Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0678300 | OGI:07078450 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28710749-28712470 | ||||||||
| Gene Symbol | CIPK29, OsCIPK29, OsSnRK3.25, SnRK3.25 | ||||||||||
| DNA seq | TCCAACTCAAAACGAGCCCCCAAATCCCAGAGAGGAGTCGCGAGCTTTTCATCAATCCTCTGATTTTCCCCCAGGTTTCCCCACCCGCAAAGAGCCTCAAAATTCCCCCTCCTCTGTCGCGACCGATCGCGACGACGGCGCCGGACGAGCAGACACCGCCGCCACGATGCCGCCCTCCACCGGCTCCGTCCCACCCGCCGCATCAACGCCGGCGGCTGGGGACGAGGCCACCGCCGCCGGGAGGGTACTCCTCGGCAGGTACGAGCTCGGCGGCCTCCTCGGCCGCGGCGCCTCCGCCAAGGTGTACCTCGCCCGCGACCTCCTCACCGGCCGCGACGTCGCCATCAAGTCCTTCCCCAACCCCCGCCACGGCGGCGGCCTCCGCGGCGGCGAGGAGGATGTCCTCCTCCGCCCCGCGCCCATCGAGCGGGAGGCGGCCATTCTCCCCAGGCTGCGCCACCGCCACGTGATGCGCCTCCGCGAGATTCTGGCCACGCGCAAGAAGGTCCACTTCGTCCTCGACCTCGCCGCCGGCGGCGAGCTCTTCTCCCTGCTCGACGCGTCCGGCCGCATGACGGAGGACCTCGCGCGGCACTACTTCCGGCAGCTCATCTCCGCCGTCCGGTACTGCCACTCCCGTGGCGTGTACCACCGCGACATCAAGCCGGAGAACCTCCTCCTCGACGACGCGGGCGACCTCAAGGTGGCCGACTTCGGCCTCGGCGCCGTCGCCGACGGCGCCCTCCACCACACCCTCTGCGGCACCCCGGCCTACGTGGCGCCGGAGATCCTGTCGAGGAAGGGGTACAACCCAGCGAAGGTGGACATCTGGTCCTGCGGCGTCGTCCTCTTCGTGCTCGCCGCGGGGTACCTCCCCTTCAACGACGCCAGCCTCGTCAACATGTACCGCAAGATCTACGCCGGCAAGTTCCGGTGCCCGGCCTGGTTCTCGCCGGAGCTCCGGTGCCTGGTCCGCCGCATCCTGGACCCCAACCCGGCGACCCGCATTGACACGGAGGAGATCATCACCCACCCGTGGTTCCGCCAGGACGCGAGCCACTTCGCGATGGCGCAGCTGATGCAGCACGGCCACGACGAGGAGGCCAAATTCAAGACCGAGTTCAAGGAGGACGACATGGCCCGGGACATGACGGCGTTCGACATACTCGCATGCTCCCCTGGCTCCGACCTCTCCGGCCTCTTCGGCGCCGAGCCGGGGAAGGAGCGGGTGTTCGTCGGCGAGCCGGCGGCGGCGGTGCTATCCCGAGTGGAGGAGGCCGGGAAGAAGGAAGGGTACATGGTAACGAGAGAAGGGAAGAAGGGCACCGGGCCGGTGTACGTGAAAGGCGAGAACGGCGGCATTGTGGCCAAGGTCTGCGTGTTCAAGATCGCCGACGCGGTGTCCGTCGTCGAGGTGGTGAAAGGCTACGGCGCCGAGGCCGCCCGGTTCTGGAAGGCCAGGCTCGAGCCGGCGATGAAGCCTCCGGCAGCCATCTGAGCTGCCGACGAGAGGGTGAGCTGGTTCGTTGCCGCGTGCTTGCAAATTGCAATCGAGATTTGTTCTTGTGTTGTTCAGTGTAACCGTGTGAGTGATGTCTCCCGTCGGCGAATTGTTTGGGTTTTTTTGGGATGTATTTGTTCATGGACGGCGTCATGGAGGTGGTATGTAAGCACGATTTGGTGATGTCTGGGCTGGAAAATAAGAGGCAAAAAATTCCCTGC
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| CDS seq | ATGCCGCCCTCCACCGGCTCCGTCCCACCCGCCGCATCAACGCCGGCGGCTGGGGACGAGGCCACCGCCGCCGGGAGGGTACTCCTCGGCAGGTACGAGCTCGGCGGCCTCCTCGGCCGCGGCGCCTCCGCCAAGGTGTACCTCGCCCGCGACCTCCTCACCGGCCGCGACGTCGCCATCAAGTCCTTCCCCAACCCCCGCCACGGCGGCGGCCTCCGCGGCGGCGAGGAGGATGTCCTCCTCCGCCCCGCGCCCATCGAGCGGGAGGCGGCCATTCTCCCCAGGCTGCGCCACCGCCACGTGATGCGCCTCCGCGAGATTCTGGCCACGCGCAAGAAGGTCCACTTCGTCCTCGACCTCGCCGCCGGCGGCGAGCTCTTCTCCCTGCTCGACGCGTCCGGCCGCATGACGGAGGACCTCGCGCGGCACTACTTCCGGCAGCTCATCTCCGCCGTCCGGTACTGCCACTCCCGTGGCGTGTACCACCGCGACATCAAGCCGGAGAACCTCCTCCTCGACGACGCGGGCGACCTCAAGGTGGCCGACTTCGGCCTCGGCGCCGTCGCCGACGGCGCCCTCCACCACACCCTCTGCGGCACCCCGGCCTACGTGGCGCCGGAGATCCTGTCGAGGAAGGGGTACAACCCAGCGAAGGTGGACATCTGGTCCTGCGGCGTCGTCCTCTTCGTGCTCGCCGCGGGGTACCTCCCCTTCAACGACGCCAGCCTCGTCAACATGTACCGCAAGATCTACGCCGGCAAGTTCCGGTGCCCGGCCTGGTTCTCGCCGGAGCTCCGGTGCCTGGTCCGCCGCATCCTGGACCCCAACCCGGCGACCCGCATTGACACGGAGGAGATCATCACCCACCCGTGGTTCCGCCAGGACGCGAGCCACTTCGCGATGGCGCAGCTGATGCAGCACGGCCACGACGAGGAGGCCAAATTCAAGACCGAGTTCAAGGAGGACGACATGGCCCGGGACATGACGGCGTTCGACATACTCGCATGCTCCCCTGGCTCCGACCTCTCCGGCCTCTTCGGCGCCGAGCCGGGGAAGGAGCGGGTGTTCGTCGGCGAGCCGGCGGCGGCGGTGCTATCCCGAGTGGAGGAGGCCGGGAAGAAGGAAGGGTACATGGTAACGAGAGAAGGGAAGAAGGGCACCGGGCCGGTGTACGTGAAAGGCGAGAACGGCGGCATTGTGGCCAAGGTCTGCGTGTTCAAGATCGCCGACGCGGTGTCCGTCGTCGAGGTGGTGAAAGGCTACGGCGCCGAGGCCGCCCGGTTCTGGAAGGCCAGGCTCGAGCCGGCGATGAAGCCTCCGGCAGCCATCTGA
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| Protein seq | MPPSTGSVPPAASTPAAGDEATAAGRVLLGRYELGGLLGRGASAKVYLARDLLTGRDVAIKSFPNPRHGGGLRGGEEDVLLRPAPIEREAAILPRLRHRHVMRLREILATRKKVHFVLDLAAGGELFSLLDASGRMTEDLARHYFRQLISAVRYCHSRGVYHRDIKPENLLLDDAGDLKVADFGLGAVADGALHHTLCGTPAYVAPEILSRKGYNPAKVDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPAWFSPELRCLVRRILDPNPATRIDTEEIITHPWFRQDASHFAMAQLMQHGHDEEAKFKTEFKEDDMARDMTAFDILACSPGSDLSGLFGAEPGKERVFVGEPAAAVLSRVEEAGKKEGYMVTREGKKGTGPVYVKGENGGIVAKVCVFKIADAVSVVEVVKGYGAEAARFWKARLEPAMKPPAAI |
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| Function | CBL-interacting protein kinase 29 [UniProtKB/Swiss-Prot:Q7XIW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0678300 | OsNip_07t0678300-01 | Chr07 | 28710749 | 28712470 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGCCCTCCACCGGCTCCGTCCCACCCGCCGCATCAACGCCGGCGGCTGGGGACGAGGCCACCGCCGCCGGGAGGGTACTCCTCGGCAGGTACGAGCTCGGCGGCCTCCTCGGCCGCGGCGCCTCCGCCAAGGTGTACCTCGCCCGCGACCTCCTCACCGGCCGCGACGTCGCCATCAAGTCCTTCCCCAACCCCCGCCACGGCGGCGGCCTCCGCGGCGGCGAGGAGGATGTCCTCCTCCGCCCCGCGCCCATCGAGCGGGAGGCGGCCATTCTCCCCAGGCTGCGCCACCGCCACGTGATGCGCCTCCGCGAGATTCTGGCCACGCGCAAGAAGGTCCACTTCGTCCTCGACCTCGCCGCCGGCGGCGAGCTCTTCTCCCTGCTCGACGCGTCCGGCCGCATGACGGAGGACCTCGCGCGGCACTACTTCCGGCAGCTCATCTCCGCCGTCCGGTACTGCCACTCCCGTGGCGTGTACCACCGCGACATCAAGCCGGAGAACCTCCTCCTCGACGACGCGGGCGACCTCAAGGTGGCCGACTTCGGCCTCGGCGCCGTCGCCGACGGCGCCCTCCACCACACCCTCTGCGGCACCCCGGCCTACGTGGCGCCGGAGATCCTGTCGAGGAAGGGGTACAACCCAGCGAAGGTGGACATCTGGTCCTGCGGCGTCGTCCTCTTCGTGCTCGCCGCGGGGTACCTCCCCTTCAACGACGCCAGCCTCGTCAACATGTACCGCAAGATCTACGCCGGCAAGTTCCGGTGCCCGGCCTGGTTCTCGCCGGAGCTCCGGTGCCTGGTCCGCCGCATCCTGGACCCCAACCCGGCGACCCGCATTGACACGGAGGAGATCATCACCCACCCGTGGTTCCGCCAGGACGCGAGCCACTTCGCGATGGCGCAGCTGATGCAGCACGGCCACGACGAGGAGGCCAAATTCAAGACCGAGTTCAAGGAGGACGACATGGCCCGGGACATGACGGCGTTCGACATACTCGCATGCTCCCCTGGCTCCGACCTCTCCGGCCTCTTCGGCGCCGAGCCGGGGAAGGAGCGGGTGTTCGTCGGCGAGCCGGCGGCGGCGGTGCTATCCCGAGTGGAGGAGGCCGGGAAGAAGGAAGGGTACATGGTAACGAGAGAAGGGAAGAAGGGCACCGGGCCGGTGTACGTGAAAGGCGAGAACGGCGGCATTGTGGCCAAGGTCTGCGTGTTCAAGATCGCCGACGCGGTGTCCGTCGTCGAGGTGGTGAAAGGCTACGGCGCCGAGGCCGCCCGGTTCTGGAAGGCCAGGCTCGAGCCGGCGATGAAGCCTCCGGCAGCCATCTGA
