Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0170800 | OGI:08010570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:4147266-4149998 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCTCAGAAATAATTCTATGATATTCAACTATCCACAACCAGAAAAAAAAATGTGGTCCTTACATACTGACCTTGAACAACTTTCTAGCAAATTATCATTGACATCATCAGAGATTTCCTCACTTCATTTCAATATACAGGTGATATTTTTGTTGTCTGTTCAATATCACGATGTGTTAAACGATCTGCAAAGTAAACAGCATGAGCACACACACGTCTGGAAGGTTGACATGTTCAGCTCATTCATGCTTGCTGCCATTTCCATCAGAAACTAGTGGTATAGAATCCTTGTGTTGTAAACTTGTATTTTTGGAGTGAACGATATCCAATACATTCTGTCTAGAGTTTCACAGGCATATACTCCGAAGTTGCCAAGTATGTGATGATTCATTCTTACAACCAGCAACATGATTGTGAAAGTCATCAAGATAGATAACCAACCTATAAAAAATAATGAAGTACAAAATGTAAGGATACTGAAGTAAATGACGAAAAGCATGCGAAAACTAGGCATAAGCTGTTCAAAATGATTCCTTGTAAATACTGTTTTTTAAATGCTACTCCCAGAATGACTTACATTGTGAAACAGAGGAAGTACTAGTATTTTTTTCAGAATTTTTTTAAATCAAACAAGTCTAAATTTCAGAAGAGTGTAGCTAATGGTCCAGGCTATCAAATTCACATCCTAGAAACAGAGTTGGTCAGTTGGATGATACGGTGCACAAAAACACACTATCCAGGCATGTAAAATAAGGTAAAAGAAAAGAGTAAAGTAACGTCTTGGTAAGATGAGAGAGAGTTCTTTAAGATTAAATCATGAGGAATTTTACAGTAGTTGAGAAATTACCTTGAGGTACCTAAATTTTATTCTAAAATTTTTGGTACCTTGAGGTACTTAGTACCTAGAGGTACCAAATTTTACACTAGAAAATATGGTACCTCTATGTACCTTCTTAGAGATAGTAAAATTACCCTTAAATCATGCATGTAGGTTGGAAATAAGAGCAAGAGAGACAAGCTAAGGTAGCAGTAAAGTAATTACATATGCAACAAAATTGTACAAGCACATGGGGGGTGTTCACCTGTTGCTGGGGGTTGGGTAGCACCATCTTATCTTCACCATATCTCACCAGTTCAAGAGTGGGACAATTGGGATGGACATCGACTGCATATCTTGCAGCCGCCTCTGCTTCCTCAACCTCCTCAAGACTAGCATTCTCGCAGTTTATGGAGACACAGAATTTCTCGACGCGTGGATTCATCAACAGCCATCGGAAGTCCAAATGGTCTCCGTCGTTCTTTCGCAGATTGACATCACATCTATCAACTTTAGGATTGGTGCTGCTTGGCTAAGAACAAGGAATTAAGATGAAATGGACAGGTAAGCCAAGCCATGAAAAAAAAAAAAAAGAAACAAGTAACTAAGCTAGAAGTATGCATGGACACTGCAGCCATCCACTACCTTGTGTGGATTTTGTACAAGTTTATCACATCTATATTCTACAACATGCATGCTAGAGTTGATGCATCATGCTAATTATCTCAGTAAATAGCAACATCAAATGAAAAACAGAGCATCTTTTTGTTGTATGATCAGAGCATACCTCTTGGTCAGGTAAGAGCATGATATATTTTCCAAATGGCCGTGTGGTTTGGAAGATGGGATGATTAGGATGGACGATGGCTGCATGCTCCAACATGGCCTCCGCTTCTTCCACCTCTGTATCATGGGCATCCCAAGAGTTGATTTCAACGGTGACTCGCTGAAGCGAGCTAGGGAGGTTCACCAAGCCAAGTTTTTTGAAACAAAGCAGGTCCGCGTCTTTGAGGAACCGCACATGGACACTAAATGCAAGGGATTCAAGGCTTGGCATGATAGCGCATTCACTGCCTTGCACATCAAACAAGATGGATGAACTGCCCATCGTGAAGAATCTCAACTTCTTGAAGTAGCAATCACTGCCAGTATTCTTAATTCTTACCACTTTGGTGTAACGCGAATCCAGTACAAGGCAACGCAGCTCGGGCAGCCTCCCAAGAGTTTCCATGTCCTGCTCTTGCATAACCTGCACTTTCATGTCTAGATGGGAGAGGTTCGGAAGAAGCGAGGAGTTAACCGACGCTGGCAGTCTAGAGAGCTCGAAGCATTCCAAATTCAGGTGCCGGAGGCGCCAACGAGAGGCAAATCCTGCATCCCATGTGACTCCCCTCTCTAGTGGTGATCCAAAAATATCCACACTCTGAATTTTCTGAAGATTGCCAAGCAGGGACTCCATCAAATCTCTCTCCGTGCTCTCATCAACTGCATAAATACTAGCACGGAGCACCCTCAGTTCCCTCAGGTTACCCAGCTCCTTCGCAAAACGGCGTGTCGAAGCGGCACCAGCCACTGGGTCCATGTCGCGGTAGTATGCGGAACCAGGCCATGTCCACAGCTCTTGCAAAGACGTCAGCTTGCCGATCAAACCGGCTGGCACTGTCGTACTCCGATCAGTGTGTAAGCACAACAGTTGTGTCAACAGGCCCACTGCCTGTGGCAGCTCCTTTATGCCAGTATTCCATAAATCCAAAGTCTGGAGAAACTTGAGACCTCCTACTTCCTTTGGGAGCTTGCTAATGTCAGTATCTGGTAACCCAAGGTACCTCAAGTGAAGTAAACTGCCAAGATGATCCACACTATTTCCACCACAACCTTCCACATCTTCCACATCATCACAATCTTCTAGAATTAAT
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| CDS seq | TTAATTCTAGAAGATTGTGATGATGTGGAAGATGTGGAAGGTTGTGGTGGAAATAGTGTGGATCATCTTGGCAGTTTACTTCACTTGAGGTACCTTGGGTTACCAGATACTGACATTAGCAAGCTCCCAAAGGAAGTAGGAGGTCTCAAGTTTCTCCAGACTTTGGATTTATGGAATACTGGCATAAAGGAGCTGCCACAGGCAGTGGGCCTGTTGACACAACTGTTGTGCTTACACACTGATCGGAGTACGACAGTGCCAGCCGGTTTGATCGGCAAGCTGACGTCTTTGCAAGAGCTGTGGACATGGCCTGGTTCCGCATACTACCGCGACATGGACCCAGTGGCTGGTGCCGCTTCGACACGCCGTTTTGCGAAGGAGCTGGGTAACCTGAGGGAACTGAGGGTGCTCCGTGCTAGTATTTATGCAGTTGATGAGAGCACGGAGAGAGATTTGATGGAGTCCCTGCTTGGCAATCTTCAGAAAATTCAGAGTGTGGATATTTTTGGATCACCACTAGAGAGGGGAGTCACATGGGATGCAGGATTTGCCTCTCGTTGGCGCCTCCGGCACCTGAATTTGGAATGCTTCGAGCTCTCTAGACTGCCAGCGTCGGTTAACTCCTCGCTTCTTCCGAACCTCTCCCATCTAGACATGAAAGTGCAGGTTATGCAAGAGCAGGACATGGAAACTCTTGGGAGGCTGCCCGAGCTGCGTTGCCTTGTACTGGATTCGCGTTACACCAAAGTGGTAAGAATTAAGAATACTGGCAGTGATTGCTACTTCAAGAAGTTGAGATTCTTCACGATGGGCAGTTCATCCATCTTGTTTGATGTGCAAGGCAGTGAATGCGCTATCATGCCAAGCCTTGAATCCCTTGCATTTAGTGTCCATGTGCGGTTCCTCAAAGACGCGGACCTGCTTTGTTTCAAAAAACTTGGCTTGGTGAACCTCCCTAGCTCGCTTCAGCGAGTCACCGTTGAAATCAACTCTTGGGATGCCCATGATACAGAGGTGGAAGAAGCGGAGGCCATGTTGGAGCATGCAGCCATCGTCCATCCTAATCATCCCATCTTCCAAACCACACGGCCATTTGGAAAATATATCATGCTCTTACCTGACCAAGAGCCAAGCAGCACCAATCCTAAAGTTGATAGATGTGATGTCAATCTGCGAAAGAACGACGGAGACCATTTGGACTTCCGATGGCTGTTGATGAATCCACGCGTCGAGAAATTCTGTGTCTCCATAAACTGCGAGAATGCTAGTCTTGAGGAGGTTGAGGAAGCAGAGGCGGCTGCAAGATATGCAGTCGATGTCCATCCCAATTGTCCCACTCTTGAACTGGTGAGATATGGTGAAGATAAGATGGTGCTACCCAACCCCCAGCAACAGGTTGGTTATCTATCTTGA
