Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0668900 | OGI:07076990 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28250047-28253655 | ||||||||
| Gene Symbol | RLCK240, OsRLCK240 | ||||||||||
| DNA seq | AAATTTCTAACAACAGGAGTCTTTCACATTATATGATCATACACTCTATGGTCTATACAGTATGTCATTGTCCGCAAAATAATTGTGTTACATGTAAAAAAAACACAAACAATCCACTGTAGCATGTAGGTCTGTACACGCATTCTGGTAAGAATTGTTTTCTGTATGTATAAAACATCCTAATTCCTGAATGATAGGTATGGCACAAACTGTGACCTAATTACAAAGAGAATAAAAATCTTTACAGGTAGAATGCAATTGACACCGATCAAAATGCATGCTCCTTATCTGCGACAAGATGGTTTCTTGCTTCAACCAGATCATGATCTTCATGTATACCTTTGGAAACAACTAAAATACAACCATGGGTACAGTCATACAGCACCTGGACCATAACAGCGCGCAACTGTACCAACAAAGAGTATCCAACCCTCAACAGAAGCAGAGAAGATGTCTGGCAAAATTGGCAGCAATCGGGGAAAGAATTGCAACAATGTCTGTTTGTATGTGCATCAAAACTGCCTGCTGCCTTTGCCTGACCCTGATCTCTGTTTCTCATGGGCATCAAGCTTGACACTGGACTTGTGATATATATCAGCTTCACTGTTATTTTGTCCATTATGCAAGGCCAGCAGTTCTGGAACATCTAGACCATCATTCCTTCCAGAGCTACTGCCACTGCCATAACCTTCACTGTGATCCTGCTCGAATTCCCCTCTAGTAGTTTCCTTCCTCCCCAAGTCTGGGAAGTTCCAGTTAAGTGAATCGGCAGCATGTTGGGCATCAGGAACACTGGTTGTTCGTCGATGTGCTTTTGCCTTTGGGGTGGATGGGCAAGTCCTCGAACTCTTTGCAGAAGGTGCATTAGGATCGTAATGATTTGAAGCTAGATAAGAAAGTGCAGTGACAATATCCGCAATGAGGGGTCGAGATGTTGCATTCTCCTGCAAGCACATAGATGCAACAGCTAAAGCCTGGTACAAACCCCTTTTGGGATAACAACCTTGCAGCGATGGATCGGCCATTTGGCAGAACTTCCTTCGGTCTCTAAACAGTGGACGAGCCTGCAAATTATAAGGATAAGACACTTCACATCATGATGAAATTGAAACAGAACATCCCCTCTACACCCAAAGGAAGGGAGATAATTTAGTACAGTTGAGCCCACACATTCTTAAAAATAAAAGGATGAACCTACCCATGCAACAAGATTTTGCTCCCCTGCAGGTTGGGTGTGATCAATGGCTTTACGTCCTGTAATGAGTTCAAGGAAGACAACGCCAAAGCTGTAAACATCAGATTTTACTGTCAACTGTCCTGTCATGGCATATTCTGGAGCACAATAGCCATATGTTCCCATAACTCTTGTTGATACGTGAGTTTTGTCACCAACTGGACCAAGTTTTGCAAGCCCAAAATCAGATAGCTTTGGGTAATAGTCTTCGCCCAGAAGAATATTTGATGATTTGAAATCTCTATATATGACTGGTGGATTTGCCTTATCATGCAGGTACTCCAAACCCTTCGCTGCACCAACAGCAATCTTCATCCTTGCATTCCAGTCAAGAGGTTTCTTGCCTGGTGGGCGATCTATTAAGAAAGTGCCCCATGAGTTATAAAATGATAGATAGCAATGTCTAAAGAAAATTAAATGTTGTCAGTAGCAAACTACAGTAAGACAGTGAAGGGTAGCTGGCAAGTTCTCTTTCAAATCAAATAGGTCAGGAATCAACTTAGCAGGTTGAGACTAAAGCACAAACACAAATCTTGTGATAGGAACCATAAGGACATAACTTGATCACTATCAATTTAATGTGCATTGACATTTCAGGAGGTGTGTTTTAGTGTCTCTGAACTTAAACATTAATGTTTCCCATTATGTCACGAAATTCACAATTCTTCTTCTGTATGTTATGTGAAGCTCAATCAACTAAGTGTTATTGATAATGTGCAAACTTTGAACTGAAACAGTAAAATCACGTAGTGAGAACTGAGAAGCTTACCATGAAGATGGTTTTCTAGTGACCCCAATAGCATATACTCATAAACTAGGAGCCGCTGGTCACCATCTGCGCAGTAGCCAATTAATCTGACCAGATTAGGATGGTGCAAGAGACTTAGCATGAGAACCTCCACGAGAAATTCTCGGTTTCCTTGTAGGCCATTTCTGTCAAGTTGCTTCACGGCAATAACCTGCTAGATGATATATGCAAAAGAAAAGGTGTCGGACACTCAGAAAAATCATGCTCTAAATTGCAGCTAATGAACAAGAGCACACAGCAGCCAATGTTAGGAATAGCAAACCTGTCCATTCTCCATCTGTCCTTTATAGACACGACCAAAGCCACCTTCACCCAGCAGGCAGTCTTTTCTGAAATTCTTGGTGGCAACAGCCAATTCTCGGAAAGTGAAAATTTTGGCTGGACCATCATTCGCAGAGCTTCCTCCTCTTCGGACAGAATCGTCCTTCTTAATGCCTGAACCACGTGATGAGTTTGATCGATCTTGACCCATCCAACATGCAAATTTTAACATATTATTCCTCAATTCAATGATCTCATGAGAGAATGATAATACTTGCATGCGCAGCAACACGGCAACTAAATTACTGTACTCGCTTCAGACTACAACAACTATGCAAAGGGTGGACTGTAATTCAAGCAAGGTCGAAGCAAGCAATTACCCACGCGAAGGAATCAGTTAGAGACAACAAGAGTAAACAACACATCAAACATTACTGCCTGGTCGCCTGAGACTGAAAGTTGCAATAATATTATTATTATAGCTGCAAGCTTCAGTTCAGATTTTATTTTCCTCTCCCTTTCACTCCACTTCTCACGAGAACAATCAATTACATTTTCTTTCCAAGAAAGTAGCTTTGCGTCCCCTTCAACCCCACTATCTCAACAAGCAACCAGACTAACATTTACAAACCTAAAGCCTTGAATTATTTACCACAATCAAATGACCAAAGCGCCAATTTGCAAGAAAGCATAATAAACAATCAACGCTATGCAAAATTGACTTCTTTTTTCTCACTGTTACCCTTTAAACCCAAACGAAGAGAGAATTCGAGCCAATATGGATCACACCAATGCGCAGCTACCGCACTGAGCCACTCGCTGCAAATTCGCAACCAGCGAAACCGATACAGAATCATACAGCTGACCGGGGCAACGCCAGCAAGCGGATTCACCAGAAGAAATCGAATCTTTCCACACCCTGCGAAGAGAAATCGGAGGGGGGCTAAGATGCGGGATTCACCTGGTGCCGCGCTCGCCGCGGGCCGCGGACCCGGCGAGAGCGCCGCCACGCTCTTGGCGTCAACCCCGCCCTTCCCCGACGACCCCGAGCACGGGAAGCAGCTCATCTCTCTCCCGGTTCTTGAGCTTGAGGCGCGCGCACAAACTGAAAAAATGCCAGCCGATCCGCCGATAAATTCCAGCTCGAAGCTAAGGCTCGATCTTTATGGCTTGCGCACTGATCTGTGCCGCGAAAGCAGCTAAATTCAGGGAGATGTTGGGGGTGGGGGTAGGGGAAGGAAGTCAAGGCCTCGAGGGCACAAGGCTCAAGATGGCATAAACAAAAGGGCAACCAAGATGCTGGTGT
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| CDS seq | ATGAGCTGCTTCCCGTGCTCGGGGTCGTCGGGGAAGGGCGGGGTTGACGCCAAGAGCGTGGCGGCGCTCTCGCCGGGTCCGCGGCCCGCGGCGAGCGCGGCACCAGATCGATCAAACTCATCACGTGGTTCAGGCATTAAGAAGGACGATTCTGTCCGAAGAGGAGGAAGCTCTGCGAATGATGGTCCAGCCAAAATTTTCACTTTCCGAGAATTGGCTGTTGCCACCAAGAATTTCAGAAAAGACTGCCTGCTGGGTGAAGGTGGCTTTGGTCGTGTCTATAAAGGACAGATGGAGAATGGACAGGTTATTGCCGTGAAGCAACTTGACAGAAATGGCCTACAAGGAAACCGAGAATTTCTCGTGGAGGTTCTCATGCTAAGTCTCTTGCACCATCCTAATCTGGTCAGATTAATTGGCTACTGCGCAGATGGTGACCAGCGGCTCCTAGTTTATGAGTATATGCTATTGGGGTCACTAGAAAACCATCTTCATGATCGCCCACCAGGCAAGAAACCTCTTGACTGGAATGCAAGGATGAAGATTGCTGTTGGTGCAGCGAAGGGTTTGGAGTACCTGCATGATAAGGCAAATCCACCAGTCATATATAGAGATTTCAAATCATCAAATATTCTTCTGGGCGAAGACTATTACCCAAAGCTATCTGATTTTGGGCTTGCAAAACTTGGTCCAGTTGGTGACAAAACTCACGTATCAACAAGAGTTATGGGAACATATGGCTATTGTGCTCCAGAATATGCCATGACAGGACAGTTGACAGTAAAATCTGATGTTTACAGCTTTGGCGTTGTCTTCCTTGAACTCATTACAGGACGTAAAGCCATTGATCACACCCAACCTGCAGGGGAGCAAAATCTTGTTGCATGGGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTGTTGCATCTATGTGCTTGCAGGAGAATGCAACATCTCGACCCCTCATTGCGGATATTGTCACTGCACTTTCTTATCTAGCTTCAAATCATTACGATCCTAATGCACCTTCTGCAAAGAGTTCGAGGACTTGCCCATCCACCCCAAAGGCAAAAGCACATCGACGAACAACCAGTGTTCCTGATGCCCAACATGCTGCCGATTCACTTAACTGGAACTTCCCAGACTTGGGGAGGAAGGAAACTACTAGAGGGGAATTCGAGCAGGATCACAGTGAAGGTTATGGCAGTGGCAGTAGCTCTGGAAGGAATGATGGTCTAGATGTTCCAGAACTGCTGGCCTTGCATAATGGACAAAATAACAGTGAAGCTGATATATATCACAAGTCCAGTGTCAAGCTTGATGCCCATGAGAAACAGAGATCAGGGTCAGGCAAAGGCAGCAGGCAGTTTTGA
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| Protein seq | MSCFPCSGSSGKGGVDAKSVAALSPGPRPAASAAPDRSNSSRGSGIKKDDSVRRGGSSANDGPAKIFTFRELAVATKNFRKDCLLGEGGFGRVYKGQMENGQVIAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVRLIGYCADGDQRLLVYEYMLLGSLENHLHDRPPGKKPLDWNARMKIAVGAAKGLEYLHDKANPPVIYRDFKSSNILLGEDYYPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDHTQPAGEQNLVAWARPLFRDRRKFCQMADPSLQGCYPKRGLYQALAVASMCLQENATSRPLIADIVTALSYLASNHYDPNAPSAKSSRTCPSTPKAKAHRRTTSVPDAQHAADSLNWNFPDLGRKETTRGEFEQDHSEGYGSGSSSGRNDGLDVPELLALHNGQNNSEADIYHKSSVKLDAHEKQRSGSGKGSRQF |
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| Function | Receptor-like cytoplasmic kinase 185 [UniProtKB/Swiss-Prot:Q6I5Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0668900 | OsNip_07t0668900-01 | Chr07 | 28250047 | 28253655 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGCTGCTTCCCGTGCTCGGGGTCGTCGGGGAAGGGCGGGGTTGACGCCAAGAGCGTGGCGGCGCTCTCGCCGGGTCCGCGGCCCGCGGCGAGCGCGGCACCAGATCGATCAAACTCATCACGTGGTTCAGGCATTAAGAAGGACGATTCTGTCCGAAGAGGAGGAAGCTCTGCGAATGATGGTCCAGCCAAAATTTTCACTTTCCGAGAATTGGCTGTTGCCACCAAGAATTTCAGAAAAGACTGCCTGCTGGGTGAAGGTGGCTTTGGTCGTGTCTATAAAGGACAGATGGAGAATGGACAGGTTATTGCCGTGAAGCAACTTGACAGAAATGGCCTACAAGGAAACCGAGAATTTCTCGTGGAGGTTCTCATGCTAAGTCTCTTGCACCATCCTAATCTGGTCAGATTAATTGGCTACTGCGCAGATGGTGACCAGCGGCTCCTAGTTTATGAGTATATGCTATTGGGGTCACTAGAAAACCATCTTCATGATCGCCCACCAGGCAAGAAACCTCTTGACTGGAATGCAAGGATGAAGATTGCTGTTGGTGCAGCGAAGGGTTTGGAGTACCTGCATGATAAGGCAAATCCACCAGTCATATATAGAGATTTCAAATCATCAAATATTCTTCTGGGCGAAGACTATTACCCAAAGCTATCTGATTTTGGGCTTGCAAAACTTGGTCCAGTTGGTGACAAAACTCACGTATCAACAAGAGTTATGGGAACATATGGCTATTGTGCTCCAGAATATGCCATGACAGGACAGTTGACAGTAAAATCTGATGTTTACAGCTTTGGCGTTGTCTTCCTTGAACTCATTACAGGACGTAAAGCCATTGATCACACCCAACCTGCAGGGGAGCAAAATCTTGTTGCATGGGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTGTTGCATCTATGTGCTTGCAGGAGAATGCAACATCTCGACCCCTCATTGCGGATATTGTCACTGCACTTTCTTATCTAGCTTCAAATCATTACGATCCTAATGCACCTTCTGCAAAGAGTTCGAGGACTTGCCCATCCACCCCAAAGGCAAAAGCACATCGACGAACAACCAGTGTTCCTGATGCCCAACATGCTGCCGATTCACTTAACTGGAACTTCCCAGACTTGGGGAGGAAGGAAACTACTAGAGGGGAATTCGAGCAGGATCACAGTGAAGGTTATGGCAGTGGCAGTAGCTCTGGAAGGAATGATGGTCTAGATGTTCCAGAACTGCTGGCCTTGCATAATGGACAAAATAACAGTGAAGCTGATATATATCACAAGTCCAGTGTCAAGCTTGATGCCCATGAGAAACAGAGATCAGGGTCAGGCAAAGGCAGCAGGCAGTTTTGA
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| Protein seq | MSCFPCSGSSGKGGVDAKSVAALSPGPRPAASAAPDRSNSSRGSGIKKDDSVRRGGSSANDGPAKIFTFRELAVATKNFRKDCLLGEGGFGRVYKGQMENGQVIAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVRLIGYCADGDQRLLVYEYMLLGSLENHLHDRPPGKKPLDWNARMKIAVGAAKGLEYLHDKANPPVIYRDFKSSNILLGEDYYPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDHTQPAGEQNLVAWARPLFRDRRKFCQMADPSLQGCYPKRGLYQALAVASMCLQENATSRPLIADIVTALSYLASNHYDPNAPSAKSSRTCPSTPKAKAHRRTTSVPDAQHAADSLNWNFPDLGRKETTRGEFEQDHSEGYGSGSSSGRNDGLDVPELLALHNGQNNSEADIYHKSSVKLDAHEKQRSGSGKGSRQF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0668900 | OsNip_07t0668900-02 | Chr07 | 28250248 | 28253630 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGCTGCTTCCCGTGCTCGGGGTCGTCGGGGAAGGGCGGGGTTGACGCCAAGAGCGTGGCGGCGCTCTCGCCGGGTCCGCGGCCCGCGGCGAGCGCGGCACCAGATCGATCAAACTCATCACGTGGTTCAGGCATTAAGAAGGACGATTCTGTCCGAAGAGGAGGAAGCTCTGCGAATGATGGTCCAGCCAAAATTTTCACTTTCCGAGAATTGGCTGTTGCCACCAAGAATTTCAGAAAAGACTGCCTGCTGGGTGAAGGTGGCTTTGGTCGTGTCTATAAAGGACAGATGGAGAATGGACAGGTTATTGCCGTGAAGCAACTTGACAGAAATGGCCTACAAGGAAACCGAGAATTTCTCGTGGAGGTTCTCATGCTAAGTCTCTTGCACCATCCTAATCTGGTCAGATTAATTGGCTACTGCGCAGATGGTGACCAGCGGCTCCTAGTTTATGAGTATATGCTATTGGGGTCACTAGAAAACCATCTTCATGATCGCCCACCAGGCAAGAAACCTCTTGACTGGAATGCAAGGATGAAGATTGCTGTTGGTGCAGCGAAGGGTTTGGAGTACCTGCATGATAAGGCAAATCCACCAGTCATATATAGAGATTTCAAATCATCAAATATTCTTCTGGGCGAAGACTATTACCCAAAGCTATCTGATTTTGGGCTTGCAAAACTTGGTCCAGTTGGTGACAAAACTCACGTATCAACAAGAGTTATGGGAACATATGGCTATTGTGCTCCAGAATATGCCATGACAGGACAGTTGACAGTAAAATCTGATGTTTACAGCTTTGGCGTTGTCTTCCTTGAACTCATTACAGGACGTAAAGCCATTGATCACACCCAACCTGCAGGGGAGCAAAATCTTGTTGCATGGGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTGTTGCATCTATGTGCTTGCAGGAGAATGCAACATCTCGACCCCTCATTGCGGATATTGTCACTGCACTTTCTTATCTAGCTTCAAATCATTACGATCCTAATGCACCTTCTGCAAAGAGTTCGAGGACTTGCCCATCCACCCCAAAGGCAAAAGCACATCGACGAACAACCAGTGTTCCTGATGCCCAACATGCTGCCGATTCACTTAACTGGAACTTCCCAGACTTGGGGAGGAAGGAAACTACTAGAGGGGAATTCGAGCAGGATCACAGTGAAGGTTATGGCAGTGGCAGTAGCTCTGGAAGGAATGATGGTCTAGATGTTCCAGAACTGCTGGCCTTGCATAATGGACAAAATAACAGTGAAGCTGATATATATCACAAGTCCAGTGTCAAGCTTGATGCCCATGAGAAACAGAGATCAGGGTCAGGCAAAGGCAGCAGGCAGTTTTGA
