Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0101100 | OGI:08000080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:71348-72715 | ||||||||
| Gene Symbol | HMGB | ||||||||||
| DNA seq | CAGCATTTGTTGTTTCAATTAAGTTGATGAAATCAGATACAAGTCATGAGTCAATTCACCAAGGAAGCAACATATAGAGACAGAGAGCAGCAAAGGAAGGAAGCCCTTGAGAATGGAATGGGGAAGAAGTTGCACTCCAATCGAATCCAAAAAAAGAGGGATAATTAAGTCGTCTAATCATTCATTCATTCATTCACTTGATGTGCAGGTCACACTGCAAGCACTAGTAGTTCTAGTACTAGAAGATCACCACCACCAGAATCAATCGATACTGCTGCTCCCACTAGCATACTAGCAATGTGATGGATCCGCCATTTACAAAAAGAGAAGGAATTATCCATCCATCCATCCATTGGACCGGTGGCCTAGATGTCGTCGTCTAGCTCGTTCTTCTCTTCCTCTGCACCATCTTCATCTTCTTGGTCGTCTTCATCAGTGCCTTTCTTGGGTGGCTGATCTACCTCCTGCTCGCCTGCGTTGCCACCAACATTGTTCTCCTGCCATCACAATATTGATCAATTGTTTGTCCAGTAAAAAACGGAGGGAGGACCGGAGGGAAGGCAAAGAGAAAGGAAAAAAGAGCATACGTCGCTGCGCTCGCCATTGTGGTACTCGGCCTTGAGCTCTGCAGCCTTGTCCAAGTAAGGCTTCTTGTCCTCGTCAGACATGGATTTCCACCTCTCCCCTCCTTCCTTGGCGACAGCGGAGACGCTCTTGTTGTCAGGGTGCTCCGCCTTGTACTCCTTCCTGAAGTCACTCCTGCATATTAAGCATATCATACATCTTCTTCTTCTTCTTCCATGGGAATGGAAGCCAAGGGAAGGGAAGGAATGTTTGTTACTTACATGAAGAGGAAAAAGGCAGTGGGTGGGCGCTTGCCCTTTTTGGCCCCCTCGCCATTGTTGTTGTTGTTCTTGCCGCTCTTCTTCTTGCTCGCTGCCACCTCCACGGCCTGCTCCACCACCTGAGCCTCTGTAAGCACAGATCATAGGAAGAAGATGACGATGAGAATCGCAGATTCGTAGGCAGACAAAGAGAGAGAGAAATGAGCAGCAACCTAGGCTGATGCGGATCTTGTCGTCGAGGCTGCAGTTGTGCATGTCGATGAGGACCACGGAGACGCTCTTGCCGCAAGCCTCGCTGCAAACCAAACCCAACTCACTCCCATGTTTGGATTGTATTGGAAATGCAAATGAAAGGGGGAAATCAAAGAAAAAGGAAACGGACTGACCAGCGGGTGAAGGCGCTGCCGTCGCGCGCGCGCTTCAGGACGGCGGAATCCGTCGCCTCCACGCGCTTCCTCGTGCGTGCGCCGGATTTCCCCGCCATTACAGAGGAGAGGAGGAGGGCTATGGATTTGGAGGAGAT
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| CDS seq | ATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCGACGGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAG
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| Protein seq | MAGKSGARTRKRVEATDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKIRISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEYHNGERSDENNVGGNAGEQEVDQPPKKGTDEDDQEDEDGAEEEKNELDDDI |
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| Function | High mobility group B protein 7 [UniProtKB/Swiss-Prot:Q8LDF9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0101100 | OsNip_08t0101100-01 | Chr08 | 71348 | 72715 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGGGAAATCCGGCGCACGCACGAGGAAGCGCGTGGAGGCGACGGATTCCGCCGTCCTGAAGCGCGCGCGCGACGGCAGCGCCTTCACCCGCTGCGAGGCTTGCGGCAAGAGCGTCTCCGTGGTCCTCATCGACATGCACAACTGCAGCCTCGACGACAAGATCCGCATCAGCCTAGAGGCTCAGGTGGTGGAGCAGGCCGTGGAGGTGGCAGCGAGCAAGAAGAAGAGCGGCAAGAACAACAACAACAATGGCGAGGGGGCCAAAAAGGGCAAGCGCCCACCCACTGCCTTTTTCCTCTTCATGAGTGACTTCAGGAAGGAGTACAAGGCGGAGCACCCTGACAACAAGAGCGTCTCCGCTGTCGCCAAGGAAGGAGGGGAGAGGTGGAAATCCATGTCTGACGAGGACAAGAAGCCTTACTTGGACAAGGCTGCAGAGCTCAAGGCCGAGTACCACAATGGCGAGCGCAGCGACGAGAACAATGTTGGTGGCAACGCAGGCGAGCAGGAGGTAGATCAGCCACCCAAGAAAGGCACTGATGAAGACGACCAAGAAGATGAAGATGGTGCAGAGGAAGAGAAGAACGAGCTAGACGACGACATCTAG
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| Protein seq | MAGKSGARTRKRVEATDSAVLKRARDGSAFTRCEACGKSVSVVLIDMHNCSLDDKIRISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKKPYLDKAAELKAEYHNGERSDENNVGGNAGEQEVDQPPKKGTDEDDQEDEDGAEEEKNELDDDI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.218590 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01100 | RBH | 0.0 | 0.0 | 0.824470 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0101100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000090 | RBH | 0.0 | 12.695299 | 1.092177 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000090 | RBH | 0.0 | 6.480158 | 2.239090 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000090 | RBH | 0.0 | 26.181581 | 1.604022 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000090 | RBH | 0.0 | 0.395508 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000070 | RBH | 0.0 | 17.770399 | 4.899365 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0000700 | RBH | 11.529353 | 3.424009 | 1.1645945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000090 | RBH | 0.0 | 0.767514 | 0.477897 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0000700 | RBH | 13.325059 | 0.0483255 | 53.5699255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000090 | RBH | 0.0 | 0.470054 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000080 | RBH | 0.0 | 25.488878 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000090 | RBH | 0.0 | 27.041307 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000090 | RBH | 0.0 | 2.168437 | 0.449628 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000090 | RBH | 0.0 | 10.749471 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000090 | RBH | 0.0 | 6.842668 | 0.668346 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000080 | RBH | 0.0 | 18.015623 | 0.000000 |
