Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0627100 | OGI:07006270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:25986046-25987423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGGGACTACGTCTACTACGGCGAGGTCGTCGTCTTCGACACCACGTTCCGGACGAACAGGTGCGGCGCGGCGTTCGTCCCGTTCCTCGGGATGAGCCGCCACCGCCGCCCCGCCGTGTTCGGCTGCGGCGTCGTCGCGGACGGCTCCGTCGACTCGTGCGTCTGGCTGCTGCGCGCGTTCAAGGAGTCGATCCAGGGGGATGTGCCCAAGTCCGTCATCACCGACGGCGGCGACGCGGTGGTCGCCGCCGTCAAGGCCGTGTTCCCGGAGTCCAACCACCGCGTGTGAGCGTGGCACGTGGAGCGGTGGGCCGGGGAGCACCTCGTCGATGGCCCGGCGCGGGACGACTTCTTGTCGCTGGCGCGCGACGCGTGCTCGCCCGCGGCGTTCGACGAGCGGTGGAGCGTGTTCATGGCGGAGCACCGGACAGCCGAGAACGAGGGCTGGCTGGAGACGATGCACGCGACGAGGGAGCTCTGGGCCGCCGCGTTCACCCGCCACAAGCTCTTCCTCGGCATGGCGAGCGACCAGCGGACGGAGTAACTCGCCACGGGCCTCCACACGGGCCTCGCCGACGACATGTCGCTGCACGACCTGGTGCGCCACGCCGACTACTGGACCTGGCGCCTGCGCGCCGACGACGCGGCCTCCATGTCCCGGCTGCCGCTGACCACCAATCACCAGTTCCTCGAGGCGCACGCCGCGCGGCGCTTCACCCCGGCCAACTTCCACCTCGTCCGCGAGGAGATCGAGAAGATGGACGGCTTCGTCGTCGTCGACACGCTGCCCACCATGTCCAGCCCCGACGTAAAGATCTACCTGCTCGCGCCCAAGCAGGAAGCCGCCGCCGGCGAACCCTTCGTGGTGCAATGGTGCGACCGCGGCGGCGCGCTCGGCACCGACGACATGGACGACGGGAAGATGGCCGTGACGTGCAGCTGCCGGAAGATGGAGAGCGATCGCCTCCCGTGCCGCCACATCCTCCGCGTGATCACCCACCGCGGCGTGTCGCGGATGGCGGACTGCTTCATGCCGCGGCGGCACCGGCGGAATCTCGAAGCAAAGCTGGAGAGGGTGGAGGAGATGAAGGAGCTGTCGAGCAAGGTGTTCGACCTGGCGTCGGATGACGCGGGGGAGTTCGAGGATGTCATGGGGTTCATGGAGCGATTCCTGGAAGAGCGGCGGCTCGACGCCGCGTGGGAGCCGAAGCGCAGAGGCCATGTCGGCGTCGACACCGACGACGACGAGGGCGACTCGCCGTCGACCAAGAAGATCAAGTTGTCCGACGAGTGAGCATTTGAAAGATTATCAAACAACCCGTTTCACTGTCAAACTCTATCTACCGAGTGTGGTTTTATTTATTTATTTACTACTTCG
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| CDS seq | TGGGACTACGTCTACTACGGCGAGGTCGTCGTCTTCGACACCACGTTCCGGACGAACAGGTGCGGCGCGGCGTTCGTCCCGTTCCTCGGGATGAGCCGCCACCGCCGCCCCGCCGTGTTCGGCTGCGGCGTCGTCGCGGACGGCTCCGTCGACTCGTGCGTCTGGCTGCTGCGCGCGTTCAAGGAGTCGATCCAGGGGGATGTGCCCAAGTCCGTCATCACCGACGGCGGCGACGCGGTGGTCGCCGCCGTCAAGGCCGTGTTCCCGGAGTCCAACCACCGCGTGTGA |
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| Protein seq | WDYVYYGEVVVFDTTFRTNRCGAAFVPFLGMSRHRRPAVFGCGVVADGSVDSCVWLLRAFKESIQGDVPKSVITDGGDAVVAAVKAVFPESNHRV |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0627100 | OsNip_07t0627100-01 | Chr07 | 25986046 | 25987423 | + | RAP2018-11-26 | ||
| CDS seq | TGGGACTACGTCTACTACGGCGAGGTCGTCGTCTTCGACACCACGTTCCGGACGAACAGGTGCGGCGCGGCGTTCGTCCCGTTCCTCGGGATGAGCCGCCACCGCCGCCCCGCCGTGTTCGGCTGCGGCGTCGTCGCGGACGGCTCCGTCGACTCGTGCGTCTGGCTGCTGCGCGCGTTCAAGGAGTCGATCCAGGGGGATGTGCCCAAGTCCGTCATCACCGACGGCGGCGACGCGGTGGTCGCCGCCGTCAAGGCCGTGTTCCCGGAGTCCAACCACCGCGTGTGA
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| Protein seq | WDYVYYGEVVVFDTTFRTNRCGAAFVPFLGMSRHRRPAVFGCGVVADGSVDSCVWLLRAFKESIQGDVPKSVITDGGDAVVAAVKAVFPESNHRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g31400 | SBH | 1.401670 | 1.033543 | 0.502126 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0627100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023960 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024020 | RBH | 0.0 | 0.0 | 0.584369 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0402300 | RBH | 0 | 0.0124665 | 0.004576 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024540 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0400200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024050 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023720 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023750 | RBH | 0.0 | 0.0 | 0.0 |
