Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0647600 | OGI:06027190 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:27043501-27046097 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTGAACTAAAATAATAAGTGATATCTCTTCCTTGATCAAGAAACTCAATTTGAGGGGTTTTTTATATACCGGTAAATATTCGCTACCGTATTCGTTCCGTCTCGTATTCGCTCCGTATCTGTATTCGATAATATTCGATTTCATTTCCGTATCCGAGTTTTCGATTCCGATTCCGAAAAAAATATGAAAACGAATATGTTAAAGCTAGTTTCCGTCCGTTTCCGATCCGTTTCAATCCCTAGCTTCAGCTAATACCGGAGAGATTGCCCACCTGGAACAAAAAGAGAAGGTGAAATGCGACACTGGATTAGCATCATTTTGACAAAGAAAAATACTGCAGCTCAACTCAAAACAAATAACTGAAACTACAAATTATCAAGGGACAGTATTTCCGTATTATGCTAGATATCACTCTAGGGGCAAGAAATGCCAAAAGGAGCAAGAGTTTAATCTAAAATTCTCAAAGACAAGATCATAGTCAAGTTATCGATGAAAAACAGTCAACTTTATTAGTAATTGGTAATGGGGACATGGTGGTTCTGATCTCTATTTATATGCTTTAATTACCCTCAATTACTAACTTAGCAAGTACTCATGGGTGGCTAGCAGCCTAACATGCTAGTGCACATATACTATTTAAGACTAAGTATAGCATGAAAATCTTAAGATAAGTTATCCAAGAGTAGTGAAGTAGAAAGGTTAGTATTTGCATCAAATGCTTTCCTTTACTGTCCCACCCCCTCATCATTCTTAGAATGAAGTGAGCTGCAATCATGAAATTTATGAGGGATTTGTGGATCGCGTAACATACCGTTGAGCATTTGGACTATGTAGTCCCTCTTATAGATTTCTGGGAGTGCTAAAAACATCTCCATTTGGTTTGGTTCCTTTGCGAAAATACTTGCTGCGAAGACCACCTCGCTTCCAGTAAGGCCAAGCTTTTGAATTTCAGCTATAGCTGTCACTTTGGCCTTTTGTTGGGGTTCCTCGCACATCTTCTTCTCTTGTGTATGATCGGTACCACATTCCATCACTGCTGCTACCATGCTTCCATGGTGAGTGATATTCTGAAAACGATCATGTGCGTCTTTGAACCGTTCGATGGCTGATGCTGCGCTGCTGACACTCTGCACAGCACCCTGGAAGTGATCATGTGCATCCCTGAACATCTCCATTGCCGTGGCCATCGCATTGGCATGCTGAACAACATTTTGGAAGTGATTGTGCACATCCTTGAACAACTCCATTGCTGTCACCATGGTGCTGACATGTTGAATGGAACTCTGAAAGTGGCTATGCACATCCTTAAGCATCCTTGGAGAAGGAAAGTTTGATTCAGTCCTACTCCTTTTCGTGCCATTACTATGTTTCTTTTGCCTCTTACAGCTTGATGCCACATCCAAGGAGCGACCAGATGGCCCTGCGGATTCCCTATCCTTGTCCCCATCCTCATCTCCGACCTCGTCTGTGTTTTCATTCTCCATGTCAGCAACCACTTCATCGGACAATTCCTCCTCCTCTCTGCCTGTTCTGTCCTTGCCATATATTACATCAAATGTATCAAAATATGGAAATGGGATACCATACAAACTCTTGGCTCTAGGATGATCCTGCAGAAAATAAACAAGTCGTAACAAAAACACATTATGATAAAAACAAATGTACAAAAATACTTAGAATGGCTTACTTTGCAATGAGCATCATATAACTCTTTTTCACACTGAATCATCTTCCGCATGCCGTCCCACGAGAACCTGGGCAACGCTAACATATCTTTGATCGCATAATACTTCCTCTTCAGCACTTTTAACCGAGAATCGACATGAGGACTGGATCTAATACCACGGCCTGGCAGCCTTTGCGCAAGAATGTTCTCTATCCCTTGAGAATAACAGTTCTTGAATCCCCCTCCTTCGACCTTAAATCTAGGATCAAGAGAAACCTCGCACAATGCTTTGACAAGCTCCTCATCTTCATCGGCTGTCCATTTCCTTTTGTTCCTGCCTCTGCCACGCACAACTTTGGAGCACTGAGTTTGACTCATCCCTAGAACAAAATCATAATCAGCTTAGGGTGCATATAAAAAGGAGTTGCTTATTAACATATAATAATTAATATTATCTGAAAAGAATTGAAAAATAGATTAACATGATTTTTTTTAATAAACACATTATTTAGTAGTTCGGGAAGTTTGCGCGCGAAAAACAAGCGAACAGAGGTTGGTAACTTTGAACATTAGAACACAGCCTTACATGTACAGAACAGTTCATACAAGCTAGGGTTTTACAACAACGTAGTATATCACTCCATTATCCATGTCCATAGGAGGAGTTCGACGGCTAGCCGATGAGAGAAGAAGTCATCGAGGCGGCGGCAGTACTGGAGGCGTGTTCGTCGGAGAGGGCGAGGCGAACGGCGGGGGAGATGTCAAAGCCAGCCGCTGCGGCCATCGGCGAGGGGAGAGGAGGAGGAGGAGGAAGGGAATAATACCTCACGTCACGAGAGGCAGCGGCGGCGGCGGCGGCGGCCGGAGAGAGGCGGCTCCGGGACGGACGGCGGGAGCAAAAGCGGCGGAGGGGAGATGGGATTGGGATTT
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| CDS seq | ATGAGTCAAACTCAGTGCTCCAAAGTTGTGCGTGGCAGAGGCAGGAACAAAAGGAAATGGACAGCCGATGAAGATGAGGAGCTTGTCAAAGCATTGTGCGAGGTTTCTCTTGATCCTAGATTTAAGGTCGAAGGAGGGGGATTCAAGAACTGTTATTCTCAAGGGATAGAGAACATTCTTGCGCAAAGGCTGCCAGGCCGTGGTATTAGATCCAGTCCTCATGTCGATTCTCGGTTAAAAGTGCTGAAGAGGAAGTATTATGCGATCAAAGATATGTTAGCGTTGCCCAGGTTCTCGTGGGACGGCATGCGGAAGATGATTCAGTGTGAAAAAGAGTTATATGATGCTCATTGCAAAGATCATCCTAGAGCCAAGAGTTTGTATGGTATCCCATTTCCATATTTTGATACATTTGATGTAATATATGGCAAGGACAGAACAGGCAGAGAGGAGGAGGAATTGTCAGCACCATGGTGA
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| Protein seq | MSQTQCSKVVRGRGRNKRKWTADEDEELVKALCEVSLDPRFKVEGGGFKNCYSQGIENILAQRLPGRGIRSSPHVDSRLKVLKRKYYAIKDMLALPRFSWDGMRKMIQCEKELYDAHCKDHPRAKSLYGIPFPYFDTFDVIYGKDRTGREEEELSAPW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0647600 | OsNip_07t0647600-01 | Chr07 | 27043501 | 27046097 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGTCAAACTCAGTGCTCCAAAGTTGTGCGTGGCAGAGGCAGGAACAAAAGGAAATGGACAGCCGATGAAGATGAGGAGCTTGTCAAAGCATTGTGCGAGGTTTCTCTTGATCCTAGATTTAAGGTCGAAGGAGGGGGATTCAAGAACTGTTATTCTCAAGGGATAGAGAACATTCTTGCGCAAAGGCTGCCAGGCCGTGGTATTAGATCCAGTCCTCATGTCGATTCTCGGTTAAAAGTGCTGAAGAGGAAGTATTATGCGATCAAAGATATGTTAGCGTTGCCCAGGTTCTCGTGGGACGGCATGCGGAAGATGATTCAGTGTGAAAAAGAGTTATATGATGCTCATTGCAAAGATCATCCTAGAGCCAAGAGTTTGTATGGTATCCCATTTCCATATTTTGATACATTTGATGTAATATATGGCAAGGACAGAACAGGCAGAGAGGAGGAGGAATTGTCAGCACCATGGTGA
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| Protein seq | MSQTQCSKVVRGRGRNKRKWTADEDEELVKALCEVSLDPRFKVEGGGFKNCYSQGIENILAQRLPGRGIRSSPHVDSRLKVLKRKYYAIKDMLALPRFSWDGMRKMIQCEKELYDAHCKDHPRAKSLYGIPFPYFDTFDVIYGKDRTGREEEELSAPW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.470231 | 0.389679 | 1.629944 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45330 | RBH | 0.248200 | 0.291923 | 0.442873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0647600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025540 | RBH | 0.549467 | 4.236794 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0008080 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025440 | RBH | 0.0 | 0.0 | 1.962969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013110 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0445300 | RBH | 4.1950415 | 3.021944 | 2.3441305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0457200 | RBH | 3.594695 | 2.6812935 | 13.728315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0013070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0007870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0025680 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025350 | RBH | 0.200425 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025320 | RBH | 0.352532 | 0.0 | 0.799196 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0011820 | RBH | 0.0 | 0.0 | 0.0 |
