Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0154225 | OGI:08008130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:3115509-3117296 | ||||||||
| Gene Symbol | OsRH45 | ||||||||||
| DNA seq | CTACTTCACATCTAATTCACAACCAGCAATCAGCAAGTTGCATACGTTGCTCTTGAAATCAGCAAGAGTTGATTCACGGTCAGTCTGATCTTTCCCACCATGTAAAGATAAGCATGGATATCCACGCTGAAACAAGTCTTTAAGTAGAGAATCACATTTATCTTGTGAGTGGACAAAAACAAGAATTTTGCCTCTATCAAACCACTCTCCAAGCAACTCCAACAGCCTCAAGAACCTCTCATTTTCTGGCCGCACCTCAACCAGTTGTGTGATATCTTTGTTGACGACACTCCTCCCACCCACCTGGATCTCAACAGGCTTTGTCAGCACCTTACGTGCCAGTATCTCCACCTGCCGTGGAAAAATGGCTGAGAAAAGAACAGTCTGCCTATCTGGGCGGGTATTCTGAACTATCCGAGTAATCTGAGGCTCAAAGCCCATATCAAACATCCTATCAGCTTCATCCATCACCAAGAATGTAACTCTCCGAAGGTTAGTAATCTTTCCACTGCTGGTGCAAAGGATATCGATCATCCTGCCCGGTGTACAAACAACAATTTCAGCGCCCCTCTTTAGTTCACTGATCTGCTGGGCAACACCTGAACCTCCATAGATAGCTACACAGTTGATGCCAAGCGACTTCGCGAACTTCTTAATGTCTGAATGTATCTGCACCACGAGCTCTCTGGTAGGAGCCATAATGAGCCCAATAGGGCCATCTCCAGGCACAACAGGCGGCTGGTCTTTGACATGCCTGAGCATTGGCAGGACAAACGCTAGAGTCTTGCCCGATCCAGTCTTTGCAATTCCTATACAATCACGCCCACTCATTATGATTGGTAATGCCTGTGCCTGTATAGGCATCGGCTTCTCAAAACCAAGCTTCTTGATGGTGTCAAGGAGCTTGCTGGTCAGCCCACTCTGCACCCATGTTTTTATTGGCTTGGGCACATCTTTCCCATGTACCTTGAGCTCCAGATTTTTCCTGTAGGTAGCCACTTCCTCTCCTGTCATCATTGTGATATCCTTCACCTCAATGTACAAATTCTTCCGGAATGGCTGGTACTCAATTTTGGAATGGTCAACAATAGCCAGCTTTTCTACCTTCGTCTTCTTGACACGTTTCATGAACTCCTCATCATCCTCATCTTTCGATCCACCCTCATCGTCGTCGTCGTCATCATAATCAGAGTCCGAATCATCCCCTTGCATAATTCTCCCCATTGCCTTCTTTTGCCCTTTCTTATCACCATTACTCACAGCATCCTTTGCACTTTTACCATTCTTATCACCCATGTTGGAAGCAGGCATGCTCTCCATTGATGCCACAGCCGTCTCCAGCTTTGCGACCTCCGGCAACACCATGGAGCTCATGAATGCATCGAGCGGATCAATCTCATCCTCCTCCATAGGAGCAGCAACATTTGCATCATTCACCTCACTCGGCAAATCGGCAGTGATGCCACCGTCATCTTCTGCATTTTGGCTATCCTCCTTGTATCCCTCCTCATCAGACTCCTCACCATCCAGAGTCCACTTCTTCCCGGCATTGGAATCGCCGTCGGCCCCAGCGGCCGCGGCAGGAGTGCCAGCACCGGCCGCCGCCTCCTGCTCGCGGCGCTTCGCCTCCTCCTCCTCCAACCGCTTCTGCTCCTGCCACTCCTTGACACGGCGGCGGCGGAGCTCCATCTCCTCGTCGAGCCGCTTCTTCTCCTCCTCAATCATCTTCTGACGCCGCCTCTCGGACTCCTCCTCATCCACCACCACCACCACCTCCTCCTCCTCCAT
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| CDS seq | ATGGAGGAGGAGGAGGTGGTGGTGGTGGTGGATGAGGAGGAGTCCGAGAGGCGGCGTCAGAAGATGATTGAGGAGGAGAAGAAGCGGCTCGACGAGGAGATGGAGCTCCGCCGCCGCCGTGTCAAGGAGTGGCAGGAGCAGAAGCGGTTGGAGGAGGAGGAGGCGAAGCGCCGCGAGCAGGAGGCGGCGGCCGGTGCTGGCACTCCTGCCGCGGCCGCTGGGGCCGACGGCGATTCCAATGCCGGGAAGAAGTGGACTCTGGATGGTGAGGAGTCTGATGAGGAGGGATACAAGGAGGATAGCCAAAATGCAGAAGATGACGGTGGCATCACTGCCGATTTGCCGAGTGAGGTGAATGATGCAAATGTTGCTGCTCCTATGGAGGAGGATGAGATTGATCCGCTCGATGCATTCATGAGCTCCATGGTGTTGCCGGAGGTCGCAAAGCTGGAGACGGCTGTGGCATCAATGGAGAGCATGCCTGCTTCCAACATGGGTGATAAGAATGGTAAAAGTGCAAAGGATGCTGTGAGTAATGGTGATAAGAAAGGGCAAAAGAAGGCAATGGGGAGAATTATGCAAGGGGATGATTCGGACTCTGATTATGATGACGACGACGACGATGAGGGTGGATCGAAAGATGAGGATGATGAGGAGTTCATGAAACGTGTCAAGAAGACGAAGGTAGAAAAGCTGGCTATTGTTGACCATTCCAAAATTGAGTACCAGCCATTCCGGAAGAATTTGTACATTGAGGTGAAGGATATCACAATGATGACAGGAGAGGAAGTGGCTACCTACAGGAAAAATCTGGAGCTCAAGGTACATGGGAAAGATGTGCCCAAGCCAATAAAAACATGGGTGCAGAGTGGGCTGACCAGCAAGCTCCTTGACACCATCAAGAAGCTTGGTTTTGAGAAGCCGATGCCTATACAGGCACAGGCATTACCAATCATAATGAGTGGGCGTGATTGTATAGGAATTGCAAAGACTGGATCGGGCAAGACTCTAGCGTTTGTCCTGCCAATGCTCAGGCATGTCAAAGACCAGCCGCCTGTTGTGCCTGGAGATGGCCCTATTGGGCTCATTATGGCTCCTACCAGAGAGCTCGTGGTGCAGATACATTCAGACATTAAGAAGTTCGCGAAGTCGCTTGGCATCAACTGTGTAGCTATCTATGGAGGTTCAGGTGTTGCCCAGCAGATCAGTGAACTAAAGAGGGGCGCTGAAATTGTTGTTTGTACACCGGGCAGGATGATCGATATCCTTTGCACCAGCAGTGGAAAGATTACTAACCTTCGGAGAGTTACATTCTTGGTGATGGATGAAGCTGATAGGATGTTTGATATGGGCTTTGAGCCTCAGATTACTCGGATAGTTCAGAATACCCGCCCAGATAGGCAGACTGTTCTTTTCTCAGCCATTTTTCCACGGCAGGTGGAGATACTGGCACGTAAGGTGCTGACAAAGCCTGTTGAGATCCAGGTGGGTGGGAGGAGTGTCGTCAACAAAGATATCACACAACTGGTTGAGGTGCGGCCAGAAAATGAGAGGTTCTTGAGGCTGTTGGAGTTGCTTGGAGAGTGGTTTGATAGAGGCAAAATTCTTGTTTTTGTCCACTCACAAGATAAATGTGATTCTCTACTTAAAGACTTGTTTCAGCGTGGATATCCATGCTTATCTTTACATGGTGGGAAAGATCAGACTGACCGTGAATCAACTCTTGCTGATTTCAAGAGCAACGTATGCAACTTGCTGATTGCTGGTTGTGAATTAGATGTGAAGTAG
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| Protein seq | MEEEEVVVVVDEEESERRRQKMIEEEKKRLDEEMELRRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEEGYKEDSQNAEDDGGITADLPSEVNDANVAAPMEEDEIDPLDAFMSSMVLPEVAKLETAVASMESMPASNMGDKNGKSAKDAVSNGDKKGQKKAMGRIMQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTKVEKLAIVDHSKIEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWFDRGKILVFVHSQDKCDSLLKDLFQRGYPCLSLHGGKDQTDRESTLADFKSNVCNLLIAGCELDVK |
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| Function | DEAD-box ATP-dependent RNA helicase 45 [UniProtKB/Swiss-Prot:Q0J7Y8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0154225 | OsNip_08t0154225-00 | Chr08 | 3115509 | 3117296 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGAGGAGGAGGTGGTGGTGGTGGTGGATGAGGAGGAGTCCGAGAGGCGGCGTCAGAAGATGATTGAGGAGGAGAAGAAGCGGCTCGACGAGGAGATGGAGCTCCGCCGCCGCCGTGTCAAGGAGTGGCAGGAGCAGAAGCGGTTGGAGGAGGAGGAGGCGAAGCGCCGCGAGCAGGAGGCGGCGGCCGGTGCTGGCACTCCTGCCGCGGCCGCTGGGGCCGACGGCGATTCCAATGCCGGGAAGAAGTGGACTCTGGATGGTGAGGAGTCTGATGAGGAGGGATACAAGGAGGATAGCCAAAATGCAGAAGATGACGGTGGCATCACTGCCGATTTGCCGAGTGAGGTGAATGATGCAAATGTTGCTGCTCCTATGGAGGAGGATGAGATTGATCCGCTCGATGCATTCATGAGCTCCATGGTGTTGCCGGAGGTCGCAAAGCTGGAGACGGCTGTGGCATCAATGGAGAGCATGCCTGCTTCCAACATGGGTGATAAGAATGGTAAAAGTGCAAAGGATGCTGTGAGTAATGGTGATAAGAAAGGGCAAAAGAAGGCAATGGGGAGAATTATGCAAGGGGATGATTCGGACTCTGATTATGATGACGACGACGACGATGAGGGTGGATCGAAAGATGAGGATGATGAGGAGTTCATGAAACGTGTCAAGAAGACGAAGGTAGAAAAGCTGGCTATTGTTGACCATTCCAAAATTGAGTACCAGCCATTCCGGAAGAATTTGTACATTGAGGTGAAGGATATCACAATGATGACAGGAGAGGAAGTGGCTACCTACAGGAAAAATCTGGAGCTCAAGGTACATGGGAAAGATGTGCCCAAGCCAATAAAAACATGGGTGCAGAGTGGGCTGACCAGCAAGCTCCTTGACACCATCAAGAAGCTTGGTTTTGAGAAGCCGATGCCTATACAGGCACAGGCATTACCAATCATAATGAGTGGGCGTGATTGTATAGGAATTGCAAAGACTGGATCGGGCAAGACTCTAGCGTTTGTCCTGCCAATGCTCAGGCATGTCAAAGACCAGCCGCCTGTTGTGCCTGGAGATGGCCCTATTGGGCTCATTATGGCTCCTACCAGAGAGCTCGTGGTGCAGATACATTCAGACATTAAGAAGTTCGCGAAGTCGCTTGGCATCAACTGTGTAGCTATCTATGGAGGTTCAGGTGTTGCCCAGCAGATCAGTGAACTAAAGAGGGGCGCTGAAATTGTTGTTTGTACACCGGGCAGGATGATCGATATCCTTTGCACCAGCAGTGGAAAGATTACTAACCTTCGGAGAGTTACATTCTTGGTGATGGATGAAGCTGATAGGATGTTTGATATGGGCTTTGAGCCTCAGATTACTCGGATAGTTCAGAATACCCGCCCAGATAGGCAGACTGTTCTTTTCTCAGCCATTTTTCCACGGCAGGTGGAGATACTGGCACGTAAGGTGCTGACAAAGCCTGTTGAGATCCAGGTGGGTGGGAGGAGTGTCGTCAACAAAGATATCACACAACTGGTTGAGGTGCGGCCAGAAAATGAGAGGTTCTTGAGGCTGTTGGAGTTGCTTGGAGAGTGGTTTGATAGAGGCAAAATTCTTGTTTTTGTCCACTCACAAGATAAATGTGATTCTCTACTTAAAGACTTGTTTCAGCGTGGATATCCATGCTTATCTTTACATGGTGGGAAAGATCAGACTGACCGTGAATCAACTCTTGCTGATTTCAAGAGCAACGTATGCAACTTGCTGATTGCTGGTTGTGAATTAGATGTGAAGTAG
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| Protein seq | MEEEEVVVVVDEEESERRRQKMIEEEKKRLDEEMELRRRRVKEWQEQKRLEEEEAKRREQEAAAGAGTPAAAAGADGDSNAGKKWTLDGEESDEEGYKEDSQNAEDDGGITADLPSEVNDANVAAPMEEDEIDPLDAFMSSMVLPEVAKLETAVASMESMPASNMGDKNGKSAKDAVSNGDKKGQKKAMGRIMQGDDSDSDYDDDDDDEGGSKDEDDEEFMKRVKKTKVEKLAIVDHSKIEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWFDRGKILVFVHSQDKCDSLLKDLFQRGYPCLSLHGGKDQTDRESTLADFKSNVCNLLIAGCELDVK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.083193 | 0.202628 | 0.666363 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0159900 | SBH | 4.799808 | 8.299121 | 8.987772 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05810 | SBH | 0.113092 | 0.207728 | 0.107842 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0154225 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003620 | SBH | 0.0 | 0.0 | 1.698928 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003670 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003650 | RBH | 0.0 | 0.0 | 0.618969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003450 | RBH | 2.785907 | 0.0 | 3.135769 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0047700 | RBH | 0.3526685 | 0.521085 | 0.7106265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003320 | RBH | 0.000000 | 0.0 | 0.360096 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0052900 | SBH | 0.3420595 | 0.264658 | 2.7184175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003350 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0003190 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003460 | RBH | 0.112068 | 0.0 | 0.217795 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003400 | RBH | 0.060602 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003340 | RBH | 0.0 | 0.0 | 0.464655 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0003250 | RBH | 0.0 | 0.0 | 0.371293 |