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| Protein seq | MSCFPCSGSSGKGGVDAKSVAALSPGPRPAASAAPDRSNSSRGSGIKKDDSVRRGGSSANDGPAKIFTFRELAVATKNFRKDCLLGEGGFGRVYKGQMENGQVIAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVRLIGYCADGDQRLLVYEYMLLGSLENHLHDRPPGKKPLDWNARMKIAVGAAKGLEYLHDKANPPVIYRDFKSSNILLGEDYYPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDHTQPAGEQNLVAWARPLFRDRRKFCQMADPSLQGCYPKRGLYQALAVASMCLQENATSRPLIADIVTALSYLASNHYDPNAPSAKSSRTCPSTPKAKAHRRTTSVPDAQHAADSLNWNFPDLGRKETTRGEFEQDHSEGYGSGSSSGRNDGLDVPELLALHNGQNNSEADIYHKSSVKLDAHEKQRSGSGKGSRQF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.485500 | 0.228124 | 1.440257 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47270 | RBH | 0.326737 | 0.152320 | 0.368062 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0668900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027070 | RBH | 0.0 | 9.513397 | 2.653001 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027100 | RBH | 0.117000 | 0.979424 | 0.871698 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026920 | RBH | 0.893917 | 11.215647 | 2.621201 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026670 | RBH | 0.081186 | 0.354875 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026930 | RBH | 6.396004 | 2.289460 | 2.482514 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0458100 | RBH | 4.7645895 | 8.548216 | 3.856567 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027430 | RBH | 0.084962 | 0.999666 | 0.546351 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0471600 | RBH | 6.5829115 | 5.79615 | 7.28609 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026710 | RBH | 0.065707 | 0.104149 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027150 | RBH | 0.654398 | 1.355946 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026850 | RBH | 3.218209 | 5.657356 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027190 | RBH | 0.481962 | 0.409283 | 0.681403 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026730 | RBH | 0.053424 | 3.876904 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026850 | RBH | 0.928137 | 2.430132 | 1.082795 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026610 | RBH | 0.0 | 16.785175 | 1.405195 |
