Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0105700 | OGI:08000780 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:296973-298367 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCAAAAGCTAGGGTCTCTGGACAGAGCCCATGCATTGACGAAGACACGTGTGCCAGAGGGTATTGTGTAGCCCTCGATATCACATTCAGCAATAGAGAGGTAGGGTACGAGAAGTGGCCCTGCGAGGTGTAGCCGAAGCATCTCCTTTATCACTGCCTTTAGTAGGGCATTCTTCCCAGTTGCTCTTCAGTAACTATCTCCTGCCCTCTTGGTACCACACTCCTAACCTCGGCCTGTAGCTTGGCCATTAGTTGGGGCTTCCGAATCAACTCGGCCATGGCGTATTCAAGCTCTATGTACGCCGTGTCCGTGCCGCCCTCGAACATGATCACCAAGATTGCCTTGACGTTGTCTCTAGTGAGACCGTATTCATGCTGAATGGAGAGAAGGACATCGATGAAATCACTCTCTTCATTGTCTAGGTCTAGCACCGAGGAGGACCGTTTGGTGGCATGATCATCGATGAGCTTGTCGAGCAGTTGGTCCCATCTCTTGTTGACATTATGGGCCTTGGCGCAAAGCAACCTCCTAACAGTAGTTACCCTCGCCAAATTGGGGAAGTAATCCTCAAGATTGAAACCACCGAGTAGCAATGAGTTGGCCTGAATTAGTTCCCAAAACATTTGGTTTTGACCCTCTTCACGGAAGAACTTACCAGACACGGCGTGACACACTATGTCATTGGTAAACCAATTGAGCAACTCACTCAGATCGACAGTAGTGCGTGCCACCGCTGCCTCGTTGATCCTGGCCATTACCAGGCGCACCTCCTGTTGTCTTGCCCTGCTGTAGGAGCGAACCTTCTTGTTGGTGAGGAGGTGTGTGGTGGCAATCTTCTTGACTTGCCGCCAATACTCGCCATAGGGAGAGAATGCTACATCTGACGAGCCATAGAAGAGGATGTCGGTGACGGCAGAGTAGGTCCGTGACGCGAACACGTGGTCATTCGTCCGCAAGATGGCCTGCGCCGCACGAGCGGATGACACCACGAGAGTCGGGACGGTGCCGAGGCGGAGAAGCATTAGGTCAGGGCCGTGCTTGATGGCAAGTTCACGGAAGGAGACATACGGGAGGGAGCCAATGAGGTGAAGGTGGCCAATCACAGGGAGCCTTCCTGGCGGCGAGGGGAGCTTGTCAAACAGCTCGTCGTCCCTGGTTTTCGCCCGGCAAAGTTTGATGAGTAGGAGGAGAAGAGGGCACAGGAGCGCCAGCAGGAGAGTGTAGTAGGATGCCATTGTTGGCTGTGGAGCTACCGGCGATGGATGCTCATGCTCATGGTTGTGGTGCTGGTGCAAGAGTAGTAGTGGAATTGGCACTAGCATCACAGCCATGGCTGCCTAATCTCTCTAGTGTCTTCTCCAAGAGGTTGGTGTGTGAGACCTGTCACTTGATGA
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| CDS seq | ATGGCTGTGATGCTAGTGCCAATTCCACTACTACTCTTGCACCAGCACCACAACCATGAGCATGAGCATCCATCGCCGGTAGCTCCACAGCCAACAATGGCATCCTACTACACTCTCCTGCTGGCGCTCCTGTGCCCTCTTCTCCTCCTACTCATCAAACTTTGCCGGGCGAAAACCAGGGACGACGAGCTGTTTGACAAGCTCCCCTCGCCGCCAGGAAGGCTCCCTGTGATTGGCCACCTTCACCTCATTGGCTCCCTCCCGTATGTCTCCTTCCGTGAACTTGCCATCAAGCACGGCCCTGACCTAATGCTTCTCCGCCTCGGCACCGTCCCGACTCTCGTGGTGTCATCCGCTCGTGCGGCGCAGGCCATCTTGCGGACGAATGACCACGTGTTCGCGTCACGGACCTACTCTGCCGTCACCGACATCCTCTTCTATGGCTCGTCAGATGTAGCATTCTCTCCCTATGGCGAGTATTGGCGGCAAGTCAAGAAGATTGCCACCACACACCTCCTCACCAACAAGAAGGTTCGCTCCTACAGCAGGGCAAGACAACAGGAGGTGCGCCTGGTAATGGCCAGGATCAACGAGGCAGCGGTGGCACGCACTACTGTCGATCTGAGTGAGTTGCTCAATTGGTTTACCAATGACATAGTGTGTCACGCCGTGTCTGGTAAGTTCTTCCGTGAAGAGGGTCAAAACCAAATGTTTTGGGAACTAATTCAGGCCAACTCATTGCTACTCGGTGGTTTCAATCTTGAGGATTACTTCCCCAATTTGGCGAGGGTAACTACTGTTAGGAGGTTGCTTTGCGCCAAGGCCCATAATGTCAACAAGAGATGGGACCAACTGCTCGACAAGCTCATCGATGATCATGCCACCAAACGGTCCTCCTCGGTGCTAGACCTAGACAATGAAGAGAGTGATTTCATCGATGTCCTTCTCTCCATTCAGCATGAATACGGTCTCACTAGAGACAACGTCAAGGCAATCTTGGTGATCATGTTCGAGGGCGGCACGGACACGGCGTACATAGAGCTTGAATACGCCATGGCCGAGTTGATTCGGAAGCCCCAACTAATGGCCAAGCTACAGGCCGAGGTTAGGAGTGTGGTACCAAGAGGGCAGGAGATAGTTACTGAAGAGCAACTGGGAAGAATGCCCTACTAA
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| Protein seq | MAVMLVPIPLLLLHQHHNHEHEHPSPVAPQPTMASYYTLLLALLCPLLLLLIKLCRAKTRDDELFDKLPSPPGRLPVIGHLHLIGSLPYVSFRELAIKHGPDLMLLRLGTVPTLVVSSARAAQAILRTNDHVFASRTYSAVTDILFYGSSDVAFSPYGEYWRQVKKIATTHLLTNKKVRSYSRARQQEVRLVMARINEAAVARTTVDLSELLNWFTNDIVCHAVSGKFFREEGQNQMFWELIQANSLLLGGFNLEDYFPNLARVTTVRRLLCAKAHNVNKRWDQLLDKLIDDHATKRSSSVLDLDNEESDFIDVLLSIQHEYGLTRDNVKAILVIMFEGGTDTAYIELEYAMAELIRKPQLMAKLQAEVRSVVPRGQEIVTEEQLGRMPY |
