Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0148267 | OGI:08006800 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:2760717-2765216 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTAATTTATCAATAGTATATCTGGTATCTGATAGAAGGTCAATTTACAATACATTGACAACAACAGTCAAGTGCAAAGCAGCAAAACTTGCTTGGAACTTATCAACCAGCCAAGACCTCTTCAATTGTGACAAAACGCCCCTTCTCAATGGACAACTGCCCAGCCACGCCGATGGCAACAGATAATAGGCCATCAGTTAAATCGACCGATGGGCCGGATGCACCTTGAAGCCTGATGGCAGACAGGAAATTGAGGTGCTCCAGGTAGCTAGATCCATGATGAAGACCTTGATATCTGAAAAATTTACAGTTAGTGGAGATACATAAAACTTCTTACCTACCTAGACCAAAGTAACCTCTGAGCATTACTTCCCTTCTTGGAAGGGATTAATTTTCCTGGACTGTTAACTAATCCTGTAGTTGGATAAGCAGATATTGAATATTATAAAGGAGATCCTTTAAAAGAAAAATTTTTAATGTGATGTCCGTCCATGGATATTAAAACCGCTTTTAGTTTTGGGACACTTTTACAGTGGGTGTTTTCCAATCTGAAGGAAAATGTCAGTGTGTTTTATGGATAACCTGTTGCCCAACGACAACTGTTCAGAAGAACAAAATTTTGTTACAAAGTGGTAAAGCGGAACATACTTGATCCGTTCATCTTCAGCCATTATCGTTACAACTCCATCTCTACCTCCTGTTCTCTTTCCAACCCTAACAATGCTCTCTGGAACAAAAGCCTCGCCCTGTTTAAATTTCCATCATTATACATAATAAAATTCCGTACTCTGACAGTTAACTTAATATAGCATGTATAATAAAGATTAGCTATGCCAAATAAATTCTAAAAGGGACTCCTTTCTATTTCTTAGCTCCATTGCAACAATAAAAAGACTCAAACTTACCTAATGCCCTAATGGCATCTGAAGCAACTTGCCTAAAATCTTTGGCAACAAGCTCAGAACCAGATCATCATGAAATTTTACAGCTTCAACTACATCTTCTGACACCCCCTCCCCCTTATCTATATGGTCCCAGCATTTTATACTATGGTCGTGACATTTAGAAATTAGAATCCATATCTTTATCACTTCTTGCTCATAGTCAGCGTCAAAAAAAACTTCTTGCTCATAGACTTGAGCACAATAGACCAACCTTTTATTTTGGATCTATGGTGTAGAGATGCATGTGTTATTGCCGATGCTTAATCATTCAAATATAATTTACCAGTGAGCCAATGCTTTTGGAATAGATAACTTCTGTCTGAACAACATTCCCCAAGAGTGTGCAATATTCATCTAAAAAAGGTAAAAGATGTAATAACAGGACCCATATTTGATAGGTTACGACTACCACATCTGGTGTGGTGATGTGCCTCTAAGCTCTAGCAGCATGACAAGATATTTTATGCAATTTTGCAGCATAGTGTCATTTTTACTCTTAATTGCCCTTACTGTTGGGGAAGATCTAAATTACCCTAGAAACATCATCAGCTACATAACAAAAATTCACTAAAGTGGCATATCTGCGTATTACTACGCAACTGTACTACGAAGAAATCAAGATATGAAAAGCATCGTCTTAGTTGTACCTTCCCAATGTCACCAACTACAGAAATTTCCTGCTCATTCCTACTACCTTCAGCAAACATGCAGAGGTCAAGCATGCCACGAGAGCCATTATCAAATTCTACTATTACATATGCATTGTCTATAATATCTGGAACCTGCATTGAGAAAGAAGTTAAAATCAGGGACTGCTGTTTAAACTGAGACCACCATAACCCGATAAGCACAAAAAATGCGCTGCAGCTTATAAATATAGCCTTTATAAGCTTATAAATAATCACATGAGTGAAAATGCCATCCAGCTTATAAATCAGCGATCTTGTAGTCAATTAACCTGACCTTCCCATCATAAATTTCATCCTTGTGGTTGACATCAATGGCTCCAGAAGCCATCACACGAACAGGGTTTGCAGCTGCAAACAATCTCATCAAATCAAAAAAATGGCAGCACTTCTCAACAAGAGTTCCTCCACTGTTGCAATTGAACCTATTCCAATTGTTAACCTGCCAGGGTTGTAACAGTTACAGCCTTACAGGAAATTTGAAAAGAATAATTACAACTAGTATCATAGTCTTGGGTCCTTGTACCTTAACAAGGAAAGGAAACCGGTGTTCACGGATTGCCACCATTCTGACTTGCCCCAAGGTGCCACTTTTAACAGTATCTATAAGCTTAGCAACCGGAGGCATATACCTGTATTCTAATCCAACTTGCACAAGTATGTCTGATCTCTGTTTAGCCGCTTCTACAACCTGTATGGAAAGATGGACAGATTCTGAAATCCACATGAAAGAGGTTTGTACAGATCGAGAGAACTAAAATTTTCAGGTGTTCATCAGAGAACAACTGAACAGAGACACAAACAATCAAGATAGATCTATGTAGATTCAAGGTCAAATACATTGATATCTGTTTTTCCTCAACAACCTTGCTAGCATGTCTTCTCTTTAATTTCTCAGTAGATTAGCATGGCTCTCCTTTCTTTTCGCTTCTACTACAAATGCAATTAAATGTTCAACAAACTTCCCACATACAACGAGAACAGCAAAGCTTAAAAGTATTCATGAACGTAAAATTTTGCAGCACTGCAGGCATCAAAATCACATCACACAGCTCTGACCCTCCAAAATTTGAGCTCACCTTCTGACAGTCCTGTACTGTAGTACACAAGGGCTTCTCAACAAGGATGTGGTGTGGTTTGGCGTGACTGATGATGTCCATGAGTATCTGGTAGTGGGTCATGTTTGGTGATGACACGACAACAGCGTCGCAAAGCCCGCTGTCCAGCAGCTCCCCATGACCTGAAAAGATCTTGAAACCTTCTAGTCGTTTAGGATTCAGTACAACAACAGGCACAACTATAGAACACACAAATTGTGGCAATCTAATATCATCCATACTGTCAATAGTTTTGACAAAAAATCTGAATTGAACTAACACACATGGCACACTAAAGTCTAATTGTGATGAAATCAATGAAAAAAAGGGAATTAATTTCAGAAACTAGAATCACAATTATCAGCCACTACTAAGCAGTAATCAAGGCAGTAGTATTCACAGTTTTAATAAAATCACTGTACAAAATGATAGAATAAATAGTAGTGAAAAAAGTAATACCACTTAAAATTAAAACCTTTCTATGGAAGCTTTTCCATTATAAACTTCCATCTGCACACTGCACAACGTTTTCCTCTGGCTAAATTTCGTTGGACCTATCTTAGAGATACTTTTTATTGGGATAGATCTCTCAACAATAGAGAAGACTTCCTTTTTTTCCTGGTTGCATCTGGGATGTGGCCCTGGCTATACAGTTCTCTGTTTTGGGGCTTTGGCCCTGGGCTAATCAGCAAAATCAGAACAAAATGGCAACTGAGAAAAGGTTTCCTAAGAAAACTGAATTAATCCTTCTGAAGAAAGTTTCTATTCTCTTTGCAGTCCTGGAGTGTACTACTGCGGGTGAAGGACAGAACAAAGGTTTAGGATTTCAGCAGTAGCCTAAAGATTTGGATGCAAACTCTACAGAGCCATCCTGGTTGACAAAGGACAATATTTGATATGCAGCTACTTATGAAACATTTTCTGGTGGACCAGCAAAAGAACACCAACAAAACTTCTAAGTTCAATAGAGGCCTGCTAGTTGCTACATGCTCTACAACAAACAATATTACCATACAACATCCAGCCACATCTCAAATCTCAACAACCTTTTTTTTTATCTTTATTAGTAGTGTTTCTCCTCTTTAGGTCCTATTCCTTCCTTTTGGTTTGCATTTGCAGAACAACAAAACTTGTAAAAGTTCAAGTGAGGCTTGCTACATGTTATACAACAAACAAGATCACTGTACATCATCTAGCCAGACCTCAACAACTATGTTGTTTTGATGTATGGCCTCTGGGAACAAGATTGCCATTTTGGTGTTGTCTTTAGTGGTGTTTCTCCTGCTTTTAGCTCAATGTTGCTGTTACTAATTCCTTTTGTTTGCATTTGCAAAACAACTCTGAAACTTCTGCACTCTGAAACCCATGCTTTCAATAAAATAAAAGCAGCAAAGGGTCCTACTCCTACTTGCCCTACAGTTCATCATCAAAGCGAAAGGTGAATTCAGATAATATGATGGCCATGGCGTGCGTGTATACACCTGGGGAGCGGGGAGGGCGAGGTCGGCGGCGAGCTGGAGGCCGAGTTGGAGCGACTCCGGGTGGGGGTCGGCGAGGCAGGTGACGCGCAACCGCACCGGCGGCTCCGCCCGCCCGACCTCGCCGGCGAGGTGGGCGAGGTTGTGGAGGTGCTCCCTCCCCATCATCCCCACCCCGACTATCCCGTACCTCACCTCCGGCGCCGCCGCAGCCGTCGCCGTAGTCGTCGCCATCCGCTCTCGAGTGAATCTGGACGGGTTTCCGGTCAAGTGGTTCGAATGTTCCCCCGCGCAT
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| CDS seq | ATGCGCGGGGGAACATTCGAACCACTTGACCGGAAACCCGTCCAGATTCACTCGAGAGCGGATGGCGACGACTACGGCGACGGCTGCGGCGGCGCCGGAGGTGAGGTACGGGATAGTCGGGGTGGGGATGATGGGGAGGGAGCACCTCCACAACCTCGCCCACCTCGCCGGCGAGGTCGGGCGGGCGGAGCCGCCGGTGCGGTTGCGCGTCACCTGCCTCGCCGACCCCCACCCGGAGTCGCTCCAACTCGGCCTCCAGCTCGCCGCCGACCTCGCCCTCCCCGCTCCCCAGGTCATGGGGAGCTGCTGGACAGCGGGCTTTGCGACGCTGTTGTCGTGTCATCACCAAACATGACCCACTACCAGATACTCATGGACATCATCAGTCACGCCAAACCACACCACATCCTTGTTGAGAAGCCCTTGTGTACTACAGTACAGGACTGTCAGAAGGTTGTAGAAGCGGCTAAACAGAGATCAGACATACTTGTGCAAGTTGGATTAGAATACAGGTATATGCCTCCGGTTGCTAAGCTTATAGATACTGTTAAAAGTGGCACCTTGGGGCAAGTCAGAATGGTGGCAATCCGTGAACACCGGTTTCCTTTCCTTGTTAAGGTTAACAATTGGAATAGGTTCAATTGCAACAGTGGAGGAACTCTTGTTGAGAAGTGCTGCCATTTTTTTGATTTGATGAGATTGTTTGCAGCTGCAAACCCTGTTCGTGTGATGGCTTCTGGAGCCATTGATGTCAACCACAAGGATGAAATTTATGATGGGAAGGTTCCAGATATTATAGACAATGCATATGTAATAGTAGAATTTGATAATGGCTCTCGTGGCATGCTTGACCTCTGCATGTTTGCTGAAGGTAGTAGGAATGAGCAGGAAATTTCTGTAGTTGGTGACATTGGGAAGGGCGAGGCTTTTGTTCCAGAGAGCATTGTTAGGGTTGGAAAGAGAACAGGAGGTAGAGATGGAGTTGTAACGATAATGGCTGAAGATGAACGGATCAAATATCAAGGTCTTCATCATGGATCTAGCTACCTGGAGCACCTCAATTTCCTGTCTGCCATCAGGCTTCAAGGTGCATCCGGCCCATCGGTCGATTTAACTGATGGCCTATTATCTGTTGCCATCGGCGTGGCTGGGCAGTTGTCCATTGAGAAGGGGCGTTTTGTCACAATTGAAGAGGTCTTGGCTGGTTGA
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| Protein seq | MRGGTFEPLDRKPVQIHSRADGDDYGDGCGGAGGEVRDSRGGDDGEGAPPQPRPPRRRGRAGGAAGAVARHLPRRPPPGVAPTRPPARRRPRPPRSPGHGELLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVEAAKQRSDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAIREHRFPFLVKVNNWNRFNCNSGGTLVEKCCHFFDLMRLFAAANPVRVMASGAIDVNHKDEIYDGKVPDIIDNAYVIVEFDNGSRGMLDLCMFAEGSRNEQEISVVGDIGKGEAFVPESIVRVGKRTGGRDGVVTIMAEDERIKYQGLHHGSSYLEHLNFLSAIRLQGASGPSVDLTDGLLSVAIGVAGQLSIEKGRFVTIEEVLAG |
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| Function | Myo-inositol 2-dehydrogenase [UniProtKB/Swiss-Prot:Q9WYP5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0148267 | OsNip_08t0148267-00 | Chr08 | 2760819 | 2765216 | - | RAP2018-11-26 | ||
| CDS seq | ATGCGCGGGGGAACATTCGAACCACTTGACCGGAAACCCGTCCAGATTCACTCGAGAGCGGATGGCGACGACTACGGCGACGGCTGCGGCGGCGCCGGAGGTGAGGTACGGGATAGTCGGGGTGGGGATGATGGGGAGGGAGCACCTCCACAACCTCGCCCACCTCGCCGGCGAGGTCGGGCGGGCGGAGCCGCCGGTGCGGTTGCGCGTCACCTGCCTCGCCGACCCCCACCCGGAGTCGCTCCAACTCGGCCTCCAGCTCGCCGCCGACCTCGCCCTCCCCGCTCCCCAGGTCATGGGGAGCTGCTGGACAGCGGGCTTTGCGACGCTGTTGTCGTGTCATCACCAAACATGACCCACTACCAGATACTCATGGACATCATCAGTCACGCCAAACCACACCACATCCTTGTTGAGAAGCCCTTGTGTACTACAGTACAGGACTGTCAGAAGGTTGTAGAAGCGGCTAAACAGAGATCAGACATACTTGTGCAAGTTGGATTAGAATACAGGTATATGCCTCCGGTTGCTAAGCTTATAGATACTGTTAAAAGTGGCACCTTGGGGCAAGTCAGAATGGTGGCAATCCGTGAACACCGGTTTCCTTTCCTTGTTAAGGTTAACAATTGGAATAGGTTCAATTGCAACAGTGGAGGAACTCTTGTTGAGAAGTGCTGCCATTTTTTTGATTTGATGAGATTGTTTGCAGCTGCAAACCCTGTTCGTGTGATGGCTTCTGGAGCCATTGATGTCAACCACAAGGATGAAATTTATGATGGGAAGGTTCCAGATATTATAGACAATGCATATGTAATAGTAGAATTTGATAATGGCTCTCGTGGCATGCTTGACCTCTGCATGTTTGCTGAAGGTAGTAGGAATGAGCAGGAAATTTCTGTAGTTGGTGACATTGGGAAGGGCGAGGCTTTTGTTCCAGAGAGCATTGTTAGGGTTGGAAAGAGAACAGGAGGTAGAGATGGAGTTGTAACGATAATGGCTGAAGATGAACGGATCAAATATCAAGGTCTTCATCATGGATCTAGCTACCTGGAGCACCTCAATTTCCTGTCTGCCATCAGGCTTCAAGGTGCATCCGGCCCATCGGTCGATTTAACTGATGGCCTATTATCTGTTGCCATCGGCGTGGCTGGGCAGTTGTCCATTGAGAAGGGGCGTTTTGTCACAATTGAAGAGGTCTTGGCTGGTTGA
