Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0668500 | OGI:07076930 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28228499-28231984 | ||||||||
| Gene Symbol | Gnk2RLK-6 | ||||||||||
| DNA seq | ATGCTATCTAATTTAGTTTGATAATATATACACTCGATCGATCAGCTTAGCTATAGCTGTAGCTGCACAATATGGTTGGCCACCTCCTGCTGCTTTTGGTAGTGATCATCATCTGCTACGCACCGACATCGTCGACGGCAGCCGGCGGCGAGGTCCCGTTCTACGAGGATTGCCCCAGCACGGCGGACGGGACGTACGCGCCGAACAGCACGTACCAGTCCAACCTCGCCGCGCTCGCCGCGGAGCTCATCGAGAACTCGACGGAGTACGGCTCGGCCGCCGGGTCGTTCGGGGCGGCGCCGGACGCCGTCTACGGCGTCGCGCTCTGCCGCGGCGACTCCAAGGGCCCCCTCTGCGCCGGCTACCTCAGGGAAGCGTTCGACGCCGCCATGAACCGGACGACGAGCAGCAGGCCGCTCTGCGAGCTCCGCAGGAACGTCACGCTCTTCTACGACCGCTTCCAGCTCCGGTTCGCCGACGCGGACTTCGTCTCCGGCTACGGCAACGAGCCGGAGTGGCCGCTGAACAACACCAACGTGGTGGACGCCCCCGTCGCCGGCAGGTTCCGGGAGCACGTCGCGGCGCTGCTGAACGCGACGGCGCGCGACGCGGCGGCGCAGCCGGACAGGTACGGCACCGGCGACTCGTGGTTCCAGGAGGGAGGGTCGATGGTGTACGCGCTGGTGCAGTGCACCCGCGACATGGATCCCGGCCGCTGCGGCGCCTGCCTGCAGCGCATCATCTCGGAGATGCCGCGGATGCTGGACGCGAGCCAGATTGGCGGGAGGGTTCTCGGGGTTCGCTGCCTCCTCCGCTACGAGATGGCGTCGAATTCCTTCTTCCACATAGACAACAGGACCCTGCATCTTCAGAAGCAGCCTACCCGTGCGTGTTCTCCTACTTGTCCATGACCAGAAATGCAGAATATAACAGCAATTTTTATTTTATTTTTTTCAAATGTTCACCATATCCTGATTAAATTGTTTCGCTTGCTTGGTTGCTGCATGATTTTGGTTGTGGTGCAGAACAATCGGGTTCTAGCTCGGGAGGTAAATGTAAGATTTTTCTGAACTTAATTGCCTGAAGCTTCACTCTCACTCGCTGAAGAAACCATACTAATTGGCGACCATCTGGGTTGCATGCTGTCATGTGCAGCCAAGACATGGCCGATCATCGTTGCTGTTGCCGGTGTAGCCGTATGCATTTCCTGCTTCTTTCTCTTCAGAGAGCTGAAGAGAAGGAGAAGAAGAGGTAGCATATAGTACAATTTTTGTTCATTGCAACATTGCCAAAAAATACTTGTTATTCATATGTTTTCTGGTGTAAAACAGTAGTAACATTTATTTCACTGGATATCTATTTCAGCACGAGTAAGATCAGAGCTGCGAAGGCTGTCTATGGCAGTACAGAATGTAATAACTCTCTGGAGGTTAGAAGAGGGCAACTCAGGCTTTAAACTGTATGATTTCTCTGACATAAAAGATGCGACTAATAATTTCTCAAGTGAAAGTTTGCTTGGAAAAGGAGGTTTTGGATCTGTCTACAAAGTAAGTTCAGACTCCAGAGTCACACTCTATTACTAGTAGCAAGCAAGTGTTTTTTTTTAAGATAGCTAACCTGAACACTGTCTATTTGTTCAAAAGAAAAGAATCAGTTTTTACCAACATCTTTTTGTTCCTAATGTCGAGCAACTATAAATCCAGGGGCAAATGCCTAGTGGACCTGAAGTAGCAGCAAAAAGGCTTGCAGCATGCTCTGGACAGGGTCTACTGGAATTCAAGAACGAAATACAGCTTGTAGCAAGGCTTCAGCACAGGAATTTGGTCAGGCTACTGGGATGTTGCATCGAAGGGGATCAGGAGAAGATACTCGTGTACGAGTACATGCCAAACAAAAGCCTAGATGTGTTCATCTTCGGTACACTTCCAACAAAATTCAACCCCCACTCTTATCAATTTGCACACTGCATATATGCTTAATGTGTAATCCCTTTGTTTCTAAATATTTGATGACGTTGACTTTTTAAAATATGTTTGACCATTCGCCTTATTAAAAAAAAATTAAGTAATTATTAATTATTTTTCTATCATTTGATTCATTGTTAAATATAGTTTCATGTATACATATAGTTTTACATATTTCACAAAATTTTTTAAATAAAACGAACGGTCAAGCATGTGCTAAAAAGTCAACGATGTCAAACATTTAGAAACGGAGAGAGTAGAGGAGGTATAACATTTTCTATTGTAAAACTTGGCGTCTGCCGCTACTAGATACCTTGAGGTATAAAAACTTAGTATAAAATTTCTCTATAGTTTCAGACTGATGAAATTAATTTGCAGATAATGTCAAACGAGAGTTGCTAGACTGGCCTAAACGTCTCCACATAATCCATGGGATATCTCAAGGGCTGCTCTATCTTCACGAGCACTCGACAGTCTGTGTCGTCCACAGGGACCTGAAAGCGAGCAACGTTCTGTTGGATGCCGAGATGAACGCCAAGATTTCAGATTTCGGCATCGCTAGGATTTTCGGCTCAAATGCAGCTCAATCCAGTACTACCAGAATTGTTGGAACCATGTAAGAATCAATCTTAATTTACTAGTACTAATTAATCAGTAGTACGTACTGATGCTATGTTTCATTCATGCACAACACCTGATGACCTGAATTGAGAGTACTAGTTTTTTTTTTTTTTGGAAAAAGTATTGAATTGAGAGTGCTAGTTAATTTCACTGGTTTTGTAATCTGAAGATTTCTGATTAACCATTTGTTTTCACTAATTTTAGTGGATACATAGCTCCGGAGTACGCATTAGATGGCGTTTGCTCGAGCAAAGCGGATGTTTTCAGCTTCGGCGTGCTCATACTTGAGATCATCAGTGGCAAAAGAACTGGAGGCTCATATCGATACAACGACGGAAAGCTATACTGTCTCATCGCATATGTCAGTCAATCTATCGATCAATTCCTCTTCTCTAATTTAATTAATTGTCTGAATCCGATCATCTGAAGAATCTCCTTTTGACAGGCTTGGCTGCTGTGGAAAGATGGCAGATGGCACGAGCTGATCGATGAATGTTTGGGAGACAGGTATCATGCATCGATCAGGACGTGCATGCAGGTGGCGCTTCTGTGCGTTCAGGAGGACGCAGAGGATCGGAAAGCCATGGACGAGGTGGTGAAGATGCTGGGCAACGAGCAGGCGGCGAGCCAGCTGCCGGAGCCGAAGCAGTCGGCCTACTTCAACGTGCGCCCCAGCGGCGGCGGCGGCGATGCGCCGCCGTCGGCGTGCAACATCAGCATTAGCATGATCACGCCGAGATAAATGTGTTTACAGTGTAGCTGTAACCAAAAATTGTAAATACCCTTGTTCTGGAAATGTTTTAAATTGTCTTTTTTCTTTTTGTGAACAAGTGGTTTTCAGAAATGCTACCTCTGAAAAAATTTGAGCATGAAGAGGAGGAAGGTTTTATTATATATTTCT
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| CDS seq | ATGGTTGGCCACCTCCTGCTGCTTTTGGTAGTGATCATCATCTGCTACGCACCGACATCGTCGACGGCAGCCGGCGGCGAGGTCCCGTTCTACGAGGATTGCCCCAGCACGGCGGACGGGACGTACGCGCCGAACAGCACGTACCAGTCCAACCTCGCCGCGCTCGCCGCGGAGCTCATCGAGAACTCGACGGAGTACGGCTCGGCCGCCGGGTCGTTCGGGGCGGCGCCGGACGCCGTCTACGGCGTCGCGCTCTGCCGCGGCGACTCCAAGGGCCCCCTCTGCGCCGGCTACCTCAGGGAAGCGTTCGACGCCGCCATGAACCGGACGACGAGCAGCAGGCCGCTCTGCGAGCTCCGCAGGAACGTCACGCTCTTCTACGACCGCTTCCAGCTCCGGTTCGCCGACGCGGACTTCGTCTCCGGCTACGGCAACGAGCCGGAGTGGCCGCTGAACAACACCAACGTGGTGGACGCCCCCGTCGCCGGCAGGTTCCGGGAGCACGTCGCGGCGCTGCTGAACGCGACGGCGCGCGACGCGGCGGCGCAGCCGGACAGGTACGGCACCGGCGACTCGTGGTTCCAGGAGGGAGGGTCGATGGTGTACGCGCTGGTGCAGTGCACCCGCGACATGGATCCCGGCCGCTGCGGCGCCTGCCTGCAGCGCATCATCTCGGAGATGCCGCGGATGCTGGACGCGAGCCAGATTGGCGGGAGGGTTCTCGGGGTTCGCTGCCTCCTCCGCTACGAGATGGCGTCGAATTCCTTCTTCCACATAGACAACAGGACCCTGCATCTTCAGAAGCAGCCTACCCCTTCACTCTCACTCGCTGAAGAAACCATACTAATTGGCGACCATCTGGGTTGCATGCTGTCATGTGCAGCCAAGACATGGCCGATCATCGTTGCTGTTGCCGGTGTAGCCGTATGCATTTCCTGCTTCTTTCTCTTCAGAGAGCTGAAGAGAAGGAGAAGAAGAGTAAGATCAGAGCTGCGAAGGCTGTCTATGGCAGTACAGAATGTAATAACTCTCTGGAGGTTAGAAGAGGGCAACTCAGGCTTTAAACTGTATGATTTCTCTGACATAAAAGATGCGACTAATAATTTCTCAAGTGAAAGTTTGCTTGGAAAAGGAGGTTTTGGATCTGTCTACAAAGGGCAAATGCCTAGTGGACCTGAAGTAGCAGCAAAAAGGCTTGCAGCATGCTCTGGACAGGGTCTACTGGAATTCAAGAACGAAATACAGCTTGTAGCAAGGCTTCAGCACAGGAATTTGGTCAGGCTACTGGGATGTTGCATCGAAGGGGATCAGGAGAAGATACTCGTGTACGAGTACATGCCAAACAAAAGCCTAGATGTGTTCATCTTCGAGAGTAGAGGAGGTATAACATTTTCTATTGTAAAACTTGGCGTCTGCCGCTACTAG
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| Protein seq | MVGHLLLLLVVIIICYAPTSSTAAGGEVPFYEDCPSTADGTYAPNSTYQSNLAALAAELIENSTEYGSAAGSFGAAPDAVYGVALCRGDSKGPLCAGYLREAFDAAMNRTTSSRPLCELRRNVTLFYDRFQLRFADADFVSGYGNEPEWPLNNTNVVDAPVAGRFREHVAALLNATARDAAAQPDRYGTGDSWFQEGGSMVYALVQCTRDMDPGRCGACLQRIISEMPRMLDASQIGGRVLGVRCLLRYEMASNSFFHIDNRTLHLQKQPTPSLSLAEETILIGDHLGCMLSCAAKTWPIIVAVAGVAVCISCFFLFRELKRRRRRVRSELRRLSMAVQNVITLWRLEEGNSGFKLYDFSDIKDATNNFSSESLLGKGGFGSVYKGQMPSGPEVAAKRLAACSGQGLLEFKNEIQLVARLQHRNLVRLLGCCIEGDQEKILVYEYMPNKSLDVFIFESRGGITFSIVKLGVCRY |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0668500 | OsNip_07t0668500-00 | Chr07 | 28228570 | 28231389 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTTGGCCACCTCCTGCTGCTTTTGGTAGTGATCATCATCTGCTACGCACCGACATCGTCGACGGCAGCCGGCGGCGAGGTCCCGTTCTACGAGGATTGCCCCAGCACGGCGGACGGGACGTACGCGCCGAACAGCACGTACCAGTCCAACCTCGCCGCGCTCGCCGCGGAGCTCATCGAGAACTCGACGGAGTACGGCTCGGCCGCCGGGTCGTTCGGGGCGGCGCCGGACGCCGTCTACGGCGTCGCGCTCTGCCGCGGCGACTCCAAGGGCCCCCTCTGCGCCGGCTACCTCAGGGAAGCGTTCGACGCCGCCATGAACCGGACGACGAGCAGCAGGCCGCTCTGCGAGCTCCGCAGGAACGTCACGCTCTTCTACGACCGCTTCCAGCTCCGGTTCGCCGACGCGGACTTCGTCTCCGGCTACGGCAACGAGCCGGAGTGGCCGCTGAACAACACCAACGTGGTGGACGCCCCCGTCGCCGGCAGGTTCCGGGAGCACGTCGCGGCGCTGCTGAACGCGACGGCGCGCGACGCGGCGGCGCAGCCGGACAGGTACGGCACCGGCGACTCGTGGTTCCAGGAGGGAGGGTCGATGGTGTACGCGCTGGTGCAGTGCACCCGCGACATGGATCCCGGCCGCTGCGGCGCCTGCCTGCAGCGCATCATCTCGGAGATGCCGCGGATGCTGGACGCGAGCCAGATTGGCGGGAGGGTTCTCGGGGTTCGCTGCCTCCTCCGCTACGAGATGGCGTCGAATTCCTTCTTCCACATAGACAACAGGACCCTGCATCTTCAGAAGCAGCCTACCCCTTCACTCTCACTCGCTGAAGAAACCATACTAATTGGCGACCATCTGGGTTGCATGCTGTCATGTGCAGCCAAGACATGGCCGATCATCGTTGCTGTTGCCGGTGTAGCCGTATGCATTTCCTGCTTCTTTCTCTTCAGAGAGCTGAAGAGAAGGAGAAGAAGAGTAAGATCAGAGCTGCGAAGGCTGTCTATGGCAGTACAGAATGTAATAACTCTCTGGAGGTTAGAAGAGGGCAACTCAGGCTTTAAACTGTATGATTTCTCTGACATAAAAGATGCGACTAATAATTTCTCAAGTGAAAGTTTGCTTGGAAAAGGAGGTTTTGGATCTGTCTACAAAGGGCAAATGCCTAGTGGACCTGAAGTAGCAGCAAAAAGGCTTGCAGCATGCTCTGGACAGGGTCTACTGGAATTCAAGAACGAAATACAGCTTGTAGCAAGGCTTCAGCACAGGAATTTGGTCAGGCTACTGGGATGTTGCATCGAAGGGGATCAGGAGAAGATACTCGTGTACGAGTACATGCCAAACAAAAGCCTAGATGTGTTCATCTTCGAGAGTAGAGGAGGTATAACATTTTCTATTGTAAAACTTGGCGTCTGCCGCTACTAG
