Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0135800 | OGI:08005290 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:2019190-2026643 | ||||||||
| Gene Symbol | C3H55, OsC3H55 | ||||||||||
| DNA seq | GCGCTATTCCGTTATTCGAAGCGTGCTCTGCTCGCTGCTGCTCCTCCACCTCTCCCAATTAGGGTTTTCGCTGGCTGCGGCGGCGGCGGCGGCGGCGGACGGCGGCGAAGTCAGGCGGCCTCTCCGGCATCCGCTCCGTCGAGGTGAGCCCCTCCCACCCTCTTCCCCTTTCCCCTCCCGTACGGATCCCGCGCCTAGGGTTTCCTCCCTCCCGTAGGTGAACCCTTGCGATTGGGCGTGATTTGGGCGGCTGCTTGCTCGCTCGCGAGCTTGGTTGGTGGCTGCTTTGGCCGGGATTTGGGTGCGTTGGGACTCTCGGGTGTGGGTCTGCGACAGATTAGCACCGGTTGATTTTGTTAGATTAGGGGATTTGGAGGGGTTTGGGATTGCATCCCCAAAGCTGAGATCTTTTATGGCTGGGTCTAAGGATGGATTGCAATCTGTTGGGTCTGTATTCTCCATTCTTCGAGTTGACTATGTGGAGTTGCTTTCTGGTTAGATTAGGTATAGCTGCGTACGAGTTAGATCTTCATGTTGCTAGGACAGTTTCTCGTGTCTGGATTGGAAATTTCTGTCTTGATGTGTATGTTCTCTATACGGGAGCCGCGTTGGGTTTAGGGTTCTTTTCACATTTTTTTTTCTTCATGAGATTAATGGATAAATACCTGGGTTGTGCCTATTATTAATACTAATCAAACACGATTTATTATGTGGCGTACTGGCGAATGATGACAAACTTCGTTCTTTTTTTCAGATGAAAAGCAAATGCGGTATGGTCCTGTGATTTAAGCTGGAAGATCCGATGCTGTGTTGTGAGGCTTGGACACCTTTCACATTCTGAGTCTCTCAGGTTGGTTTCTATACTACAGTGCCATCCTGTTCCTGTTGTTTCTTGATGTGTAGAGTATGTCAACCTTGCTTGCTTGTCATGTTTCCTTAAGTTCTCGATGTTCCATGCATTGACGTAATACAGTCTGTAGACCATCCTTCTGAAAGAAGGGCTCCTAGCAAACCATGTAGATCCCAAGTGAAGAACCCCTAATTAACTTGCTGTTGTGGACTTGTGGTTCTCTTTTGTGTCATCTTTCTGTTTCCTTCATTTGTGGTGATTGTTGGCTGTTTCCCTTGCTTGTATGTGCTTTTCCATTCTTAGAATTGCATGCAAATACACTGTTAATGCACCCAAATTTACTGACCAATGTTGTGCCTATTGTTTAATCTTGAAAGTTGAAACCAAGAACTGTTGTGTTCTTTTTTGCTTAGATAACCATCAGATGGAATATGACATGCTAGCTATATGGTCCATGTAAAACGACTCTATATGGTTGGCTTCTTGGATTCTTTAGACAATGTAGGGTTAGCGTTTTGATGTGCTTAGCGCTAGAATTGGGAGATGATTGTGGTAGGTGAGGGGACATAGGAATTCATGCGAGCTGATAGAATTATCTTTCTCACATGCAGGATTATGTAAATGCCACTTTTTGGAGTGTCTGCCCTTTTGGTTTAGTCTCCATTCCTCAAGACTATAGCTAGCAATTATATAAAGAAAAAAAATTGAACTGTTAATTGCCACCAAGTCGGCAAAATCGCTGGAACACAACATTCGAGGGAGAAACTTCAGTGGAATACGAGTAGTATCAGTGCCCCAAGGTCTCTGCAATCAGAGACAGTAACAACTGAACCTTAAGTATCGACCAAGTCTGGCAAAACACTGGAACACAGTAAATGAAGGAGAATTTTGGTGCAATCTGTTGATGCCCCAGATAACAGCAATTACTGCTTGACATTGTTTTCTTGGTAGGTTGTGTTTGTAGATTTAGCCGTCCTGTAAGTGTAGAAAGCAAACATTCTTGTCATATATTTACCTGTAAGTTGTATAGGTTTATTTGAGTGGTTATAATGTATATGTTGAATGAAGTATTCCATGGTTTTTGATTGTGAACTATGCCAGATGAATAAAAAACACTGGTTTGTACCTGGGTGTGGAATTTATAAGTTCTTCACAAGTCTGATGACTCTTACAGTCCTGCTGTAAAAAAGTTATTGCTTCTTATCTCTGCATAAGGTTCATTTTCCATTGTGTGATTGTGTGCAATCTTGATGTTGGGCATTTTCTCCACCTTTTGACTGTGCCAAATCCAATCTCCACAGTTCTGGCCAATTATTCAAATCGCATGCTTAGTTGTGCTAAATCTGCTATAATAATTATTCCATTCTACTTTTATGAAGCCGTGTGACTAATCGTCAGCTAGTTGATAAATCGGATAGGGAGCACGACTTGAGGGATACGACTTTGACTTGGCACCAGAGGACGCATTGGAGCAAGGGCAGCTACAGGGTGCCGCTTGGCAGGCCTGGTTTATCGAGCCCATTGAGTGAAAAGGGGGATGAGAGGATTGTCGGGTCCATTGGGCACAGCAAGTAGTAGCAGACTAGCAGTAGAAGTAACTGGTATATATAGTAATAACAGTCTGAAGTCAACTAAATGACAGTCACGACTATCCTTGGAAGATGGGCAATCGACTTTACTGACTAAAAAAACATCTATTCTAATATTCCACAGGACAAAACTGTAGGCTATACTTTATACTTATTGCCTTTCTTGGGCATTCAAATGGACAGTGAAATACGTACTGATGGAAATTGCAGGCTATAGTACTATACTTTATACTGTTGCAGTATGGTGTTAATATCCCAACCCGCTTACGCACATGTACAAGGAAGCAGATGGGTGATGCTGAAGTTTCAGCAATTGCTGGCAAAAATACGTGTTCAGTTTGGTACATGTTGATAAGTTGCTAAATTGTTGAGTGTCCTGTTGTTTGATCTTAGAAATAAGCAAGATAGATGTGCTGACTGTAGTCTGATGTGGGGAAGGTAATCAAAGCGCTCTAGAGGATAACTACTCACATTCCTGTTGGGACACGAGGGAGTTCCTGAAAATCCTCAAAAATAATTCATGGAAATAGTGCACACTAGGGTTTGAGTGCTTGTGAATTCCCTTCAACAAGTGTTGGTATACGTAGTTGCCTACAAAGAACAAATGAAACAAAAATACAGAGAAAAGTATGTCCTGAGCTTTTTGGTGAGGGTATCAATTAAACAAAAATACCAGAGAAAAGTATGTCCTGAGCTTTTTGGTGAGGGTATCAATTATTTGCCACCCCTAAAATTGATTCTTATGAGGATTTGCCACTCAAATGTCCAAGCAATGTACCGTATGACTAAAATTTGGAAAGTGTAGGTGGCATATAACTTGTACAATAAGAAATTTTTCTTAGTTTTTTGGGACATATCTTATGTTGTATCTATATAATGAGAGTGGTTAGCCACTTAGGCGGTTACCTTGAATCCTTGATAGTGGAAGGTCTGTTTCAGTATACCCCTCCTGGCTTTAGCGTTCTTTTACTAGATATGTCTTACTTGATCCTGGATCCTACTTATTATACAGCTGTCAGTCAGTTGTTAAGTGTCTCAACTTTGTTGATGTTTCTGAATCATGTCCTTTGAGAAAGCTATATCTTTTGCGCATACTGCAGCAGTCACTTTTGTTGTTGAAGTATTCTATTCTTCCATTGATTATAATATATGCAAACGATCTTTGATTATTTCAGATAGACCGACAAGAGTACTTTCGGATAAGGGAAAGGAGGTTGTGCACCAGGAACTACTTCTTTGTTGGACTAATAAAGAAGGGTTAAAATGACTGGTGAAACAAGGAAAGAACGGTCCAAGTGGGATACAAAAGGACCTCCTGATATAGTGGAGATCAGTGAAGATGAGTCTCTTCCTATGAATATGGATGATCATAAAAAGGGCAATGATGATCATAGAAAGGGCAGTGATTTGCTCCCTTCTCAGGATTTTGGTCATGGTAATGACAAGCAAATTGGTGAATCTCTGAACCTCAAATCTACTGTCTCTATGCACCATGGTAGCGCTGGACATGAGCAGGATCGAGCTGATGGACTCAACAAAGATATCAAGGAAAGGTCATCCAAGGCATCCTCTGAAAGGTTGCCTCTTAGAATGGGTGATGAGGATCATAATAAAAATGACTGGCACAACAGAGGCTTTGAAAAGGCAGCTGGTAACCAAGGTATGAGCAGATATGCAGATGACAGAAGGCGTGGTGATGGGTGGGGTACAACTCTTAGCCGTGGTTATTCTTCTAGGATATCATCATCTGGTCCAGATGCGTGGAAGAGAAGTCGCAGTCCACTATCTCCAAGAGGTGGTTGGAACAGGTCACGCAGGTGTGTTTGAACAAGTAATTAGTTTAATTAACTGTGCAACTGGTAACTTTTTTCTTGTATATTGTGTAGCAGCTGTTGGAGATGATTTTAAAATGAAATTTATCAAGAATGAAATATCCAAGATAGATTGTATGGTTTGTTTGTTCTATAAATGTCAAAGATGATGCTCACATAAGAAGTTTTTACAATTTCTATGGAATACATTTATTTGAAATTCTAATGAAAAATTCAATTTACTAGTTTCTTTTCCCTGCCTCTTTAATATATTTGTTTTCTTTTACACTTTACAGGAACAGAAGCCGTTCTAGAAGTAGAAGCAGGAGCATAGGGCGAGGTAGAGGTAGAAGCAGAAGCAGAAGCAGAAGTCCTTATTTCAGTGACCGTGGATCTGAATGGAGGGTTGAGAGAAGCAGATCATCTGGAGGACCTGCTCTTCCCTGTAGGGATTTTGTAGCTGGTAGATGCAGAAGAGGCTCAAATTGCAGGTTCCCTCATGAAGATGGTGTGCGCAGGCAGTTTGATGAGCATTATCCTGTAGATTCAAGGGAAAAGTATGGGCATCAGAATAGGGACTTCATGGATCCACGAGAACAAGATGACTATTTAAGGAATAGGCCACCTCGAGGTGGCCATTATGATGAAGGAACTTGGGAAAGATCTGAACCTCGAAGGGAGTATCGGTCTACGATGCCATGCCATGATTTTGTCAAAGGAAGATGCAGTAGGGGTGCGAATTGCCGATATGTTCATGATGATTCCACCCCTCATGGTGGATGGAGAGATGAGGTTAGAGATAATGCTATTGGTAGAAGTGGCCCTGATTCATCATATGGGAACAGGACTGAGCACCGTAGAACAAATAAAAACCCCTGCAAATTTTTTGCTAACGGTGGATGCCGTCGTGGCCAAAATTGCCCATATCTCCACGAGGAAGCTTCCCAGAGCCAAATGGGACTGGGTGCACCTGATGAGCCTGGTTACACTGGTGGGCCTACAACAAGAGGAGATTACTTGAGCTGGAGTGAACAAAATAATTCTGTGCAGGCAAGTTCTCATGTTTTGTCAAGAGATGACAGAGAAAACCCTGTTCCTCAGGGTACTGGCAGAAATGATTCTCGATATGAGAACAAAAACCGGCATTCCAAAGATGCTGGAAGTAGTCAGTACCAGATATTCCCTCAGGATGATTTTGGTTCAGTAGGGCAAAACAAACCTGAAATAGCTGCTTCACAACTGCCACAGTTCATACCTTCTGTCCAAACAGGCACAGAGAGCATAAACATTGACAAGGTATCTGACATGGGTGGTCAGAGTGGACCTGGAACCGTTGGCAATTTGAGTATGCAAATCGGGATGCATTCTGCTAATCTTTTAGGAGGGCATAACTTGGGCCAAAAAGCAGAGAGCCAAGATGCAATTTCTCAAATTTCTGCTGCACCATCTCTTCCGGGCGCCACCCAATTGCAGAATACTACATCCTCAGTGCCTTTGAATAGCCAAGTTCAGCAAAGTGACTTTTCATTACATCCAAATAGGCAGGACCAGTTTGCAGTTCCTCATGCAACTACAAATAACTCTGCTCCTAGCATGCAGAGCCAGCCAGTTGCTCCTTATATGGGGCACAGCCAACACGGCTACATTATGGGGGCACAATCATTACCAGATCTCTCTGTGCATAATGGACAAATTTTCAATGTTGGTCAAGTTCCACAGAATCTTCCAACAATCGTGCATGCTGGGCAGAATCAGGCAACAAGTGACACACCCAACCTGGGCCGAGATAGTGGTGATCAAGGCTTGCAAAACACACATAATTTCCAGCCTGTTGCTCCAAATGAGCAAACTCAGAGTCAAACCTTGCAAGGGTTATCAGTGGTGGCCAGTTCCAGCTCAGTTGATATGGCTGGAGCTCCTCTTTCTCACAATGCAGTGTCAAGTCAGGAAGAAGTCCGTCGTGTTACTGCATCTTTGGCCCAGTACTTTGTTCCTTCTCTGACTGCTGATACCTCTGGGCTGCAGTCGTCTCAGCCTGATCCAAATTCGAGTTTGATGAACAATTCGTCTGCTGCACCTCAAGCAGTTCAACCTAATCACTGGCCTTGGTTACAACAAGCAGGAATGGTCCAACCTTCACATATTGTTCCACCTGAACAACCAGCTCCCCAGACATTTCAGGCACCAATGGCTGCTGGTAGTAGTAATGGCAACCCTCTGCTTTTACCCCATTCGGTTGCACCGACTGTTCCTGCTGCTGCCTTGGCGACCAATGAAACTACACCTGCAGAAAATAAGAAAGAAGAACCAAAGGACACTGATGCTGAGGCTAATGAAGATGGTGAGAACAAGAAGAGCAAGGATTCCAAGGCGTTGAAGATGTTTAAGCTTGCACTGGCTGACTTTGTGAAGGATGCACTTAAGCCCACCTGGAAAGAGGGTCAAATGAGCAGAGAGGTTCATAAAACAATTGTGAAGAAGGTTGTCGACAAAGTTACGACCACAGTTGAAAATACTCCTCAAACAAAAGAGAAGATTGATATTTACATGTCCTACTCCAGAGAAAAGCTAAACAAACTCGTCCAGGTAACAATGAGCTTCCACTCTCAGCGCTGTCCACCTGGCATCTCTTGTCATTTGAGAAACTAAACTCACACATATAGGCTAATTGGGCTGTGTTTGTGTGTAGGCATATGTTGGCAAGTATGCCAAGAAAGATTGAAGACATGGTGCCTGTTCTTCCTGCATTGTATTAGAAAGATTGAAGCAGCCTTAGCTGTCCCCAAGTTTAGGATTCTTCTTTTGTCTTCAAAGCTAGTTTAGGATCCTGTAATTTAGGGATTTGATTAAAATCACAAACATATTTTTCCCCTCCCAATTTCAATGTTCACTATGGTGGTTTGACAGGTAGAGTATTTTGCTGGTAGGGCAACTGAACCAAATGTTACCTCAATGTAACTTTTGTAGAATATTCATCCGAGTCATGAAGCTTTCTGTATGAGATTGTACAATCTTTGGATCATCTGTATGAGCATAAGCTGAGATACACCCGATGGTTGTGTTTGTGCTAATCTGTGCTGTCCCTTTCAGTGTGCAGCACAAACAAGAAGTGTAAGCTAGCTGCTACTACCAGTCTATTTTGTCACATGTCAGGGACTCAGGGTTAGGAACATATTTTTAACCTGAATTTTATTCGCTGGATCC
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| CDS seq | ATGACTGGTGAAACAAGGAAAGAACGGTCCAAGTGGGATACAAAAGGACCTCCTGATATAGTGGAGATCAGTGAAGATGAGTCTCTTCCTATGAATATGGATGATCATAAAAAGGGCAATGATGATCATAGAAAGGGCAGTGATTTGCTCCCTTCTCAGGATTTTGGTCATGGTAATGACAAGCAAATTGGTGAATCTCTGAACCTCAAATCTACTGTCTCTATGCACCATGGTAGCGCTGGACATGAGCAGGATCGAGCTGATGGACTCAACAAAGATATCAAGGAAAGGTCATCCAAGGCATCCTCTGAAAGGTTGCCTCTTAGAATGGGTGATGAGGATCATAATAAAAATGACTGGCACAACAGAGGCTTTGAAAAGGCAGCTGGTAACCAAGGTATGAGCAGATATGCAGATGACAGAAGGCGTGGTGATGGGTGGGGTACAACTCTTAGCCGTGGTTATTCTTCTAGGATATCATCATCTGGTCCAGATGCGTGGAAGAGAAGTCGCAGTCCACTATCTCCAAGAGGTGGTTGGAACAGGTCACGCAGGAACAGAAGCCGTTCTAGAAGTAGAAGCAGGAGCATAGGGCGAGGTAGAGGTAGAAGCAGAAGCAGAAGCAGAAGTCCTTATTTCAGTGACCGTGGATCTGAATGGAGGGTTGAGAGAAGCAGATCATCTGGAGGACCTGCTCTTCCCTGTAGGGATTTTGTAGCTGGTAGATGCAGAAGAGGCTCAAATTGCAGGTTCCCTCATGAAGATGGTGTGCGCAGGCAGTTTGATGAGCATTATCCTGTAGATTCAAGGGAAAAGTATGGGCATCAGAATAGGGACTTCATGGATCCACGAGAACAAGATGACTATTTAAGGAATAGGCCACCTCGAGGTGGCCATTATGATGAAGGAACTTGGGAAAGATCTGAACCTCGAAGGGAGTATCGGTCTACGATGCCATGCCATGATTTTGTCAAAGGAAGATGCAGTAGGGGTGCGAATTGCCGATATGTTCATGATGATTCCACCCCTCATGGTGGATGGAGAGATGAGGTTAGAGATAATGCTATTGGTAGAAGTGGCCCTGATTCATCATATGGGAACAGGACTGAGCACCGTAGAACAAATAAAAACCCCTGCAAATTTTTTGCTAACGGTGGATGCCGTCGTGGCCAAAATTGCCCATATCTCCACGAGGAAGCTTCCCAGAGCCAAATGGGACTGGGTGCACCTGATGAGCCTGGTTACACTGGTGGGCCTACAACAAGAGGAGATTACTTGAGCTGGAGTGAACAAAATAATTCTGTGCAGGCAAGTTCTCATGTTTTGTCAAGAGATGACAGAGAAAACCCTGTTCCTCAGGGTACTGGCAGAAATGATTCTCGATATGAGAACAAAAACCGGCATTCCAAAGATGCTGGAAGTAGTCAGTACCAGATATTCCCTCAGGATGATTTTGGTTCAGTAGGGCAAAACAAACCTGAAATAGCTGCTTCACAACTGCCACAGTTCATACCTTCTGTCCAAACAGGCACAGAGAGCATAAACATTGACAAGGTATCTGACATGGGTGGTCAGAGTGGACCTGGAACCGTTGGCAATTTGAGTATGCAAATCGGGATGCATTCTGCTAATCTTTTAGGAGGGCATAACTTGGGCCAAAAAGCAGAGAGCCAAGATGCAATTTCTCAAATTTCTGCTGCACCATCTCTTCCGGGCGCCACCCAATTGCAGAATACTACATCCTCAGTGCCTTTGAATAGCCAAGTTCAGCAAAGTGACTTTTCATTACATCCAAATAGGCAGGACCAGTTTGCAGTTCCTCATGCAACTACAAATAACTCTGCTCCTAGCATGCAGAGCCAGCCAGTTGCTCCTTATATGGGGCACAGCCAACACGGCTACATTATGGGGGCACAATCATTACCAGATCTCTCTGTGCATAATGGACAAATTTTCAATGTTGGTCAAGTTCCACAGAATCTTCCAACAATCGTGCATGCTGGGCAGAATCAGGCAACAAGTGACACACCCAACCTGGGCCGAGATAGTGGTGATCAAGGCTTGCAAAACACACATAATTTCCAGCCTGTTGCTCCAAATGAGCAAACTCAGAGTCAAACCTTGCAAGGGTTATCAGTGGTGGCCAGTTCCAGCTCAGTTGATATGGCTGGAGCTCCTCTTTCTCACAATGCAGTGTCAAGTCAGGAAGAAGTCCGTCGTGTTACTGCATCTTTGGCCCAGTACTTTGTTCCTTCTCTGACTGCTGATACCTCTGGGCTGCAGTCGTCTCAGCCTGATCCAAATTCGAGTTTGATGAACAATTCGTCTGCTGCACCTCAAGCAGTTCAACCTAATCACTGGCCTTGGTTACAACAAGCAGGAATGGTCCAACCTTCACATATTGTTCCACCTGAACAACCAGCTCCCCAGACATTTCAGGCACCAATGGCTGCTGGTAGTAGTAATGGCAACCCTCTGCTTTTACCCCATTCGGTTGCACCGACTGTTCCTGCTGCTGCCTTGGCGACCAATGAAACTACACCTGCAGAAAATAAGAAAGAAGAACCAAAGGACACTGATGCTGAGGCTAATGAAGATGGTGAGAACAAGAAGAGCAAGGATTCCAAGGCGTTGAAGATGTTTAAGCTTGCACTGGCTGACTTTGTGAAGGATGCACTTAAGCCCACCTGGAAAGAGGGTCAAATGAGCAGAGAGGTTCATAAAACAATTGTGAAGAAGGTTGTCGACAAAGTTACGACCACAGTTGAAAATACTCCTCAAACAAAAGAGAAGATTGATATTTACATGTCCTACTCCAGAGAAAAGCTAAACAAACTCGTCCAGGCATATGTTGGCAAGTATGCCAAGAAAGATTGA
