Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0628600 | OGI:07072230 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:26044575-26047500 | ||||||||
| Gene Symbol | ORC6, OsORC6 | ||||||||||
| DNA seq | ACAAATATGTCATGTCATCATTTACACAAGAATGTCGCGAGAAAGTAACTTTTTTTTTGTTGATACCATTATGTCAGCATCTTAGAACAAATGAGAAAGGGGGGCAACGATTTCCTTCATGCATTCAGGAGGAACTTCTATGATGCTAAGAGCATTTTTTGCCTCCGTTGAGAAAAATTTAGTTGGCTGCCGATGATACTTCTAGGGCCATGTCTGACGGCTTCTTCTTGAAGTTAAGCTGAGCTTGTTTCCTTGGTTTTGCAGGGTCTGCAACAATACAGCACGATAAGCTCATCGGCTAGATCGTTAAAACTCACTAAGGCCGTTTTTAGTTTGCCCCTATTCCCAACTTTCCATCACATCATATCACATCAAAAAATTTCATACACACATAAACTTCCAACTTTTTTTCCAAACTCCTAACTTTCTTCAAACTTCTAACTTTTTTCAGGAACTAAACACACCCTAAGTGGACGAGGTAGAACAGTTCAGAGTCCAAACCTGGTTTGGTTTGCTTGTTGGAGAGAACCGATGACTTCCAGTCATTGTAAGCTTCCTTTTCCATTTTCTTGTGTCTTTTGTAAGTTGGCAGCTGAGATTGGAAGAAACAGGAACAGCTGCATCAGTCAGTTGTCCAGAAGAATGCACATATCATTTGACTACAAAAATCTGTGACGCCAAAAAGAACCCAAATGAACGTAAAAGGAATATGGTCAGAAACATTCTAAAGGTGCTACAGGTTCAATAAATTAGAAACTACTCGGAAATATGCACAATCATATTCACTTTGGAGTCTTTACCCTTGAAATTTTTACAAGCTCCTCTCTAAGTCTAGTACATAATTAAGGAATCAGTATTCATAAGTGGCACACTGGCACCATGCATTTGTATCGGCTTTTGCAGCCATTCATTGTGTAGATTAAACTATATGTGATCATATTTCAACAAGCTAAAATCACCAAACTAGAAGGTTATGCCTTTGTAACCAGAAAACCTTACTGCCAAAATCAAAAGGTTCTTTACAGGTTAAACAAATGCAGCATGCAATTTTTTTCCAAACAATTTACAGAACCAACCAAACTTATATGTTGTTCTTTTTTTTCTCGCTCTCATCTTACAAAATGCAAGTGACCAAGTGAACGTTTGAAACTACACCATTGTTAGCCTAATGTTGCAGAAAAAAATTCATATATAGTATCAATACCAAGCATCTTAGGCAGTTTCATACTCTGCAAGTTACAAAATAAGGCAAGCTTATCCCTAAAGTTTTATGACATGAATTATCAATACTCTGCAAGTAAGCCATATTAAAGTGGTGCATACGTCTAGTTCATCTTGGTCATCCCCTGAGGATTCACCAGATGAATCACTGTCGTCATCATGTTTCCTTTTGCTAGGCAAAACATCCAGCAGTTCTGCGTCAAAGGTTACAAATTATGAGTATACTGCACAAGATTCCAAGCAAATTATGCACTTCAACACTGCTAGTTGTCATGTGTACAATTCTGAAATGAATAGTCAATCCTGTATATGAAGAAAGGATGCTGAGAAATTAAGGAAAAAAAGGATGGATCCTGCAGAACACAGATACCTCTACTCCCTTTTATGGACTTTGCATCCTTCTTCTCTTTGGCAATCCCAAAAACATCAAAGCAAAGGTCTGCCATGGATGTTGAAACCTGCAGCCACCACAAATTAACAGTCAAAACAGGATGATCCATAGCATAAATCCAATCATGCACATGCATACTCCCATTGTCTAGACATGCGTGCTAGGATAAGATATATGCACTAGCAATTCACGTGAATATATGAGACTGTTAATCATTACAGTTGTAAATTCAGAACTAGATGTTCCGCATAAATCAATCAACTTCAGCTTGTCAACTTTAAGCTGCAAAATAAATAGGGGAAAACATCAGCTTACAAGATGCAAATTATCTATATAAAAAAAATCATTGCTACTGATTCTGCTAGCACCTTATGCCTCTTTGCACATAAATAGAATGCAGCTGCAGTGAACACTGGTCGACCAAAGTCAGTGCTTGCCCGGCGAGAAGGTGGCAGTGCCGCCAAAAAACGCTCCTTGTAGCTGAAAGAAAAACACATTAGGTACAGTTCGAAGGCATCAAATAATTTGTATGCAACACTCGACTACAGCTTAATCAAACAAAATTGCACAGCTCATAATGAACAATTGGACTCAAATACAAGATTTCAGTACAAACGAGCTTCCACGGCCACAAGAGAGCAAACTTACAGCGACAATCCCTTCTGCACGAAAGGTATCAGCCTGACACAGCCGAACTGGATGCCCAATTCACGCACATCCAATGTAGTCCTGCAAGAGGAATTAGGCAATTCCATTGTATTAGTCAAGAGCGAAGACGAGGCATAGTTTATACGCATCGATTGGTAGAACAGAAGAGGAAAGAAGCGTACTTGACACCAAGACCATTCTGCAGCGCGTTGAATGATCTGATATACGCCTTCTCAGACATGCCACTCATCCGCACCGCCTCTGCCCTGTCGAATATCACCTGGAACCTGCGCAAACCACCAGATTAGCAAACCAGGTCACGCCACTGAGCAACACGATTCCCCCTCTAGGCGGGCAATTCGTCGAACACTTGTAAGGCAGTTCGTCGAACACTCACTTGGACGCCGCGATCTCGAGGCAGATGATCGCCTTGCACACCTCCCCCTGCGCGAAGCCAAAAGATCTCTCAGAGACACGAACCACGAGCCAAGCCAACCAAAAAGAAACAGCATAGGAGGAAAAAGCCCCGGTTGCTCACGATGCCGAGGACGGAGGAGTCGAAGGTGACGTCGCAGAGGCGGCGGAGCTCGGCGGCCTTGCGGACGACGGGGCGGGAGCCGGAGAGGCCGAGGCGGGAGGCGATCGACGACATGTCCATGGCCGCCG
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| CDS seq | ATGGACATGTCGTCGATCGCCTCCCGCCTCGGCCTCTCCGGCTCCCGCCCCGTCGTCCGCAAGGCCGCCGAGCTCCGCCGCCTCTGCGACGTCACCTTCGACTCCTCCGTCCTCGGCATCGGGGAGGTGTGCAAGGCGATCATCTGCCTCGAGATCGCGGCGTCCAAGTTCCAGGTGATATTCGACAGGGCAGAGGCGGTGCGGATGAGTGGCATGTCTGAGAAGGCGTATATCAGATCATTCAACGCGCTGCAGAATGGTCTTGGTGTCAAGACTACATTGGATGTGCGTGAATTGGGCATCCAGTTCGGCTGTGTCAGGCTGATACCTTTCGTGCAGAAGGGATTGTCGCTCTACAAGGAGCGTTTTTTGGCGGCACTGCCACCTTCTCGCCGGGCAAGCACTGACTTTGGTCGACCAGTGTTCACTGCAGCTGCATTCTATTTATGTGCAAAGAGGCATAAGCTTAAAGTTGACAAGCTGAAGTTGATTGATTTATGCGGAACATCTAGTTCTGAATTTACAACTGTTTCAACATCCATGGCAGACCTTTGCTTTGATGTTTTTGGGATTGCCAAAGAGAAGAAGGATGCAAAGTCCATAAAAGGGAGTAGAGAACTGCTGGATGTTTTGCCTAGCAAAAGGAAACATGATGACGACAGTGATTCATCTGGTGAATCCTCAGGGGATGACCAAGATGAACTAGACCTGCCAACTTACAAAAGACACAAGAAAATGGAAAAGGAAGCTTACAATGACTGGAAGTCATCGGTTCTCTCCAACAAGCAAACCAAACCAGACCCTGCAAAACCAAGGAAACAAGCTCAGCTTAACTTCAAGAAGAAGCCGTCAGACATGGCCCTAGAAGTATCATCGGCAGCCAACTAA
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| Protein seq | MDMSSIASRLGLSGSRPVVRKAAELRRLCDVTFDSSVLGIGEVCKAIICLEIAASKFQVIFDRAEAVRMSGMSEKAYIRSFNALQNGLGVKTTLDVRELGIQFGCVRLIPFVQKGLSLYKERFLAALPPSRRASTDFGRPVFTAAAFYLCAKRHKLKVDKLKLIDLCGTSSSEFTTVSTSMADLCFDVFGIAKEKKDAKSIKGSRELLDVLPSKRKHDDDSDSSGESSGDDQDELDLPTYKRHKKMEKEAYNDWKSSVLSNKQTKPDPAKPRKQAQLNFKKKPSDMALEVSSAAN |
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| Function | Origin of replication complex subunit 6 [UniProtKB/Swiss-Prot:Q8GSL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0628600 | OsNip_07t0628600-00 | Chr07 | 26044575 | 26047500 