCAACATCAGTAAATTTGTTGTAGTCCACTTGTCTATAGTTGTCTATGTGATAGTATGACTTTTGTTGTGTTGCCTTTTCTTTTCATTTCGTTTTCTCACTTGATGACTGTTTCCTTGTATGACTCCGTTTGAAATATCTTTTATGCTGTCAGCAATGCAAAAGTATCCTGTGGTTTAGCTCTTCACAATGTGAAGATCAAGAGCAGTCGAAGGCTTGAGGTGGTTTGCCATGGAATGTTGACAACCAGAAAGTTCATGCAGAAGAAGAAGAAAGAGGAGGTATATAAGGATGCTGCTGATGAAGCAGAGCAGAAGAATTGGAGGATGATGATGAGGGAGATAGAAGAGTCAGGATCAGCTGTCTCCATTCTGAAGACTCAGCGAAGCAAGAAAGAACCACTGCCAAGGGATGCTGTTCTTGGAACTCTTATGCGGTTCAAACAGCTCAAGAAATGGAACCTGGTCAGCGAGGTATATTCTCTTGCAGCATATTATCCAATATGAAGCCGTCCTGTTGACTAACTAGCTAGCTGCTATTGTTTCATCTACAATAGAATGTGATTTGAAGAGTTCATAAATATTTGAATTTCTATGCCTCATTTTTCAGATTCTTGAATGGCTACGCACACAACATTGGTGGAACTTCAGTGAGATGGACTTTTTGATGCTTGTTACGGCCTATGGAAAATTAGGAGATTTTAGCAGAGCGGAGAGGGTCCTGAAGTATATGAACAAGAAAGGTTACAAACCAAGCGTGATATCTCAGACTGCACTGATGGAAGCATATGGAAGAGCCAAGCAGTATCGTAAGGCTGAAGCAGTGTTTCGCAGGATGCAAACATCAGGCCCTGAGCCATCAGCTGTGACATATCAAATCATTTTGAAATCTTTTGTTGAGGTGAGCATTTAATCTACCTTGCCATCCAATCTAAAGTCTTGTGATTTAGCCAGTGAAACACATGAGAATGTAGGACCATATATAATCATTAATCTTTTGTCAGATTGAATGTTAACAAGTCAGTCTACTATGATTTATCATAAGACATGAAACTTTAACATTTTTGTTTGATAAATGTTTACAATTTTGTGAACTCTTTTTGGTGTAACCTCAAGGAGTACCTGGCAGCAGGTGGTTGGTTACTTGGTTGGGGGGCATAATATGATTCCCCCCCCCCCCAAGGTGGCACACCATATAAATAAACACACTCACTGAAGCTTTTTCACAATAATGTTGTGTTTCAGACTTCCTGTGCATAGTATAGTTGGCATTTACGGATTTACTTGCATGCTTGCCTTGTCTCATGTGTCCTTGGTGTGGGCGTAAGAGCTCTGAATTTTATATGGTGTACATGCACCAATCCTGTAGAGAATTCATCTGTACATGCTCCAATCAAATGATCACCAATCCTGTAGAGATCTCATGTGTACATGCTCAAAATCAGATAGATTTGTGATATGCTATAGTGTCTCGACCATAAATGTCATTTTCTGCAAAAGTCACTTGTTGCTCTGATCCCATCCTGTTGCACACTCCAAGCATCGATAGTGCCTGGTGCCTCTTTGCTGACATCTCATTGAATCCTTTATAAATTATTTATCTCTTGTATTCTGGTCATTGTCCTAAATACTGCTCCACGGTCGTTTCAACTTATCTTAGACACAAACAAAATTATTTGTTATGATTATAGCATCTCCCTTAATTCCTCTACATTTGTCCATAACAATTGTGCTGGTGGTTGCTGACAGGGTGACAAATACAAGGAAGCTGAAGCTATTTTTGAGGACCTTCTTAATGAGAAAAGAGCTTCTTTTAAGCCTGACCAGAAGATGTTTCATATGATGATTTATATGTACAAGAAAGCTGGCGACTATGCCCAGGCTCGGAAACTATTTGCTCAGATGTCAGAGAGAGGAATCCCTCTATCAACAGTCACCTTTAATAGTTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAGTATTTATGATCAGGTACATCCCCAGCTTAAGTGCACAATCAAGTATATCTATATTTTTTGTTCCTTTAACGAATTCTATAACTTTAGATGCAAAGAACTGCGCTAAAACCAGATGTTGTGAGCTACTCCCTGCTCATCAAAGCTTATGGAAAAGCTAGAAGGGAAGAAGAAGCATTAGCAGTTTTTGAAGAGATGCTTGATGCAGGAGTCAGGTTCAATCTCCTTTAAATATTTTCTTGGGTTGATACAATTTAAGCATTGATCCCTTTGTTGGACTCCCTGTAATCATGAACATAGTTTTTGGCCAAATTGGTTAAAGCCTTAATGTTTAAGCTGTGAGCTCTAAGGACATCTGTTAGCCATGTGAAGTTTCAGATAACAGTGTTTTGATCTGATCATACTTTTAGCAACATATTTCTCTCATTCTTTTTTGTGTTAAGTGAAAATATGCCACTCGTAAGCACATTAAATAGTTTTTTGCTATGTACCAATGACATGTTATGTGATGCATTAGCAATTCATGTCAAGCAATGTGCCATCAAAATTTTTGTAACCAAAGGGAACTAGTTTGTATTTTCTTTTCCATGAAAGCAAGTCAATACTCTGTTACATCCACAACTTAGAAAAAAAAAACAACTTTTGACAAAGAATATCTGCTTGAGATCAGTATTTTTCTGTAAAAGATATTCCAAAACATTCTAATGGTGGTCAATTTGATGTTAACTTTCCAGGCCAACACGCAAGTCGTATAACATTTTGATTGATGCATTTGCAATATCTGGATTGGTAGAAGAAGCTCATACAGTTTTCAAGGCCATGAGAAGACACAGGTACAAATTTTATCTGTCGACTTAAATTTCAAGACTAATTGAACTGTAGGTTTCTCACCTTAACACATTTTTTGCTTTGCAGGGTTGAGCCTGATCTCTGTTCTTACACAACAATGGTCTTAGCTTATGTGAATGCTTCTGACATGGATGGGGCTGAGAAATTCTTCCGCCGGATTAAAGAGGACGGTTTGAAGCCAAATGTTGTTGTTTATGGAACTTTGATGAAGGGCTACTCGAAATTAAATAATGTTGAGAGAGTAATGAGAGTGTACGAGAGAATGCGGATGCAGGGTGTTGAACCCAATCAGACTATTTATACTACCATCATGGATGTGCATGGAAGGAACTCTGATTTTGGAAATGCTGTCATCTGGTTCAAAGAAATGGAGGCTCGTGGGTACCCAGCAGACAAGAAAGCAAAGAATATCCTTCTTTCTCTTGCCAAAACTCCTGAAGAACAAGAAGAAGCGAATGAATTGACAGGGAATTGTGCAATTCAGCTGGAAGCAAAACCCGATGGAACAACATATGGTTTAGAAATAAATGGTACTGGAAATGAGTATAAACATGGACAAAATGATGCTGGGCATGACAGTTTGTTAGATGGCGCATGCACCACAAGTAATCGAAATGGTAAAGTCGAGGCTGGGAAAGGTCATTTTGAGGAGGTTAATGACGATGATGATGATGATGATGACGATGATTACGATGAAGAGTTAAATTTTGTTTCTTTCAAAGATAAGCGAGAACTAAATTTTGCCACTTGATGTTTTGATTAATGTATATCTTTATATTCCAAACTTGTGATGGCATTTCCTATACAAAGGTATCCATGCTGTTTGTGAAATGTCAAATATAGCTATTTTTATG
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| CDS seq | ATGGAGGCGGCGGCGGCGATTGGAGGGGCGCGGTCCCCGCTCTCCTTCTCCTCCAGCCTCTGCAATGCAAAAGTATCCTGTGGTTTAGCTCTTCACAATGTGAAGATCAAGAGCAGTCGAAGGCTTGAGGTGGTTTGCCATGGAATGTTGACAACCAGAAAGTTCATGCAGAAGAAGAAGAAAGAGGAGGTATATAAGGATGCTGCTGATGAAGCAGAGCAGAAGAATTGGAGGATGATGATGAGGGAGATAGAAGAGTCAGGATCAGCTGTCTCCATTCTGAAGACTCAGCGAAGCAAGAAAGAACCACTGCCAAGGGATGCTGTTCTTGGAACTCTTATGCGGTTCAAACAGCTCAAGAAATGGAACCTGGTCAGCGAGATTCTTGAATGGCTACGCACACAACATTGGTGGAACTTCAGTGAGATGGACTTTTTGATGCTTGTTACGGCCTATGGAAAATTAGGAGATTTTAGCAGAGCGGAGAGGGTCCTGAAGTATATGAACAAGAAAGGTTACAAACCAAGCGTGATATCTCAGACTGCACTGATGGAAGCATATGGAAGAGCCAAGCAGTATCGTAAGGCTGAAGCAGTGTTTCGCAGGATGCAAACATCAGGCCCTGAGCCATCAGCTGTGACATATCAAATCATTTTGAAATCTTTTGTTGAGGGTGACAAATACAAGGAAGCTGAAGCTATTTTTGAGGACCTTCTTAATGAGAAAAGAGCTTCTTTTAAGCCTGACCAGAAGATGTTTCATATGATGATTTATATGTACAAGAAAGCTGGCGACTATGCCCAGGCTCGGAAACTATTTGCTCAGATGTCAGAGAGAGGAATCCCTCTATCAACAGTCACCTTTAATAGTTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAGTATTTATGATCAGATGCAAAGAACTGCGCTAAAACCAGATGTTGTGAGCTACTCCCTGCTCATCAAAGCTTATGGAAAAGCTAGAAGGGAAGAAGAAGCATTAGCAGTTTTTGAAGAGATGCTTGATGCAGGAGTCAGGCCAACACGCAAGTCGTATAACATTTTGATTGATGCATTTGCAATATCTGGATTGGTAGAAGAAGCTCATACAGTTTTCAAGGCCATGAGAAGACACAGGGTTGAGCCTGATCTCTGTTCTTACACAACAATGGTCTTAGCTTATGTGAATGCTTCTGACATGGATGGGGCTGAGAAATTCTTCCGCCGGATTAAAGAGGACGGTTTGAAGCCAAATGTTGTTGTTTATGGAACTTTGATGAAGGGCTACTCGAAATTAAATAATGTTGAGAGAGTAATGAGAGTGTACGAGAGAATGCGGATGCAGGGTGTTGAACCCAATCAGACTATTTATACTACCATCATGGATGTGCATGGAAGGAACTCTGATTTTGGAAATGCTGTCATCTGGTTCAAAGAAATGGAGGCTCGTGGGTACCCAGCAGACAAGAAAGCAAAGAATATCCTTCTTTCTCTTGCCAAAACTCCTGAAGAACAAGAAGAAGCGAATGAATTGACAGGGAATTGTGCAATTCAGCTGGAAGCAAAACCCGATGGAACAACATATGGTTTAGAAATAAATGGTACTGGAAATGAGTATAAACATGGACAAAATGATGCTGGGCATGACAGTTTGTTAGATGGCGCATGCACCACAAGTAATCGAAATGGTAAAGTCGAGGCTGGGAAAGGTCATTTTGAGGAGGTTAATGACGATGATGATGATGATGATGACGATGATTACGATGAAGAGTTAAATTTTGTTTCTTTCAAAGATAAGCGAGAACTAAATTTTGCCACTTGA
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| Protein seq | MEAAAAIGGARSPLSFSSSLCNAKVSCGLALHNVKIKSSRRLEVVCHGMLTTRKFMQKKKKEEVYKDAADEAEQKNWRMMMREIEESGSAVSILKTQRSKKEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNYKEVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDGTTYGLEINGTGNEYKHGQNDAGHDSLLDGACTTSNRNGKVEAGKGHFEEVNDDDDDDDDDDYDEELNFVSFKDKRELNFAT |
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| Function | Pentatricopeptide repeat-containing protein At3g59040 [UniProtKB/Swiss-Prot:Q9LYT2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0191900 | OsNip_08t0191900-01 | Chr08 | 5384447 | 5388799 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGGCGGCGGCGGCGATTGGAGGGGCGCGGTCCCCGCTCTCCTTCTCCTCCAGCCTCTGCAATGCAAAAGTATCCTGTGGTTTAGCTCTTCACAATGTGAAGATCAAGAGCAGTCGAAGGCTTGAGGTGGTTTGCCATGGAATGTTGACAACCAGAAAGTTCATGCAGAAGAAGAAGAAAGAGGAGGTATATAAGGATGCTGCTGATGAAGCAGAGCAGAAGAATTGGAGGATGATGATGAGGGAGATAGAAGAGTCAGGATCAGCTGTCTCCATTCTGAAGACTCAGCGAAGCAAGAAAGAACCACTGCCAAGGGATGCTGTTCTTGGAACTCTTATGCGGTTCAAACAGCTCAAGAAATGGAACCTGGTCAGCGAGATTCTTGAATGGCTACGCACACAACATTGGTGGAACTTCAGTGAGATGGACTTTTTGATGCTTGTTACGGCCTATGGAAAATTAGGAGATTTTAGCAGAGCGGAGAGGGTCCTGAAGTATATGAACAAGAAAGGTTACAAACCAAGCGTGATATCTCAGACTGCACTGATGGAAGCATATGGAAGAGCCAAGCAGTATCGTAAGGCTGAAGCAGTGTTTCGCAGGATGCAAACATCAGGCCCTGAGCCATCAGCTGTGACATATCAAATCATTTTGAAATCTTTTGTTGAGGGTGACAAATACAAGGAAGCTGAAGCTATTTTTGAGGACCTTCTTAATGAGAAAAGAGCTTCTTTTAAGCCTGACCAGAAGATGTTTCATATGATGATTTATATGTACAAGAAAGCTGGCGACTATGCCCAGGCTCGGAAACTATTTGCTCAGATGTCAGAGAGAGGAATCCCTCTATCAACAGTCACCTTTAATAGTTTGATGTCATTTGAAACAAATTACAAGGAAGTTTCAAGTATTTATGATCAGATGCAAAGAACTGCGCTAAAACCAGATGTTGTGAGCTACTCCCTGCTCATCAAAGCTTATGGAAAAGCTAGAAGGGAAGAAGAAGCATTAGCAGTTTTTGAAGAGATGCTTGATGCAGGAGTCAGGCCAACACGCAAGTCGTATAACATTTTGATTGATGCATTTGCAATATCTGGATTGGTAGAAGAAGCTCATACAGTTTTCAAGGCCATGAGAAGACACAGGGTTGAGCCTGATCTCTGTTCTTACACAACAATGGTCTTAGCTTATGTGAATGCTTCTGACATGGATGGGGCTGAGAAATTCTTCCGCCGGATTAAAGAGGACGGTTTGAAGCCAAATGTTGTTGTTTATGGAACTTTGATGAAGGGCTACTCGAAATTAAATAATGTTGAGAGAGTAATGAGAGTGTACGAGAGAATGCGGATGCAGGGTGTTGAACCCAATCAGACTATTTATACTACCATCATGGATGTGCATGGAAGGAACTCTGATTTTGGAAATGCTGTCATCTGGTTCAAAGAAATGGAGGCTCGTGGGTACCCAGCAGACAAGAAAGCAAAGAATATCCTTCTTTCTCTTGCCAAAACTCCTGAAGAACAAGAAGAAGCGAATGAATTGACAGGGAATTGTGCAATTCAGCTGGAAGCAAAACCCGATGGAACAACATATGGTTTAGAAATAAATGGTACTGGAAATGAGTATAAACATGGACAAAATGATGCTGGGCATGACAGTTTGTTAGATGGCGCATGCACCACAAGTAATCGAAATGGTAAAGTCGAGGCTGGGAAAGGTCATTTTGAGGAGGTTAATGACGATGATGATGATGATGATGACGATGATTACGATGAAGAGTTAAATTTTGTTTCTTTCAAAGATAAGCGAGAACTAAATTTTGCCACTTGA