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| Protein seq | MTGETRKERSKWDTKGPPDIVEISEDESLPMNMDDHKKGNDDHRKGSDLLPSQDFGHGNDKQIGESLNLKSTVSMHHGSAGHEQDRADGLNKDIKERSSKASSERLPLRMGDEDHNKNDWHNRGFEKAAGNQGMSRYADDRRRGDGWGTTLSRGYSSRISSSGPDAWKRSRSPLSPRGGWNRSRRNRSRSRSRSRSIGRGRGRSRSRSRSPYFSDRGSEWRVERSRSSGGPALPCRDFVAGRCRRGSNCRFPHEDGVRRQFDEHYPVDSREKYGHQNRDFMDPREQDDYLRNRPPRGGHYDEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSGPDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGYTGGPTTRGDYLSWSEQNNSVQASSHVLSRDDRENPVPQGTGRNDSRYENKNRHSKDAGSSQYQIFPQDDFGSVGQNKPEIAASQLPQFIPSVQTGTESINIDKVSDMGGQSGPGTVGNLSMQIGMHSANLLGGHNLGQKAESQDAISQISAAPSLPGATQLQNTTSSVPLNSQVQQSDFSLHPNRQDQFAVPHATTNNSAPSMQSQPVAPYMGHSQHGYIMGAQSLPDLSVHNGQIFNVGQVPQNLPTIVHAGQNQATSDTPNLGRDSGDQGLQNTHNFQPVAPNEQTQSQTLQGLSVVASSSSVDMAGAPLSHNAVSSQEEVRRVTASLAQYFVPSLTADTSGLQSSQPDPNSSLMNNSSAAPQAVQPNHWPWLQQAGMVQPSHIVPPEQPAPQTFQAPMAAGSSNGNPLLLPHSVAPTVPAAALATNETTPAENKKEEPKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEGQMSREVHKTIVKKVVDKVTTTVENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAKKD |
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| Function | Zinc finger CCCH domain-containing protein 55 [UniProtKB/Swiss-Prot:Q6YYC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0135800 | OsNip_08t0135800-01 | Chr08 | 2019190 | 2026643 | + | RAP2018-11-26 | ||
| CDS seq | ATGACTGGTGAAACAAGGAAAGAACGGTCCAAGTGGGATACAAAAGGACCTCCTGATATAGTGGAGATCAGTGAAGATGAGTCTCTTCCTATGAATATGGATGATCATAAAAAGGGCAATGATGATCATAGAAAGGGCAGTGATTTGCTCCCTTCTCAGGATTTTGGTCATGGTAATGACAAGCAAATTGGTGAATCTCTGAACCTCAAATCTACTGTCTCTATGCACCATGGTAGCGCTGGACATGAGCAGGATCGAGCTGATGGACTCAACAAAGATATCAAGGAAAGGTCATCCAAGGCATCCTCTGAAAGGTTGCCTCTTAGAATGGGTGATGAGGATCATAATAAAAATGACTGGCACAACAGAGGCTTTGAAAAGGCAGCTGGTAACCAAGGTATGAGCAGATATGCAGATGACAGAAGGCGTGGTGATGGGTGGGGTACAACTCTTAGCCGTGGTTATTCTTCTAGGATATCATCATCTGGTCCAGATGCGTGGAAGAGAAGTCGCAGTCCACTATCTCCAAGAGGTGGTTGGAACAGGTCACGCAGGAACAGAAGCCGTTCTAGAAGTAGAAGCAGGAGCATAGGGCGAGGTAGAGGTAGAAGCAGAAGCAGAAGCAGAAGTCCTTATTTCAGTGACCGTGGATCTGAATGGAGGGTTGAGAGAAGCAGATCATCTGGAGGACCTGCTCTTCCCTGTAGGGATTTTGTAGCTGGTAGATGCAGAAGAGGCTCAAATTGCAGGTTCCCTCATGAAGATGGTGTGCGCAGGCAGTTTGATGAGCATTATCCTGTAGATTCAAGGGAAAAGTATGGGCATCAGAATAGGGACTTCATGGATCCACGAGAACAAGATGACTATTTAAGGAATAGGCCACCTCGAGGTGGCCATTATGATGAAGGAACTTGGGAAAGATCTGAACCTCGAAGGGAGTATCGGTCTACGATGCCATGCCATGATTTTGTCAAAGGAAGATGCAGTAGGGGTGCGAATTGCCGATATGTTCATGATGATTCCACCCCTCATGGTGGATGGAGAGATGAGGTTAGAGATAATGCTATTGGTAGAAGTGGCCCTGATTCATCATATGGGAACAGGACTGAGCACCGTAGAACAAATAAAAACCCCTGCAAATTTTTTGCTAACGGTGGATGCCGTCGTGGCCAAAATTGCCCATATCTCCACGAGGAAGCTTCCCAGAGCCAAATGGGACTGGGTGCACCTGATGAGCCTGGTTACACTGGTGGGCCTACAACAAGAGGAGATTACTTGAGCTGGAGTGAACAAAATAATTCTGTGCAGGCAAGTTCTCATGTTTTGTCAAGAGATGACAGAGAAAACCCTGTTCCTCAGGGTACTGGCAGAAATGATTCTCGATATGAGAACAAAAACCGGCATTCCAAAGATGCTGGAAGTAGTCAGTACCAGATATTCCCTCAGGATGATTTTGGTTCAGTAGGGCAAAACAAACCTGAAATAGCTGCTTCACAACTGCCACAGTTCATACCTTCTGTCCAAACAGGCACAGAGAGCATAAACATTGACAAGGTATCTGACATGGGTGGTCAGAGTGGACCTGGAACCGTTGGCAATTTGAGTATGCAAATCGGGATGCATTCTGCTAATCTTTTAGGAGGGCATAACTTGGGCCAAAAAGCAGAGAGCCAAGATGCAATTTCTCAAATTTCTGCTGCACCATCTCTTCCGGGCGCCACCCAATTGCAGAATACTACATCCTCAGTGCCTTTGAATAGCCAAGTTCAGCAAAGTGACTTTTCATTACATCCAAATAGGCAGGACCAGTTTGCAGTTCCTCATGCAACTACAAATAACTCTGCTCCTAGCATGCAGAGCCAGCCAGTTGCTCCTTATATGGGGCACAGCCAACACGGCTACATTATGGGGGCACAATCATTACCAGATCTCTCTGTGCATAATGGACAAATTTTCAATGTTGGTCAAGTTCCACAGAATCTTCCAACAATCGTGCATGCTGGGCAGAATCAGGCAACAAGTGACACACCCAACCTGGGCCGAGATAGTGGTGATCAAGGCTTGCAAAACACACATAATTTCCAGCCTGTTGCTCCAAATGAGCAAACTCAGAGTCAAACCTTGCAAGGGTTATCAGTGGTGGCCAGTTCCAGCTCAGTTGATATGGCTGGAGCTCCTCTTTCTCACAATGCAGTGTCAAGTCAGGAAGAAGTCCGTCGTGTTACTGCATCTTTGGCCCAGTACTTTGTTCCTTCTCTGACTGCTGATACCTCTGGGCTGCAGTCGTCTCAGCCTGATCCAAATTCGAGTTTGATGAACAATTCGTCTGCTGCACCTCAAGCAGTTCAACCTAATCACTGGCCTTGGTTACAACAAGCAGGAATGGTCCAACCTTCACATATTGTTCCACCTGAACAACCAGCTCCCCAGACATTTCAGGCACCAATGGCTGCTGGTAGTAGTAATGGCAACCCTCTGCTTTTACCCCATTCGGTTGCACCGACTGTTCCTGCTGCTGCCTTGGCGACCAATGAAACTACACCTGCAGAAAATAAGAAAGAAGAACCAAAGGACACTGATGCTGAGGCTAATGAAGATGGTGAGAACAAGAAGAGCAAGGATTCCAAGGCGTTGAAGATGTTTAAGCTTGCACTGGCTGACTTTGTGAAGGATGCACTTAAGCCCACCTGGAAAGAGGGTCAAATGAGCAGAGAGGTTCATAAAACAATTGTGAAGAAGGTTGTCGACAAAGTTACGACCACAGTTGAAAATACTCCTCAAACAAAAGAGAAGATTGATATTTACATGTCCTACTCCAGAGAAAAGCTAAACAAACTCGTCCAGGCATATGTTGGCAAGTATGCCAAGAAAGATTGA
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| Protein seq | MTGETRKERSKWDTKGPPDIVEISEDESLPMNMDDHKKGNDDHRKGSDLLPSQDFGHGNDKQIGESLNLKSTVSMHHGSAGHEQDRADGLNKDIKERSSKASSERLPLRMGDEDHNKNDWHNRGFEKAAGNQGMSRYADDRRRGDGWGTTLSRGYSSRISSSGPDAWKRSRSPLSPRGGWNRSRRNRSRSRSRSRSIGRGRGRSRSRSRSPYFSDRGSEWRVERSRSSGGPALPCRDFVAGRCRRGSNCRFPHEDGVRRQFDEHYPVDSREKYGHQNRDFMDPREQDDYLRNRPPRGGHYDEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSGPDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGYTGGPTTRGDYLSWSEQNNSVQASSHVLSRDDRENPVPQGTGRNDSRYENKNRHSKDAGSSQYQIFPQDDFGSVGQNKPEIAASQLPQFIPSVQTGTESINIDKVSDMGGQSGPGTVGNLSMQIGMHSANLLGGHNLGQKAESQDAISQISAAPSLPGATQLQNTTSSVPLNSQVQQSDFSLHPNRQDQFAVPHATTNNSAPSMQSQPVAPYMGHSQHGYIMGAQSLPDLSVHNGQIFNVGQVPQNLPTIVHAGQNQATSDTPNLGRDSGDQGLQNTHNFQPVAPNEQTQSQTLQGLSVVASSSSVDMAGAPLSHNAVSSQEEVRRVTASLAQYFVPSLTADTSGLQSSQPDPNSSLMNNSSAAPQAVQPNHWPWLQQAGMVQPSHIVPPEQPAPQTFQAPMAAGSSNGNPLLLPHSVAPTVPAAALATNETTPAENKKEEPKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEGQMSREVHKTIVKKVVDKVTTTVENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAKKD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0135800 | OsNip_08t0135800-02 | Chr08 | 2019203 | 2021167 | + | RAP2018-11-26 | ||
| CDS seq | ATTCGAAGCGTGCTCTGCTCGCTGCTGCTCCTCCACCTCTCCCAATTAGGGTTTTCGCTGGCTGCGGCGGCGGCGGCGGCGGCGGACGGCGGCGAAGTCAGGCGGCCTCTCCGGCATCCGCTCCGTCGAGATGAAAAGCAAATGCGGTATGGTCCTGTGATTTAA |