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACATGTCGTCGATCGCCTCCCGCCTCGGCCTCTCCGGCTCCCGCCCCGTCGTCCGCAAGGCCGCCGAGCTCCGCCGCCTCTGCGACGTCACCTTCGACTCCTCCGTCCTCGGCATCGGGGAGGTGTGCAAGGCGATCATCTGCCTCGAGATCGCGGCGTCCAAGTTCCAGGTGATATTCGACAGGGCAGAGGCGGTGCGGATGAGTGGCATGTCTGAGAAGGCGTATATCAGATCATTCAACGCGCTGCAGAATGGTCTTGGTGTCAAGACTACATTGGATGTGCGTGAATTGGGCATCCAGTTCGGCTGTGTCAGGCTGATACCTTTCGTGCAGAAGGGATTGTCGCTCTACAAGGAGCGTTTTTTGGCGGCACTGCCACCTTCTCGCCGGGCAAGCACTGACTTTGGTCGACCAGTGTTCACTGCAGCTGCATTCTATTTATGTGCAAAGAGGCATAAGCTTAAAGTTGACAAGCTGAAGTTGATTGATTTATGCGGAACATCTAGTTCTGAATTTACAACTGTTTCAACATCCATGGCAGACCTTTGCTTTGATGTTTTTGGGATTGCCAAAGAGAAGAAGGATGCAAAGTCCATAAAAGGGAGTAGAGAACTGCTGGATGTTTTGCCTAGCAAAAGGAAACATGATGACGACAGTGATTCATCTGGTGAATCCTCAGGGGATGACCAAGATGAACTAGACCTGCCAACTTACAAAAGACACAAGAAAATGGAAAAGGAAGCTTACAATGACTGGAAGTCATCGGTTCTCTCCAACAAGCAAACCAAACCAGACCCTGCAAAACCAAGGAAACAAGCTCAGCTTAACTTCAAGAAGAAGCCGTCAGACATGGCCCTAGAAGTATCATCGGCAGCCAACTAA
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| Protein seq | MDMSSIASRLGLSGSRPVVRKAAELRRLCDVTFDSSVLGIGEVCKAIICLEIAASKFQVIFDRAEAVRMSGMSEKAYIRSFNALQNGLGVKTTLDVRELGIQFGCVRLIPFVQKGLSLYKERFLAALPPSRRASTDFGRPVFTAAAFYLCAKRHKLKVDKLKLIDLCGTSSSEFTTVSTSMADLCFDVFGIAKEKKDAKSIKGSRELLDVLPSKRKHDDDSDSSGESSGDDQDELDLPTYKRHKKMEKEAYNDWKSSVLSNKQTKPDPAKPRKQAQLNFKKKPSDMALEVSSAAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.535220 | 0.230036 | 0.477658 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43540 | RBH | 0.347201 | 0.150925 | 0.137508 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0628600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024190 | RBH | 0.0 | 11.670462 | 1.935920 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024240 | RBH | 0.0 | 0.578825 | 0.556065 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024110 | RBH | 0.0 | 2.668090 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024030 | RBH | 0.0 | 0.062012 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024160 | RBH | 0.000000 | 15.789934 | 2.761313 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0427700 | RBH | 1.421401 | 1.7210285 | 0.7422615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024680 | RBH | 0.0 | 0.293769 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0438600 | RBH | 1.421739 | 0.161428 | 8.0383475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023930 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024080 | RBH | 0.0 | 5.662376 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024190 | RBH | 0.0 | 0.687701 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023940 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023880 | RBH | 0.0 | 0.0 | 0.338807 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023900 | RBH | 0.0 | 6.544786 | 0.000000 |