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| Protein seq | LILEDCDDVEDVEGCGGNSVDHLGSLLHLRYLGLPDTDISKLPKEVGGLKFLQTLDLWNTGIKELPQAVGLLTQLLCLHTDRSTTVPAGLIGKLTSLQELWTWPGSAYYRDMDPVAGAASTRRFAKELGNLRELRVLRASIYAVDESTERDLMESLLGNLQKIQSVDIFGSPLERGVTWDAGFASRWRLRHLNLECFELSRLPASVNSSLLPNLSHLDMKVQVMQEQDMETLGRLPELRCLVLDSRYTKVVRIKNTGSDCYFKKLRFFTMGSSSILFDVQGSECAIMPSLESLAFSVHVRFLKDADLLCFKKLGLVNLPSSLQRVTVEINSWDAHDTEVEEAEAMLEHAAIVHPNHPIFQTTRPFGKYIMLLPDQEPSSTNPKVDRCDVNLRKNDGDHLDFRWLLMNPRVEKFCVSINCENASLEEVEEAEAAARYAVDVHPNCPTLELVRYGEDKMVLPNPQQQVGYLS |
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| Function | Disease resistance protein Pik-1 [UniProtKB/Swiss-Prot:F2VYU4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0170800 | OsNip_08t0170800-01 | Chr08 | 4147266 | 4149998 | - | RAP2018-11-26 | ||
| CDS seq | TTAATTCTAGAAGATTGTGATGATGTGGAAGATGTGGAAGGTTGTGGTGGAAATAGTGTGGATCATCTTGGCAGTTTACTTCACTTGAGGTACCTTGGGTTACCAGATACTGACATTAGCAAGCTCCCAAAGGAAGTAGGAGGTCTCAAGTTTCTCCAGACTTTGGATTTATGGAATACTGGCATAAAGGAGCTGCCACAGGCAGTGGGCCTGTTGACACAACTGTTGTGCTTACACACTGATCGGAGTACGACAGTGCCAGCCGGTTTGATCGGCAAGCTGACGTCTTTGCAAGAGCTGTGGACATGGCCTGGTTCCGCATACTACCGCGACATGGACCCAGTGGCTGGTGCCGCTTCGACACGCCGTTTTGCGAAGGAGCTGGGTAACCTGAGGGAACTGAGGGTGCTCCGTGCTAGTATTTATGCAGTTGATGAGAGCACGGAGAGAGATTTGATGGAGTCCCTGCTTGGCAATCTTCAGAAAATTCAGAGTGTGGATATTTTTGGATCACCACTAGAGAGGGGAGTCACATGGGATGCAGGATTTGCCTCTCGTTGGCGCCTCCGGCACCTGAATTTGGAATGCTTCGAGCTCTCTAGACTGCCAGCGTCGGTTAACTCCTCGCTTCTTCCGAACCTCTCCCATCTAGACATGAAAGTGCAGGTTATGCAAGAGCAGGACATGGAAACTCTTGGGAGGCTGCCCGAGCTGCGTTGCCTTGTACTGGATTCGCGTTACACCAAAGTGGTAAGAATTAAGAATACTGGCAGTGATTGCTACTTCAAGAAGTTGAGATTCTTCACGATGGGCAGTTCATCCATCTTGTTTGATGTGCAAGGCAGTGAATGCGCTATCATGCCAAGCCTTGAATCCCTTGCATTTAGTGTCCATGTGCGGTTCCTCAAAGACGCGGACCTGCTTTGTTTCAAAAAACTTGGCTTGGTGAACCTCCCTAGCTCGCTTCAGCGAGTCACCGTTGAAATCAACTCTTGGGATGCCCATGATACAGAGGTGGAAGAAGCGGAGGCCATGTTGGAGCATGCAGCCATCGTCCATCCTAATCATCCCATCTTCCAAACCACACGGCCATTTGGAAAATATATCATGCTCTTACCTGACCAAGAGCCAAGCAGCACCAATCCTAAAGTTGATAGATGTGATGTCAATCTGCGAAAGAACGACGGAGACCATTTGGACTTCCGATGGCTGTTGATGAATCCACGCGTCGAGAAATTCTGTGTCTCCATAAACTGCGAGAATGCTAGTCTTGAGGAGGTTGAGGAAGCAGAGGCGGCTGCAAGATATGCAGTCGATGTCCATCCCAATTGTCCCACTCTTGAACTGGTGAGATATGGTGAAGATAAGATGGTGCTACCCAACCCCCAGCAACAGGTTGGTTATCTATCTTGA
