Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0166500 | OGI:08012110 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:3864077-3865941 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAGCTGTCAGGATCAGAATGGGGGAGCATTGCAAAGCGTCTCCCTGAGCCTGAGCTTTCAGCCCCTGGTGGTTCCAGGCCCAGGCAGACGTGTCCCAACAGTTGGTTCTTCTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCACGGTCTCCTTGGCTGAGATAGAGATTGCAAGCGTGCTGTGTGTTGTGTGTTGTCGCTGGCATGGAGCTTGTGGCCGAACGGATAGACCACTATGTTGGCCTGTCATTGGTCACCCAAGGGCAAGGGGCAGCATGCCTTCTGCCTTTACCAACTCTCAGGTTCCCTGCTCTCTCTCTCTCTCTGCTTTGCTTTGCTGAGTTCATATGCACAATGCAATCATGCATATACTCCCAATTAAACAGTAATGCTAATGCAATGTCAAACCTTTCTTTTCATCATCCAATTAATTATGAATTATCTTTGCACTGTTTGTTTATTTGTAGCTAGATGCTGCATCCCCTTTCTTTGGGCAGACTCAATGTGGACCAGTTGGTTTCTTCTCCTTTTCTTATTTATAACAGAAGTGAACCACTTCATTTTAAGTCCATCCATGACAATAGTTTTGGATAACAGTTGCAGCATTTTGGCTCAATGCGTGGTTTCACATCGTGCAATTCGATCGATTAAAAATGCACACAATATGCTGGCAAAGAAAGAGACAGAAAGATAGGGCGTGTTTGTGTTATTTTTCTCAAGAACGATAGGAACTGTTTGCTGGAAAATGTTTTGTTAACAATCAGGGAAGGCAGGGCATGTCGAAGATTTCAATTAAGTTGAAGTTATCCTTTTAAATATTGTGCAACTAACTACGCACTTTTGGATAGTGCAGTTCTAGTTACTCCATCTGATTCCAAAGATAGGTCGTTTTTTGGAAAAAAAAAGACAGGTCGTTTTAGCTTAAATGATTTTGTGCCCTTCAATTGTACTAGTACCATATTAAAGGGGATGGAGCATTTATTTCTGAGAGAGATAACATTTAAGAATAATAAAAAAATATGCATAGAAGTTCTAAATTAATTTTTATTTGGGAAGAACTAGCCTTAGTCTCATCGGTTGCCTATATTCCCTAAAGCCAAAAAAACTTATTAGGAAATAAAAATTAACTTATTTTTTTTATGAAGGAAGCAAATAGGTAAAACTTATTAGGAAAAATTAACTTATAGGTAAAACTTTTATATATTTGTTTGTAACAACTTAAAAGATAACGCTAAAAAGAAATTACGTTAAAAATATCTTAAAATCGTTCGGAAATTTAAATTTTGGTTTTTGTTTTGGCTTATTAGGCTAACCGATAGTGCTCTAAAACTACTTGAATTTGGAATCGGAGAGAGTGCAATGGCATACTTTGTACCTCAGGATGGTGGTGAAGAGTTTTCAGTTCAGTCGTAACACGCAATGTGCGAAAAAGCGAGATGACACCCTCTAAGTGTCAAGTGATATCCTCAATCTCTTTTGGAAACTCAAATGATATCTTCACTTTCATTTAACAATTCCATGGTACAAGAAAGGATGAGCAGATGTGCATGCTCACTCAAGTAAAGTTGCTGGAGATGAAGAAGATGAAGAAAGAGAGATCAGATCAGCTTTGGGAGTTTGATGCAACTAGCCTAGTTGGTATTGGGCCTGCCTCTTAAAACTAATCCAAGAACTAACTCCTCAACTCGCCCACGCTGCAAAATGATTCCGTCACCAAATAAAACTATATATGCGTAATGCATGCTGATCAAAGTGCCATTTGCTTTTCTTTTGTCAGGGAAGAGATTTTGTAAAATATGCAGTGATTGATTTGCCAAATCAAGACCAGATGTCCATGC
More
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| CDS seq | CAGCTGTCAGGATCAGAATGGGGGAGCATTGCAAAGCGTCTCCCTGAGCCTGAGCTTTCAGCCCCTGGTGGTTCCAGGCCCAGGCAGACGTGTCCCAACAGTTGGTTCTTCTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCACGGTCTCCTTGGCTGA |
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| Protein seq | QLSGSEWGSIAKRLPEPELSAPGGSRPRQTCPNSWFFFLVHVSIGLLNPTKSAAPAHGLLG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0166500 | OsNip_08t0166500-01 | Chr08 | 3864077 | 3865941 | + | RAP2018-11-26 | ||
| CDS seq | CAGCTGTCAGGATCAGAATGGGGGAGCATTGCAAAGCGTCTCCCTGAGCCTGAGCTTTCAGCCCCTGGTGGTTCCAGGCCCAGGCAGACGTGTCCCAACAGTTGGTTCTTCTTCCTTGTACATGTCTCCATCGGCTTGCTCAACCCCACCAAATCCGCCGCGCCGGCCCACGGTCTCCTTGGCTGA |
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| Protein seq | QLSGSEWGSIAKRLPEPELSAPGGSRPRQTCPNSWFFFLVHVSIGLLNPTKSAAPAHGLLG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.425864 | 0.160545 | 0.746704 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0166500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0004550 | RBH | 0.663637 | 1.091617 | 2.922784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0004400 | RBH | 0.196484 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004210 | RBH | 0.111948 | 2.067501 | 1.261862 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