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| Protein seq | IRSVLCSLLLLHLSQLGFSLAAAAAAAADGGEVRRPLRHPLRRDEKQMRYGPVI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0135800 | OsNip_08t0135800-03 | Chr08 | 2019203 | 2021755 | + | RAP2018-11-26 | ||
| CDS seq | ATTCGAAGCGTGCTCTGCTCGCTGCTGCTCCTCCACCTCTCCCAATTAGGGTTTTCGCTGGCTGCGGCGGCGGCGGCGGCGGCGGACGGCGGCGAAGTCAGGCGGCCTCTCCGGCATCCGCTCCGTCGAGATGAAAAGCAAATGCGGTATGGTCCTGTGATTTAA |
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| Protein seq | IRSVLCSLLLLHLSQLGFSLAAAAAAAADGGEVRRPLRHPLRRDEKQMRYGPVI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0135800 | OsNip_08t0135800-04 | Chr08 | 2024016 | 2026508 | + | RAP2018-11-26 | ||
| CDS seq | GACTTCATGGATCCACGAGAACAAGATGACTATTTAAGGAATAGGCCACCTCGAGGTGGCCATTATGATGAAGGAACTTGGGAAAGATCTGAACCTCGAAGGGAGTATCGGTCTACGATGCCATGCCATGATTTTGTCAAAGGAAGATGCAGTAGGGGTGCGAATTGCCGATATGTTCATGATGATTCCACCCCTCATGGTGGATGGAGAGATGAGGTTAGAGATAATGCTATTGGTAGAAGTGGCCCTGATTCATCATATGGGAACAGGACTGAGCACCGTAGAACAAATAAAAACCCCTGCAAATTTTTTGCTAACGGTGGATGCCGTCGTGGCCAAAATTGCCCATATCTCCACGAGGAAGCTTCCCAGAGCCAAATGGGACTGGGTGCACCTGATGAGCCTGGTTACACTGGTGGGCCTACAACAAGAGGAGATTACTTGAGCTGGAGTGAACAAAATAATTCTGTGCAGGCAAGTTCTCATGTTTTGTCAAGAGATGACAGAGAAAACCCTGTTCCTCAGGGTACTGGCAGAAATGATTCTCGATATGAGAACAAAAACCGGCATTCCAAAGATGCTGGAAGTAGTCAGTACCAGATATTCCCTCAGGATGATTTTGGTTCAGTAGGGCAAAACAAACCTGAAATAGCTGCTTCACAACTGCCACAGTTCATACCTTCTGTCCAAACAGGCACAGAGAGCATAAACATTGACAAGGTATCTGACATGGGTGGTCAGAGTGGACCTGGAACCGTTGGCAATTTGAGTATGCAAATCGGGATGCATTCTGCTAATCTTTTAGGAGGGCATAACTTGGGCCAAAAAGCAGAGAGCCAAGATGCAATTTCTCAAATTTCTGCTGCACCATCTCTTCCGGGCGCCACCCAATTGCAGAATACTACATCCTCAGTGCCTTTGAATAGCCAAGTTCAGCAAAGTGACTTTTCATTACATCCAAATAGGCAGGACCAGTTTGCAGTTCCTCATGCAACTACAAATAACTCTGCTCCTAGCATGCAGAGCCAGCCAGTTGCTCCTTATATGGGGCACAGCCAACACGGCTACATTATGGGGGCACAATCATTACCAGATCTCTCTGTGCATAATGGACAAATTTTCAATGTTGGTCAAGTTCCACAGAATCTTCCAACAATCGTGCATGCTGGGCAGAATCAGGCAACAAGTGACACACCCAACCTGGGCCGAGATAGTGGTGATCAAGGCTTGCAAAACACACATAATTTCCAGCCTGTTGCTCCAAATGAGCAAACTCAGAGTCAAACCTTGCAAGGGTTATCAGTGGTGGCCAGTTCCAGCTCAGTTGATATGGCTGGAGCTCCTCTTTCTCACAATGCAGTGTCAAGTCAGGAAGAAGTCCGTCGTGTTACTGCATCTTTGGCCCAGTACTTTGTTCCTTCTCTGACTGCTGATACCTCTGGGCTGCAGTCGTCTCAGCCTGATCCAAATTCGAGTTTGATGAACAATTCGTCTGCTGCACCTCAAGCAGTTCAACCTAATCACTGGCCTTGGTTACAACAAGCAGGAATGGTCCAACCTTCACATATTGTTCCACCTGAACAACCAGCTCCCCAGACATTTCAGGCACCAATGGCTGCTGGTAGTAGTAATGGCAACCCTCTGCTTTTACCCCATTCGGTTGCACCGACTGTTCCTGCTGCTGCCTTGGCGACCAATGAAACTACACCTGCAGAAAATAAGAAAGAAGAACCAAAGGACACTGATGCTGAGGCTAATGAAGATGGTGAGAACAAGAAGAGCAAGGATTCCAAGGCGTTGAAGATGTTTAAGCTTGCACTGGCTGACTTTGTGAAGGATGCACTTAAGCCCACCTGGAAAGAGGGTCAAATGAGCAGAGAGGTTCATAAAACAATTGTGAAGAAGGTTGTCGACAAAGTTACGACCACAGTTGAAAATACTCCTCAAACAAAAGAGAAGATTGATATTTACATGTCCTACTCCAGAGAAAAGCTAAACAAACTCGTCCAGGCATATGTTGGCAAGTATGCCAAGAAAGATTGA