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| Protein seq | MPPSTGSVPPAASTPAAGDEATAAGRVLLGRYELGGLLGRGASAKVYLARDLLTGRDVAIKSFPNPRHGGGLRGGEEDVLLRPAPIEREAAILPRLRHRHVMRLREILATRKKVHFVLDLAAGGELFSLLDASGRMTEDLARHYFRQLISAVRYCHSRGVYHRDIKPENLLLDDAGDLKVADFGLGAVADGALHHTLCGTPAYVAPEILSRKGYNPAKVDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPAWFSPELRCLVRRILDPNPATRIDTEEIITHPWFRQDASHFAMAQLMQHGHDEEAKFKTEFKEDDMARDMTAFDILACSPGSDLSGLFGAEPGKERVFVGEPAAAVLSRVEEAGKKEGYMVTREGKKGTGPVYVKGENGGIVAKVCVFKIADAVSVVEVVKGYGAEAARFWKARLEPAMKPPAAI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.458463 | 7.158689 | 13.010767 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0339900 | SBH | 19.059217 | 15.735124 | 2.354243 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48090 | RBH | 3.626623 | 4.246479 | 2.709296 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0678300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027710 | RBH | 1.024413 | 6.006651 | 19.735350 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027740 | RBH | 1.355467 | 9.773878 | 10.212338 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027540 | RBH | 2.643523 | 6.983279 | 21.127136 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027320 | RBH | 0.445506 | 0.568509 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027630 | RBH | 14.740023 | 23.419949 | 29.226755 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0467700 | RBH | 17.7608355 | 16.65255 | 30.893146 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028080 | RBH | 1.172690 | 1.296951 | 3.805340 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0481800 | RBH | 22.2452305 | 12.092011 | 24.216567 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027360 | RBH | 1.015439 | 0.099847 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027810 | RBH | 1.468678 | 8.689176 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027530 | RBH | 18.048752 | 15.916523 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027860 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027420 | RBH | 0.869947 | 7.869866 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027480 | RBH | 0.591808 | 3.942226 | 6.762600 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027230 | RBH | 1.656925 | 1.483991 | 41.516884 |
