Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0671200 | OGI:07077290 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28373368-28375043 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATTTGTTCGTGGTTTAACATTTTGCTTTTTATCCGTGTGAAGGCTCCCTACAAGTGCAGAATACAGAGCATCATCTGGGGTCAATCCATCTCCCAGCATATTGTCGTACAACTGGAATGCCTCCTCTGATCTTCCTTCCTTGGCCAGGCCGGATATCAGAGCAGTATATGCCACCAAGTTGGGTTTAGACCCCCTCTGCTTCATCTCTTCAAACAGCCTCAATGCCACATCCACCTTCCCATTGACACAGTGCCCATGGACTAACGCTGCATAAGAGTATATGTCTGGAACAAGCCCTTTCTTTTCCATCTCATTTTTGAACCTCTCAGCCTCCCGTATGCTCCCCTTCTTGATGTACCCATCCATCATAACATTGTAGGTTACCAGACTAGGTTCTGCCCCATTTCCTGCCATCTCTCGAAACAGCCTTCTTGCCTCGACCATGTCACCTTCATTGCAATGGATGCTGATCAACGTAGTGTAGCTTACATGGTTTGGCCTGACACCCTTCTCAATCATGATACGCAATAGATTCTTGGCCTCATCCATTCTATTCGCCCTGCGGAGGCCACATGCTAGTGTGTTGTATGTATACACATCCAGCTCGATGCCCATCTTCTCCATGATCATCTTTATTTCAAGAGCCTTGTCCACCATATTTTTCCGACAATACCCATCAATCATTGTATTGAAAACAATTTGGTTAATTCCCACCCCTCGAACTTGCATATCTGTCACCAACATCTCTGCAGCCTCCATCTGCCCAATCTTGCAGAACCCATTGATCAATGCTCCATACGTATGCTCGTTTGGCTCAATGCCATTCCCAACACATTCATCAAACACCTCCGATGCCCTCCGCACATTCCCTGCACGGCAGTATGCGTTGATGACTGAAGAATAGAAGTAGACATCCCCTGAGAGATTCTTACTCTTCATCTCTTCAAACACAGCCTCAACCTTGGTGATATCTCTGGCTGCCGATAAACCATCGACGAGGATTGTATATGTCCCGACTGTTGGCTCAATGCCTTCATTTTCCATTACCTTTAGCATCTCTGCCACCCGATCATCATCTTTTTCGCGCGTGTATGCGTCTAGCAGCGAGTTATAGCACAAGGCGTTAACCTTCACGCCGTGTCGAGGCATTTCGTCGAGCAGCTGGCGGGCGTGGGCGACGCGGCCAGACTTGCAGTATCCGTCGACGACGACAGACGCCGAGAGAGGCGTGACGGAGTCAGGACAAGAAGTGGCAGCCTGTTTGAGGAGGTCGGCGGCGGTGTCGAGGTGGCCTGCTCGCCGGAGCGAGAGGAGGGAGGAGGTGAGGGAGCGGGGGTCAAGCCCCCCGAGGCGGGATACGGTTAGCTCGAAGGCCTCGGCGGCGCGAGCGGCGGCGCCCGAGTCCGCGTAGGCGCGGAAGAGCATGTCGTAGAAGGCAGTGACGGCGTGCCGCGGCGCGGCGCGAGGGAGGGAGGCGGCGGCCAGGTCGGCGAAGGGGACGGCGAGCAGGCGGGGCGTGACGAGGGAGGCGAGTAGCGACTTAGCGGCCGCGAAGCGGCGCGCGGCGAGGAGCGAAACGAACCCCGCCAGCGGCGTGGCCGGTAACTTCGCCGGCGCCGCCGCCGCCGCCGGCGACTCGGAGTCGGACGCCATCGGCGGGGGAGCGAGGTGGA
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| CDS seq | ATGGCGTCCGACTCCGAGTCGCCGGCGGCGGCGGCGGCGCCGGCGAAGTTACCGGCCACGCCGCTGGCGGGGTTCGTTTCGCTCCTCGCCGCGCGCCGCTTCGCGGCCGCTAAGTCGCTACTCGCCTCCCTCGTCACGCCCCGCCTGCTCGCCGTCCCCTTCGCCGACCTGGCCGCCGCCTCCCTCCCTCGCGCCGCGCCGCGGCACGCCGTCACTGCCTTCTACGACATGCTCTTCCGCGCCTACGCGGACTCGGGCGCCGCCGCTCGCGCCGCCGAGGCCTTCGAGCTAACCGTATCCCGCCTCGGGGGGCTTGACCCCCGCTCCCTCACCTCCTCCCTCCTCTCGCTCCGGCGAGCAGGCCACCTCGACACCGCCGCCGACCTCCTCAAACAGGCTGCCACTTCTTGTCCTGACTCCGTCACGCCTCTCTCGGCGTCTGTCGTCGTCGACGGATACTGCAAGTCTGGCCGCGTCGCCCACGCCCGCCAGCTGCTCGACGAAATGCCTCGACACGGCGTGAAGGTTAACGCCTTGTGCTATAACTCGCTGCTAGACGCATACACGCGCGAAAAAGATGATGATCGGGTGGCAGAGATGCTAAAGGTAATGGAAAATGAAGGCATTGAGCCAACAGTCGGGACATATACAATCCTCGTCGATGGTTTATCGGCAGCCAGAGATATCACCAAGGTTGAGGCTGTGTTTGAAGAGATGAAGAGTAAGAATCTCTCAGGGGATGTCTACTTCTATTCTTCAGTCATCAACGCATACTGCCGTGCAGGGAATGTGCGGAGGGCATCGGAGGTGTTTGATGAATGTGTTGGGAATGGCATTGAGCCAAACGAGCATACGTATGGAGCATTGATCAATGGGTTCTGCAAGATTGGGCAGATGGAGGCTGCAGAGATGTTGGTGACAGATATGCAAGTTCGAGGGGTGGGAATTAACCAAATTGTTTTCAATACAATGATTGATGGGTATTGTCGGAAAAATATGGTGGACAAGGCTCTTGAAATAAAGATGATCATGGAGAAGATGGGCATCGAGCTGGATGTGTATACATACAACACACTAGCATGTGGCCTCCGCAGGGCGAATAGAATGGATGAGGCCAAGAATCTATTGCGTATCATGATTGAGAAGGGTGTCAGGCCAAACCATGTAAGCTACACTACGTTGATCAGCATCCATTGCAATGAAGGTGACATGGTCGAGGCAAGAAGGCTGTTTCGAGAGATGGCAGGAAATGGGGCAGAACCTAGTCTGGTAACCTACAATGTTATGATGGATGGGTACATCAAGAAGGGGAGCATACGGGAGGCTGAGAGGTTCAAAAATGAGATGGAAAAGAAAGGGCTTGTTCCAGACATATACTCTTATGCAGCGTTAGTCCATGGGCACTGTGTCAATGGGAAGGTGGATGTGGCATTGAGGCTGTTTGAAGAGATGAAGCAGAGGGGGTCTAAACCCAACTTGGTGGCATATACTGCTCTGATATCCGGCCTGGCCAAGGAAGGAAGATCAGAGGAGGCATTCCAGTTGTACGACAATATGCTGGGAGATGGATTGACCCCAGATGATGCTCTGTATTCTGCACTTGTAGGGAGCCTTCACACGGATAAAAAGCAAAATGTTAAACCACGAACAAATTAA
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| Protein seq | MASDSESPAAAAAPAKLPATPLAGFVSLLAARRFAAAKSLLASLVTPRLLAVPFADLAAASLPRAAPRHAVTAFYDMLFRAYADSGAAARAAEAFELTVSRLGGLDPRSLTSSLLSLRRAGHLDTAADLLKQAATSCPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVKPRTN |
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| Function | Pentatricopeptide repeat-containing protein At2g32630 [UniProtKB/Swiss-Prot:Q8S8P6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0671200 | OsNip_07t0671200-00 | Chr07 | 28373368 | 28375043 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGTCCGACTCCGAGTCGCCGGCGGCGGCGGCGGCGCCGGCGAAGTTACCGGCCACGCCGCTGGCGGGGTTCGTTTCGCTCCTCGCCGCGCGCCGCTTCGCGGCCGCTAAGTCGCTACTCGCCTCCCTCGTCACGCCCCGCCTGCTCGCCGTCCCCTTCGCCGACCTGGCCGCCGCCTCCCTCCCTCGCGCCGCGCCGCGGCACGCCGTCACTGCCTTCTACGACATGCTCTTCCGCGCCTACGCGGACTCGGGCGCCGCCGCTCGCGCCGCCGAGGCCTTCGAGCTAACCGTATCCCGCCTCGGGGGGCTTGACCCCCGCTCCCTCACCTCCTCCCTCCTCTCGCTCCGGCGAGCAGGCCACCTCGACACCGCCGCCGACCTCCTCAAACAGGCTGCCACTTCTTGTCCTGACTCCGTCACGCCTCTCTCGGCGTCTGTCGTCGTCGACGGATACTGCAAGTCTGGCCGCGTCGCCCACGCCCGCCAGCTGCTCGACGAAATGCCTCGACACGGCGTGAAGGTTAACGCCTTGTGCTATAACTCGCTGCTAGACGCATACACGCGCGAAAAAGATGATGATCGGGTGGCAGAGATGCTAAAGGTAATGGAAAATGAAGGCATTGAGCCAACAGTCGGGACATATACAATCCTCGTCGATGGTTTATCGGCAGCCAGAGATATCACCAAGGTTGAGGCTGTGTTTGAAGAGATGAAGAGTAAGAATCTCTCAGGGGATGTCTACTTCTATTCTTCAGTCATCAACGCATACTGCCGTGCAGGGAATGTGCGGAGGGCATCGGAGGTGTTTGATGAATGTGTTGGGAATGGCATTGAGCCAAACGAGCATACGTATGGAGCATTGATCAATGGGTTCTGCAAGATTGGGCAGATGGAGGCTGCAGAGATGTTGGTGACAGATATGCAAGTTCGAGGGGTGGGAATTAACCAAATTGTTTTCAATACAATGATTGATGGGTATTGTCGGAAAAATATGGTGGACAAGGCTCTTGAAATAAAGATGATCATGGAGAAGATGGGCATCGAGCTGGATGTGTATACATACAACACACTAGCATGTGGCCTCCGCAGGGCGAATAGAATGGATGAGGCCAAGAATCTATTGCGTATCATGATTGAGAAGGGTGTCAGGCCAAACCATGTAAGCTACACTACGTTGATCAGCATCCATTGCAATGAAGGTGACATGGTCGAGGCAAGAAGGCTGTTTCGAGAGATGGCAGGAAATGGGGCAGAACCTAGTCTGGTAACCTACAATGTTATGATGGATGGGTACATCAAGAAGGGGAGCATACGGGAGGCTGAGAGGTTCAAAAATGAGATGGAAAAGAAAGGGCTTGTTCCAGACATATACTCTTATGCAGCGTTAGTCCATGGGCACTGTGTCAATGGGAAGGTGGATGTGGCATTGAGGCTGTTTGAAGAGATGAAGCAGAGGGGGTCTAAACCCAACTTGGTGGCATATACTGCTCTGATATCCGGCCTGGCCAAGGAAGGAAGATCAGAGGAGGCATTCCAGTTGTACGACAATATGCTGGGAGATGGATTGACCCCAGATGATGCTCTGTATTCTGCACTTGTAGGGAGCCTTCACACGGATAAAAAGCAAAATGTTAAACCACGAACAAATTAA
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| Protein seq | MASDSESPAAAAAPAKLPATPLAGFVSLLAARRFAAAKSLLASLVTPRLLAVPFADLAAASLPRAAPRHAVTAFYDMLFRAYADSGAAARAAEAFELTVSRLGGLDPRSLTSSLLSLRRAGHLDTAADLLKQAATSCPDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQNVKPRTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.635259 | 0.596565 | 1.182465 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0336000 | RBH | 1.540626 | 1.825303 | 0.259599 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47470 | RBH | 0.398469 | 0.406086 | 0.308065 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0671200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027260 | RBH | 0.114719 | 1.584621 | 1.421574 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027290 | RBH | 0.155151 | 0.649399 | 0.385315 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027100 | RBH | 0.0 | 1.410651 | 0.716431 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026860 | RBH | 0.085842 | 0.035620 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027120 | RBH | 0.0 | 2.085201 | 2.387624 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0459900 | RBH | 0.36709 | 0.471033 | 1.150497 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027620 | RBH | 0.058427 | 0.096858 | 0.297693 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0473500 | RBH | 0.895099 | 1.941234 | 3.6344765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026900 | RBH | 0.049199 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027340 | RBH | 0.110145 | 4.633232 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027040 | RBH | 0.0 | 1.906484 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027380 | RBH | 0.0 | 0.144159 | 0.138555 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026910 | RBH | 0.071060 | 0.792995 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027040 | RBH | 0.189352 | 0.0 | 0.642831 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026800 | RBH | 0.286985 | 0.0 | 0.947964 |
