Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0141700 | OGI:08006040 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:2322547-2323638 | ||||||||
| Gene Symbol | INVINH/PMEI | ||||||||||
| DNA seq | AAAAAACTCAAATGTTAACTTGACATTAATTTCTAGAAAAAAAAATATCCAAGCGAATTCTCATAGTGAATCACATTGAACAACAATAAGATTAAAATAGCTTCACCCGTTGCAACACACGGGCATCTTTTCTAGTACAATATAATATATAAAAAACATCAACAAATATATTAAAAATTTGGTCTATACATATGGTCTCAACGTTTCTAACGTAAGTATTTTAAAATTTATTCATAGCTAAAGTTTTTAATGCTTGATATCAGCCATATTTAGGGTGTGTTTAGTTCCTAAAAAAAGTTGAAAGTTTAAAGAAATGGGAGTTTGGAAAAAAAGTTGAAAGTTTATGAGTGTAGGAAAGCTTTTGATGTGATGGAAAGTTGGGAATATGAGGGAAACAAAACACGGCCTTAGAACGAGGAAGGACAAGGGAGGGCGACCAGCAATCCAATCGCACGATTGGTGATGCATGGCAGAACTAGCTGAGTTGCTGGCGCGGCACAACCAACGTAGCGAGGCGCAGAACGAGCACGGTCCAATCCCGATTGGTGATGGCCGTGGCGTACACCGACGTCGTGTTCCCGCTCTCCTCGAACATCTTCGTGGCGCACTCGTCGACGGCAGAGACGGCGGTGACGAGGTCGGGGAGGCTGTCGGCGCTCAGCTTGCAGCGCTTGGCGTCGTCGGCGGTGCTGGCGACGAGCATCGACGCGTCGTCGTACTTGTTCGCGCACACGAGGCACGGCAGCCGCTCGCCGTCGGGCGCCAGCGGGTTGGAGAGCACCTTGCCGACGGCCTCCTTGCCAGCCTTGTACGACTCCGTCGCGGCGTTCGCGGCGGCCACCATGAAGTCCGTCGCCCCCTGCTCGTCCGCCGAGGTTCCCAGCGTCTCGGCGCACGTCCGCGACATGGCCGGGCCCACGCTCGCCTGCTTGCACGCCTCCACGGCCGACATCCTCGGCACGCCGTCGCAGGCGTCGACGACGACGACGACGACGACGCTGCCGGCGACGAGCAAGGTGAGCGCTACAAAGACGGTGGCTGATCTCTCCATGATTTGTCGTGTTAATTGTCTTGAGTGTTTGTTTATAGATT
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| CDS seq | ATGGAGAGATCAGCCACCGTCTTTGTAGCGCTCACCTTGCTCGTCGCCGGCAGCGTCGTCGTCGTCGTCGTCGTCGACGCCTGCGACGGCGTGCCGAGGATGTCGGCCGTGGAGGCGTGCAAGCAGGCGAGCGTGGGCCCGGCCATGTCGCGGACGTGCGCCGAGACGCTGGGAACCTCGGCGGACGAGCAGGGGGCGACGGACTTCATGGTGGCCGCCGCGAACGCCGCGACGGAGTCGTACAAGGCTGGCAAGGAGGCCGTCGGCAAGGTGCTCTCCAACCCGCTGGCGCCCGACGGCGAGCGGCTGCCGTGCCTCGTGTGCGCGAACAAGTACGACGACGCGTCGATGCTCGTCGCCAGCACCGCCGACGACGCCAAGCGCTGCAAGCTGAGCGCCGACAGCCTCCCCGACCTCGTCACCGCCGTCTCTGCCGTCGACGAGTGCGCCACGAAGATGTTCGAGGAGAGCGGGAACACGACGTCGGTGTACGCCACGGCCATCACCAATCGGGATTGGACCGTGCTCGTTCTGCGCCTCGCTACGTTGGTTGTGCCGCGCCAGCAACTCAGCTAG
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| Protein seq | MERSATVFVALTLLVAGSVVVVVVVDACDGVPRMSAVEACKQASVGPAMSRTCAETLGTSADEQGATDFMVAAANAATESYKAGKEAVGKVLSNPLAPDGERLPCLVCANKYDDASMLVASTADDAKRCKLSADSLPDLVTAVSAVDECATKMFEESGNTTSVYATAITNRDWTVLVLRLATLVVPRQQLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0141700 | OsNip_08t0141700-02 | Chr08 | 2322547 | 2323638 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGAGATCAGCCACCGTCTTTGTAGCGCTCACCTTGCTCGTCGCCGGCAGCGTCGTCGTCGTCGTCGTCGTCGACGCCTGCGACGGCGTGCCGAGGATGTCGGCCGTGGAGGCGTGCAAGCAGGCGAGCGTGGGCCCGGCCATGTCGCGGACGTGCGCCGAGACGCTGGGAACCTCGGCGGACGAGCAGGGGGCGACGGACTTCATGGTGGCCGCCGCGAACGCCGCGACGGAGTCGTACAAGGCTGGCAAGGAGGCCGTCGGCAAGGTGCTCTCCAACCCGCTGGCGCCCGACGGCGAGCGGCTGCCGTGCCTCGTGTGCGCGAACAAGTACGACGACGCGTCGATGCTCGTCGCCAGCACCGCCGACGACGCCAAGCGCTGCAAGCTGAGCGCCGACAGCCTCCCCGACCTCGTCACCGCCGTCTCTGCCGTCGACGAGTGCGCCACGAAGATGTTCGAGGAGAGCGGGAACACGACGTCGGTGTACGCCACGGCCATCACCAATCGGGATTGGACCGTGCTCGTTCTGCGCCTCGCTACGTTGGTTGTGCCGCGCCAGCAACTCAGCTAG
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| Protein seq | MERSATVFVALTLLVAGSVVVVVVVDACDGVPRMSAVEACKQASVGPAMSRTCAETLGTSADEQGATDFMVAAANAATESYKAGKEAVGKVLSNPLAPDGERLPCLVCANKYDDASMLVASTADDAKRCKLSADSLPDLVTAVSAVDECATKMFEESGNTTSVYATAITNRDWTVLVLRLATLVVPRQQLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 9.010898 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0142500 | SBH | 0.0 | 0.0 | 0.857352 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04650 | RBH | 0.0 | 0.0 | 2.275814 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0141700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002870 | RBH | 0.0 | 0.0 | 6.615765 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002920 | RBH | 0.0 | 0.0 | 13.224198 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002910 | RBH | 0.0 | 0.0 | 20.293537 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002700 | RBH | 0.0 | 0.0 | 27.931129 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0034400 | RBH | 0.0096485 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002570 | RBH | 0.0 | 0.0 | 5.486846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0039200 | RBH | 0.0060125 | 0 | 0.0087295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002750 | RBH | 0.0 | 0.0 | 3.323088 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002690 | RBH | 0.0 | 0.0 | 5.001332 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002560 | RBH | 0.0 | 0.0 | 28.738674 |