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| Protein seq | LILEDCDDVEDVEGCGGNSVDHLGSLLHLRYLGLPDTDISKLPKEVGGLKFLQTLDLWNTGIKELPQAVGLLTQLLCLHTDRSTTVPAGLIGKLTSLQELWTWPGSAYYRDMDPVAGAASTRRFAKELGNLRELRVLRASIYAVDESTERDLMESLLGNLQKIQSVDIFGSPLERGVTWDAGFASRWRLRHLNLECFELSRLPASVNSSLLPNLSHLDMKVQVMQEQDMETLGRLPELRCLVLDSRYTKVVRIKNTGSDCYFKKLRFFTMGSSSILFDVQGSECAIMPSLESLAFSVHVRFLKDADLLCFKKLGLVNLPSSLQRVTVEINSWDAHDTEVEEAEAMLEHAAIVHPNHPIFQTTRPFGKYIMLLPDQEPSSTNPKVDRCDVNLRKNDGDHLDFRWLLMNPRVEKFCVSINCENASLEEVEEAEAAARYAVDVHPNCPTLELVRYGEDKMVLPNPQQQVGYLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.265807 | 0.406838 | 2.028588 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g07390 | RBH | 0.160684 | 0.244605 | 0.466802 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0170800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0004770 | SBH | 0.998658 | 0.430401 | 0.642041 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0004860 | RBH | 0.330677 | 9.358120 | 1.459795 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004810 | RBH | 0.506453 | 1.577588 | 5.474248 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0004860 | RBH | 0.093978 | 0.220915 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0004590 | SBH | 2.174781 | 4.601822 | 3.999743 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0061900 | SBH | 0.6057375 | 16.6181255 | 19.854616 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003030 | SBH | 0.015827 | 0.042652 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0067500 | SBH | 2.8703735 | 9.310707 | 2.6230105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004530 | RBH | 0.504364 | 0.406550 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0004570 | RBH | 0.458382 | 6.235252 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0004410 | RBH | 2.201033 | 10.113585 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004690 | SBH | 0.744127 | 4.136412 | 0.704250 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0004510 | SBH | 0.036007 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004510 | RBH | 0.387245 | 1.254178 | 1.768555 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004460 | RBH | 0.527636 | 7.914545 | 4.497088 |