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| Function | indole-2-monooxygenase [UniProtKB/Swiss-Prot:Q43257] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0105700 | OsNip_08t0105700-01 | Chr08 | 296973 | 298367 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTGTGATGCTAGTGCCAATTCCACTACTACTCTTGCACCAGCACCACAACCATGAGCATGAGCATCCATCGCCGGTAGCTCCACAGCCAACAATGGCATCCTACTACACTCTCCTGCTGGCGCTCCTGTGCCCTCTTCTCCTCCTACTCATCAAACTTTGCCGGGCGAAAACCAGGGACGACGAGCTGTTTGACAAGCTCCCCTCGCCGCCAGGAAGGCTCCCTGTGATTGGCCACCTTCACCTCATTGGCTCCCTCCCGTATGTCTCCTTCCGTGAACTTGCCATCAAGCACGGCCCTGACCTAATGCTTCTCCGCCTCGGCACCGTCCCGACTCTCGTGGTGTCATCCGCTCGTGCGGCGCAGGCCATCTTGCGGACGAATGACCACGTGTTCGCGTCACGGACCTACTCTGCCGTCACCGACATCCTCTTCTATGGCTCGTCAGATGTAGCATTCTCTCCCTATGGCGAGTATTGGCGGCAAGTCAAGAAGATTGCCACCACACACCTCCTCACCAACAAGAAGGTTCGCTCCTACAGCAGGGCAAGACAACAGGAGGTGCGCCTGGTAATGGCCAGGATCAACGAGGCAGCGGTGGCACGCACTACTGTCGATCTGAGTGAGTTGCTCAATTGGTTTACCAATGACATAGTGTGTCACGCCGTGTCTGGTAAGTTCTTCCGTGAAGAGGGTCAAAACCAAATGTTTTGGGAACTAATTCAGGCCAACTCATTGCTACTCGGTGGTTTCAATCTTGAGGATTACTTCCCCAATTTGGCGAGGGTAACTACTGTTAGGAGGTTGCTTTGCGCCAAGGCCCATAATGTCAACAAGAGATGGGACCAACTGCTCGACAAGCTCATCGATGATCATGCCACCAAACGGTCCTCCTCGGTGCTAGACCTAGACAATGAAGAGAGTGATTTCATCGATGTCCTTCTCTCCATTCAGCATGAATACGGTCTCACTAGAGACAACGTCAAGGCAATCTTGGTGATCATGTTCGAGGGCGGCACGGACACGGCGTACATAGAGCTTGAATACGCCATGGCCGAGTTGATTCGGAAGCCCCAACTAATGGCCAAGCTACAGGCCGAGGTTAGGAGTGTGGTACCAAGAGGGCAGGAGATAGTTACTGAAGAGCAACTGGGAAGAATGCCCTACTAA
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| Protein seq | MAVMLVPIPLLLLHQHHNHEHEHPSPVAPQPTMASYYTLLLALLCPLLLLLIKLCRAKTRDDELFDKLPSPPGRLPVIGHLHLIGSLPYVSFRELAIKHGPDLMLLRLGTVPTLVVSSARAAQAILRTNDHVFASRTYSAVTDILFYGSSDVAFSPYGEYWRQVKKIATTHLLTNKKVRSYSRARQQEVRLVMARINEAAVARTTVDLSELLNWFTNDIVCHAVSGKFFREEGQNQMFWELIQANSLLLGGFNLEDYFPNLARVTTVRRLLCAKAHNVNKRWDQLLDKLIDDHATKRSSSVLDLDNEESDFIDVLLSIQHEYGLTRDNVKAILVIMFEGGTDTAYIELEYAMAELIRKPQLMAKLQAEVRSVVPRGQEIVTEEQLGRMPY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0105400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01480 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0105700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000410 | SBH | 0.169760 | 4.532401 | 0.370738 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000420 | SBH | 0.152894 | 0.0 | 0.736120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000430 | SBH | 0.392786 | 0.000000 | 1.186766 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000410 | RBH | 0.070805 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000390 | SBH | 1.740742 | 1.000346 | 1.986186 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0004900 | RBH | 0.4342805 | 0.0328885 | 0.0146225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000360 | SBH | 0.121571 | 0.039746 | 0.327777 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0004800 | RBH | 0.362219 | 0.0281035 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000480 | SBH | 0.098998 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000410 | RBH | 0.270187 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000410 | RBH | 0.728155 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000410 | SBH | 0.240295 | 0.0 | 0.378947 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000410 | SBH | 0.101750 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000420 | SBH | 0.137117 | 0.0 | 0.423772 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000420 | RBH | 0.092042 | 0.000000 | 2.258423 |