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| Protein seq | MVGHLLLLLVVIIICYAPTSSTAAGGEVPFYEDCPSTADGTYAPNSTYQSNLAALAAELIENSTEYGSAAGSFGAAPDAVYGVALCRGDSKGPLCAGYLREAFDAAMNRTTSSRPLCELRRNVTLFYDRFQLRFADADFVSGYGNEPEWPLNNTNVVDAPVAGRFREHVAALLNATARDAAAQPDRYGTGDSWFQEGGSMVYALVQCTRDMDPGRCGACLQRIISEMPRMLDASQIGGRVLGVRCLLRYEMASNSFFHIDNRTLHLQKQPTPSLSLAEETILIGDHLGCMLSCAAKTWPIIVAVAGVAVCISCFFLFRELKRRRRRVRSELRRLSMAVQNVITLWRLEEGNSGFKLYDFSDIKDATNNFSSESLLGKGGFGSVYKGQMPSGPEVAAKRLAACSGQGLLEFKNEIQLVARLQHRNLVRLLGCCIEGDQEKILVYEYMPNKSLDVFIFESRGGITFSIVKLGVCRY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0668500 | OsNip_07t0668500-01 | Chr07 | 28228499 | 28231984 | + | IsoSeq | ||
| CDS seq | ATGTTTGGGAGACAGGTATCATGCATCGATCAGGACGTGCATGCAGGTGGCGCTTCTGTGCGTTCAGGAGGACGCAGAGGATCGGAAAGCCATGGACGAGGTGGTGAAGATGCTGGGCAACGAGCAGGCGGCGAGCCAGCTGCCGGAGCCGAAGCAGTCGGCCTACTTCAACGTGCGCCCCAGCGGCGGCGGCGGCGATGCGCCGCCGTCGGCGTGCAACATCAG
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| Protein seq | MFGRQVSCIDQDVHAGGASVRSGGRRGSESHGRGGEDAGQRAGGEPAAGAEAVGLLQRAPQRRRRRCAAVGVQHQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 28229749 | 28229870 | + | OsNip_07t0668500-01 | OsNip_07t0668500-00,OsNip_07t0668500-01 | All |
| A3 | Chr07 | 28230415 | 28230841 | + | OsNip_07t0668500-00 | OsNip_07t0668500-00,OsNip_07t0668500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47230 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0668500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027040 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027070 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026890 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026900 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0457700 | RBH | 0.0069095 | 0.228773 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027400 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0471100 | RBH | 0.02662 | 0.775308 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026680 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026820 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027160 | RBH | 0.0 | 0.122049 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026700 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026580 | RBH | 0.0 | 1.810890 | 0.0 |
