Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0625500 | OGI:07071830 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:25907654-25908496 | ||||||||
| Gene Symbol | OSK22, OSK23 | ||||||||||
| DNA seq | GGCTTGGACCACTCACCGATCAATCCGTCTCGTCTCGTTCCACTGCTTCACCGCGAGCGAAAGGGGAGAGTTGGGGTTTTGCGAGCGAGATCGAGCGATGGCGACGGGGAGCGGAGCAGCGGCGGCGGCGGCGGCGGATGCGGAGGAGAAGGAGAGCGGCAGCAGGATGATCACCCTGACGAGCAACGAGGGCAAGGCATTCGTTGTGACGGAGGCGTCGGCGAGGCAGTCCGCGACCATCAGGAGCATGGTCGACGACGGCGGCTGCGTCGACAAGGGCTTCCCGCTCCCCAACGTCGACTCCAAGACCCTCGCGAGGGTGATCCAGTACTGCGACGAGCACGGCAACAAGGAGCCCCACACCGTCGACGAGAGAGCGGCGCTCGCCAAGTTCGACAGGGACTTCATCGCCGAGCTGGACGCCGACAAGGCCTTCCTCTACGACGTCACCATGGCCGCCAACTACCTCCACATCCAAGGGCTCCTCGCCCTCACCACCCAGTGCGTCGCCGACACCATCAAGGGCAAGACCCCCGAGGAGATCCGCACGGCCTTCGGCATCGAGTACGACCTCACCGCGCAGGACGAGAAGGAGATCAAGGAGGAGGATACTCACGCATGACGCACCAGCTAGCTGCCCCCGTAAGCCGTAGTGTCCTCGTCGTAACGATTGTTCTCTCGTAGTTGCGCGTTGTGTCTCTGGTGGATTCAGATCCAATCAAGCTTACTGCCTTTGAGTTCGTGCATCCTGTGTCCAAGTAGAAGTGTAGAACTGAGTCGGCTGTGTCGTTGAATGCTTTTGCAACTGCTGGATCGCTTGCATGAAGTGAATATTTTGCCCCG
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| CDS seq | ATGGCGACGGGGAGCGGAGCAGCGGCGGCGGCGGCGGCGGATGCGGAGGAGAAGGAGAGCGGCAGCAGGATGATCACCCTGACGAGCAACGAGGGCAAGGCATTCGTTGTGACGGAGGCGTCGGCGAGGCAGTCCGCGACCATCAGGAGCATGGTCGACGACGGCGGCTGCGTCGACAAGGGCTTCCCGCTCCCCAACGTCGACTCCAAGACCCTCGCGAGGGTGATCCAGTACTGCGACGAGCACGGCAACAAGGAGCCCCACACCGTCGACGAGAGAGCGGCGCTCGCCAAGTTCGACAGGGACTTCATCGCCGAGCTGGACGCCGACAAGGCCTTCCTCTACGACGTCACCATGGCCGCCAACTACCTCCACATCCAAGGGCTCCTCGCCCTCACCACCCAGTGCGTCGCCGACACCATCAAGGGCAAGACCCCCGAGGAGATCCGCACGGCCTTCGGCATCGAGTACGACCTCACCGCGCAGGACGAGAAGGAGATCAAGGAGGAGGATACTCACGCATGA
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| Protein seq | MATGSGAAAAAAADAEEKESGSRMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA |
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| Function | SKP1-like protein 11 [UniProtKB/Swiss-Prot:O49484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0625500 | OsNip_07t0625500-01 | Chr07 | 25907654 | 25908496 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGACGGGGAGCGGAGCAGCGGCGGCGGCGGCGGCGGATGCGGAGGAGAAGGAGAGCGGCAGCAGGATGATCACCCTGACGAGCAACGAGGGCAAGGCATTCGTTGTGACGGAGGCGTCGGCGAGGCAGTCCGCGACCATCAGGAGCATGGTCGACGACGGCGGCTGCGTCGACAAGGGCTTCCCGCTCCCCAACGTCGACTCCAAGACCCTCGCGAGGGTGATCCAGTACTGCGACGAGCACGGCAACAAGGAGCCCCACACCGTCGACGAGAGAGCGGCGCTCGCCAAGTTCGACAGGGACTTCATCGCCGAGCTGGACGCCGACAAGGCCTTCCTCTACGACGTCACCATGGCCGCCAACTACCTCCACATCCAAGGGCTCCTCGCCCTCACCACCCAGTGCGTCGCCGACACCATCAAGGGCAAGACCCCCGAGGAGATCCGCACGGCCTTCGGCATCGAGTACGACCTCACCGCGCAGGACGAGAAGGAGATCAAGGAGGAGGATACTCACGCATGA
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| Protein seq | MATGSGAAAAAAADAEEKESGSRMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0625500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023920 | RBH | 0.0 | 0.0 | 3.347717 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023990 | RBH | 0.0 | 0.0 | 1.390829 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023850 | RBH | 0.0 | 1.210347 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023780 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023890 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0424800 | RBH | 0.048225 | 0.083886 | 1.1226645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024400 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0435600 | RBH | 0 | 0 | 0.0301935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023600 | SBH | 0.0 | 0.0 | 1.125439 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023630 | SBH | 0.0 | 0.0 | 1.099320 |