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| Protein seq | MRGGTFEPLDRKPVQIHSRADGDDYGDGCGGAGGEVRDSRGGDDGEGAPPQPRPPRRRGRAGGAAGAVARHLPRRPPPGVAPTRPPARRRPRPPRSPGHGELLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVEAAKQRSDILVQVGLEYRYMPPVAKLIDTVKSGTLGQVRMVAIREHRFPFLVKVNNWNRFNCNSGGTLVEKCCHFFDLMRLFAAANPVRVMASGAIDVNHKDEIYDGKVPDIIDNAYVIVEFDNGSRGMLDLCMFAEGSRNEQEISVVGDIGKGEAFVPESIVRVGKRTGGRDGVVTIMAEDERIKYQGLHHGSSYLEHLNFLSAIRLQGASGPSVDLTDGLLSVAIGVAGQLSIEKGRFVTIEEVLAG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0148267 | OsNip_08t0148267-01 | Chr08 | 2760717 | 2765198 | - | IsoSeq | ||
| CDS seq | ATGGCCTATTATCTGTTGCCATCGGCGTGGCTGGGCAGTTGTCCATTGAGAAGGGGCGTTTTGTCACAATTGAAGAGGTCTTGGCTGGTTGATAAGTTCCAAGCAAGTTTTGCTGCTTTGCACTTGACTGTTGTTGTCAATGTA |
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| Protein seq | MAYYLLPSAWLGSCPLRRGVLSQLKRSWLVDKFQASFAALHLTVVVNV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 2763586 | 2764925 | - | OsNip_08t0148267-01 | OsNip_08t0148267-01,OsNip_08t0148267-00 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.751211 | 0.266953 | 1.596804 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05280 | RBH | 0.616433 | 0.000000 | 0.266606 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0148267 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003140 | RBH | 0.320424 | 0.0 | 1.277170 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003200 | RBH | 0.163171 | 0.681836 | 0.200937 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003160 | RBH | 0.000000 | 6.590665 | 3.399019 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003150 | RBH | 0.163130 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002970 | RBH | 0.663722 | 0.000000 | 1.711027 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0041800 | RBH | 4.4232855 | 1.880602 | 1.194004 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002850 | RBH | 0.199703 | 0.000000 | 0.122627 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0046800 | RBH | 4.7404565 | 1.3583395 | 3.0791315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002900 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002930 | RBH | 0.074005 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002750 | RBH | 1.712429 | 6.034769 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002990 | RBH | 0.622064 | 0.000000 | 0.579774 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002910 | RBH | 0.345437 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002890 | RBH | 0.255270 | 0.000000 | 0.381272 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002760 | RBH | 1.055495 | 0.0 | 3.291433 |