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| Protein seq | MEAAAAIGGARSPLSFSSSLCNAKVSCGLALHNVKIKSSRRLEVVCHGMLTTRKFMQKKKKEEVYKDAADEAEQKNWRMMMREIEESGSAVSILKTQRSKKEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWWNFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYKPSVISQTALMEAYGRAKQYRKAEAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSLMSFETNYKEVSSIYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSDFGNAVIWFKEMEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQLEAKPDGTTYGLEINGTGNEYKHGQNDAGHDSLLDGACTTSNRNGKVEAGKGHFEEVNDDDDDDDDDDYDEELNFVSFKDKRELNFAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.128991 | 11.613644 | 6.250984 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09270 | RBH | 9.476883 | 7.878264 | 1.708269 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0191900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005990 | RBH | 5.128153 | 6.499137 | 6.482501 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005990 | RBH | 0.856347 | 2.007637 | 5.727568 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006070 | RBH | 6.963283 | 5.353433 | 19.397356 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005920 | RBH | 2.071781 | 0.132515 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005790 | RBH | 47.563602 | 6.298527 | 30.764326 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0081100 | RBH | 16.983845 | 10.524845 | 10.5963185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005630 | RBH | 4.280291 | 0.418953 | 1.391391 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0084100 | RBH | 11.9247965 | 5.498117 | 6.837478 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005690 | RBH | 0.863107 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005760 | RBH | 2.954459 | 9.674504 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005610 | RBH | 20.855667 | 9.120240 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005910 | RBH | 5.093614 | 0.460545 | 3.330294 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005730 | RBH | 2.198063 | 2.308995 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005710 | RBH | 3.033113 | 0.687536 | 4.770236 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005600 | RBH | 12.778552 | 14.622925 | 10.918509 |
