Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g014826A | OGI:08006820 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:2758766-2760587 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGGTTGAAATCCCTAATTTCTATCCCCTCTCTGAAATTAACATGGTATCAGAGCAAGAGATCCTAAAACCCTAGCCACCAAATCCGGTCATCGCAGGCGCGCCGGCGGCGCTCGCCGCCGGCGAGCCATCGTCTCATCCTCCCGTCATTAGTTGGCTGTCTTCGAGTTGTAGCAGTTTTGCTTTTTGTCTCTTCTCTTCGCATCAAAGCAGCAGCAACAATCGCCTCCTCCTGCTGCCGCCGGCCTAGCCACCGGCTACCTCGTCCATCCGTCGTCCTCCGCGACCGATCCCGTTGCAGATCTCGCGGCCGGTGGCGGTCGTCGTCGTCGTCGTCGTCCGTTGTCATATGTCGCATCAAGTCATCATGTTGTGGCTGCCGCTCGTTGCGTCCCCTTCCTCGTCGTCCCGTCCTCAAGCCTGTCAAGCAGCAGTCCGGAGCATCGTCCTTCCTCATCCCCACGCATCAGTGCGCGCTGCCAGAGGCAACCCCGTCCAAGCCGTTAGCCCTGTCGTCCCCGCCGCGGCTCGTCGTCAATCGCGAAGCCGTCCTCACCAGCTGTCGTGGTCGTCGTCCTCGCTCCAAGTCGCAGCGCTCGTCAACGGCATCTGTCACTGCCGCTCGTCGTGGCGTGCATCTCCTCACCATCTCCACATCTGGCCCCCCGCATCTGCCTGTTGTGACCCCTTGCCCGGCGCCGGTCCTCTCCGCCAATCAGGCCTCGTCACCCGTTTGTAGCAGAGCAAGCAGCTGCCGCTGCCGGCAGATCCTTCATTCTTGGCTGTTGCCTGTAAACTGCACAAGTCCATATGCTGCACACAAGGTGCTCGACAAAATGCTTCAAAGAGTTGCTCCCACAGTCATGCTTTTGCCTTTCCAAATTTGTGCTTTACTGAAAGTATTCGTGGTCTCTCATTACCATCTCCTGAAGAAGCTGTCCATCTTCATCAGCTACTGCTCTCTGCTACCAAATTGGATAGAATTAATCAGTTAATCTGCAATTCCTTGGCAGCCACAATTATGTCTTTTGCTAGCATATCAATGTCCTCTACAAATTGATTTCCTTTGTTTCCTATGATCCTATCTAGTTTATCCATGAAAGTCTTGCTGCATATCTATTAGTATCGGTGTCATTTACTAGTTGCCATTCAGTCCATCCAAGTCCATTGCATATTCTTCAATCCGTCGAAGCCATGCCAATTTATCTCCAGCTTCATATCAGCTCTCCGTCGGAGTTGGTCTATCACTTCACCAGCTCCACATTGGAGCTGGTCTGTCATATCACCAGCTCCCCATCGGAGTTGACATCATCATCAATCAATGAAGGACCGAAGAACAATTTGTGAAGGTCCTTCATCATCACCATCATCGTCGTCATCAGATCTATGAAGGTCCGAAGAACAGTTTGTGAAGGGCTTTCCATCATTGTCAACATCTCTAAATCAATGAAGAGCCGAAGAACGAGTTGTGAAGGCTTCAAGGTACCGAGGGCCGAAGAACAGTTTGTGAAGGCTCCGAGGTCCACTTCATTGAAGAGGAGATGGATCTTTTTCTTCTTCATCGTCATCATCCAAGAATTGGCACACTTTGACGACATCATCAAGACTTTGGAGATAGGCTAATATTTAGTTTGTGTCCTAGTGTTTAGTTTACCCTTCAAATGCAATGTTATTGCATACACATTGCATTTGAGTGGGGGTGTTAAGTGTAGTAGTATGTCAAGGGTATTAGAGTACTTTCCCCTCTCTTGTGTTCCCCTCTCTTGTGTACATATATGCCATTTAGGGCCAAAATCAATACAAGGTTGAAATCCCTAATTTCTA
More
|
||||||||||
| CDS seq | ATGCTTCAAAGAGTTGCTCCCACAGTCATGCTTTTGCCTTTCCAAATTTGTGCTTTACTGAAAGTATTCGTGGTCTCTCATTACCATCTCCTGAAGAAGCTGTCCATCTTCATCAGCTACTGCTCTCTGCTACCAAATTGGATAGAATTAATC |
||||||||||
| Protein seq | MLQRVAPTVMLLPFQICALLKVFVVSHYHLLKKLSIFISYCSLLPNWIELI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g014826A | OsNip_08t014826A-01 | Chr08 | 2758766 | 2759846 | + | IsoSeq | ||
| CDS seq | ATGCTTCAAAGAGTTGCTCCCACAGTCATGCTTTTGCCTTTCCAAATTTGTGCTTTACTGAAAGTATTCGTGGTCTCTCATTACCATCTCCTGAAGAAGCTGTCCATCTTCATCAGCTACTGCTCTCTGCTACCAAATTGGATAGAATTAATC |
|||||||
| Protein seq | MLQRVAPTVMLLPFQICALLKVFVVSHYHLLKKLSIFISYCSLLPNWIELI |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g014826A | OsNip_08t014826A-02 | Chr08 | 2758766 | 2759883 | + | IsoSeq | ||
| CDS seq | ATGCTTCAAAGAGTTGCTCCCACAGTCATGCTTTTGCCTTTCCAAATTTGTGCTTTACTGAAAGTATTCGTGGTCTCTCATTACCATCTCCTGAAGAAGCTGTCCATCTTCATCAGCTACTGCTCTCTGCTACCAAATTGGATAGAATTAATC |
|||||||
| Protein seq | MLQRVAPTVMLLPFQICALLKVFVVSHYHLLKKLSIFISYCSLLPNWIELI |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g014826A | OsNip_08t014826A-03 | Chr08 | 2758766 | 2760587 | + | IsoSeq | ||
| CDS seq | ATGCTTCAAAGAGTTGCTCCCACAGTCATGCTTTTGCCTTTCCAAATTTGTGCTTTACTGAAAGTATTCGTGGTCTCTCATTACCATCTCCTGAAGAAGCTGTCCATCTTCATCAGCTACTGCTCTCTGCTACCAAATTGGATAGAATTAATC |
|||||||
| Protein seq | MLQRVAPTVMLLPFQICALLKVFVVSHYHLLKKLSIFISYCSLLPNWIELI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.212052 | 0.206127 | 3.121886 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025831 | RBH | 0.897900 | 3.375280 | 4.348029 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003141 | RBH | 0.058710 | 0.032375 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002841 | RBH | 0.026023 | 0.129327 | 0.383308 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004251 | RBH | 0.066806 | 0.486002 | 0.292292 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004140 | SBH | 0.0 | 0.0 | 2.163012 |
