Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0178500 | OGI:08011600 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:4593671-4594173 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATTCCATCTCGATCATCTCCTCAGCTACTACTGCTTCATCGAATCGTCGAAGCATCAACAGCTATAGATCAAGTTCGAGAGGTTGATTCAGAGAGGCATTGCAAATTAGCAATGGCGAGCGCGGCGGCGGCGGTGGCGGCGAAGGCGTGGTGGACGGCGGCGATGAGCGTGGGCGCGGTGGAGGGGCTCAAGGACCAGTCGGGCCTCTGCCGCTGGAACTACGCGCTCCGGTCGCTGCACGGCGCCGCCATGGACACCCTGATGCTGCAGGTGCATGGCGGCGCCGGCGCCTCCTCGCCGGCGGCGGCGATGGCGGCGGAGAGGCCGGAGGAGGAGGGGATGAGGAGGGTGATGTACCTCAGCTGCTGCTGGGGCCCTAGCTAAGATTGTCATTTAGATTGATACTATCCTGCTTCTTTTGCTGCTTGATTTCGTAGGTAGTTTTGAACTTTTGATTACTTGGGAATCTGAAGCTGGCTTTGCAAGCATCAAGATGCTGATT
More
|
||||||||||
| CDS seq | ATGGCGAGCGCGGCGGCGGCGGTGGCGGCGAAGGCGTGGTGGACGGCGGCGATGAGCGTGGGCGCGGTGGAGGGGCTCAAGGACCAGTCGGGCCTCTGCCGCTGGAACTACGCGCTCCGGTCGCTGCACGGCGCCGCCATGGACACCCTGATGCTGCAGGTGCATGGCGGCGCCGGCGCCTCCTCGCCGGCGGCGGCGATGGCGGCGGAGAGGCCGGAGGAGGAGGGGATGAGGAGGGTGATGTACCTCAGCTGCTGCTGGGGCCCTAGCTAA |
||||||||||
| Protein seq | MASAAAAVAAKAWWTAAMSVGAVEGLKDQSGLCRWNYALRSLHGAAMDTLMLQVHGGAGASSPAAAMAAERPEEEGMRRVMYLSCCWGPS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0178500 | OsNip_08t0178500-01 | Chr08 | 4593671 | 4594173 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGAGCGCGGCGGCGGCGGTGGCGGCGAAGGCGTGGTGGACGGCGGCGATGAGCGTGGGCGCGGTGGAGGGGCTCAAGGACCAGTCGGGCCTCTGCCGCTGGAACTACGCGCTCCGGTCGCTGCACGGCGCCGCCATGGACACCCTGATGCTGCAGGTGCATGGCGGCGCCGGCGCCTCCTCGCCGGCGGCGGCGATGGCGGCGGAGAGGCCGGAGGAGGAGGGGATGAGGAGGGTGATGTACCTCAGCTGCTGCTGGGGCCCTAGCTAA
More
|
|||||||
| Protein seq | MASAAAAVAAKAWWTAAMSVGAVEGLKDQSGLCRWNYALRSLHGAAMDTLMLQVHGGAGASSPAAAMAAERPEEEGMRRVMYLSCCWGPS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0635100 | SBH | 0.0 | 0.0 | 6.954032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g08090 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0178500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005340 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005360 | RBH | 0.0 | 1.839308 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005400 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005080 | RBH | 0.0 | 5.774411 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0068300 | RBH | 0.128991 | 0 | 0.100532 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004920 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0074300 | RBH | 0.291094 | 0.0149855 | 0.1519315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005040 | RBH | 0.0 | 0.422640 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004900 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005030 | RBH | 0.0 | 2.157813 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005000 | RBH | 0.0 | 0.0 | 0.0 |