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| Protein seq | DFMDPREQDDYLRNRPPRGGHYDEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSGPDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGYTGGPTTRGDYLSWSEQNNSVQASSHVLSRDDRENPVPQGTGRNDSRYENKNRHSKDAGSSQYQIFPQDDFGSVGQNKPEIAASQLPQFIPSVQTGTESINIDKVSDMGGQSGPGTVGNLSMQIGMHSANLLGGHNLGQKAESQDAISQISAAPSLPGATQLQNTTSSVPLNSQVQQSDFSLHPNRQDQFAVPHATTNNSAPSMQSQPVAPYMGHSQHGYIMGAQSLPDLSVHNGQIFNVGQVPQNLPTIVHAGQNQATSDTPNLGRDSGDQGLQNTHNFQPVAPNEQTQSQTLQGLSVVASSSSVDMAGAPLSHNAVSSQEEVRRVTASLAQYFVPSLTADTSGLQSSQPDPNSSLMNNSSAAPQAVQPNHWPWLQQAGMVQPSHIVPPEQPAPQTFQAPMAAGSSNGNPLLLPHSVAPTVPAAALATNETTPAENKKEEPKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEGQMSREVHKTIVKKVVDKVTTTVENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAKKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr08 | 2020039 | 2021755 | + | OsNip_08t0135800-02 | OsNip_08t0135800-02,OsNip_08t0135800-03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.297049 | 4.239714 | 5.066894 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04170 | RBH | 1.307340 | 1.450995 | 0.797153 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0135800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002470 | RBH | 1.487603 | 2.472203 | 6.758766 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002520 | RBH | 0.138992 | 2.484997 | 3.058517 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002510 | RBH | 4.040009 | 6.634901 | 10.166860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002490 | RBH | 0.263143 | 0.364496 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002320 | RBH | 6.255967 | 12.110706 | 13.452394 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0029500 | RBH | 8.84283 | 16.401865 | 15.1252565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002210 | RBH | 0.256289 | 0.754723 | 1.755832 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0034200 | RBH | 8.8130845 | 15.1621685 | 20.43524 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002330 | RBH | 0.201271 | 0.224546 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002330 | RBH | 0.753331 | 8.602305 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002160 | RBH | 4.476146 | 19.655769 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002370 | RBH | 1.134757 | 0.605976 | 1.376102 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002290 | RBH | 0.437909 | 8.474412 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002300 | RBH | 0.563923 | 3.047038 | 3.205060 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002200 | RBH | 2.978834 | 12.674424 | 6.037925 |
