Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0622100 | OGI:07071360 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:25722880-25725402 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCGCTCAAAAACCCTAGCCCTCGCGCCGCCGCCGCCGCCGCTCCCCCGCGCACTCGCCGCTCGCCGCCCGCGAGCTCGCGCCGCTTCGCAACCATGAAGGTAAGACGCTCCTCGTCGCCGTTGCTGGATCCCCCAGATGAGCTAGGGATTTTATGGTAGGGTTAGATTTTTTTTTCGTGGGTGGCTTCTGATTCGTGTGGTTTCCGCCTTCGTTTTCAGTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTGTGAGTATTCTCGCCGCCGCTCCCCCGTTTGTTTCGTTTCCCCAATATTAGAGAGAGTGGTGTTGGTAGTGGCAAGCCGAATCAGCGCGAACCCTTGTGTTGATGTGGTCCGTTGATTTACATAACAAATCGCATTTCTCTTTTTGTGGTTGGACTTGTGTTGATGTACTTAGGTCTAATTTTTCTTAGCCTTGGGGGATTTGGATGCCGTTTAATGTTTGTAGTAGACGGATACCATTTTTTGTGATTGGGCTCTGTGCTTATGTACGTAGGTCTAACATGTCTCCCCTTTGGGGATTTGGACGCCATTTGTGGCTGTTCTACTGCTAATGTTTGTAGTAGACTGGATTCATTGGATTGCGTGCCTCTGCACAGACCAACTGTGGAATGGTGATCGTTCCTGTGTGAATCAGGTGTACATGGCTTAAGATTGTGAGGTTGTTTGACATTTTATCATTATGTGGACCTCTTTGCTTATATTTGTGAGGACATGGAGTTATACTATAATATTTGACTTACAGGTTGCAAGAGTAACTAACGTATATATTGTGCCACTTTTCACTTAGAGCATGGACATGCAAATCTAGATAGCATTTTAAGTTAACATGTTTCGGTATTCTTATTGATTAAATTGTGGTGATTGGATAGTTTCATCAGTACTTGCAATCCTTTGCATGAGTATAGAGAAATACAAAGATCCATTCTTTACAAAGCCGTATGATTTCTAGTTGGACTTGTTTTTGTATCTTACTTCAGTGCATGTTGGGGGCACAATTAAACTGATTTCTGTGATATGTTTTTAGTCAACTTCCGCAACTAAAATGCGGCAGGGAGTTAGTTTTCATGACCTGTAACAATGTGGGTGCCTTTCAATGTCTACCTTGTTAGCTGATGACTGAACATTAGTTTGAGTTTGTTCTGTAAAATTGGATATCTGATGCCTTTGTATGTACTGCAGGCGTGCATTTTTTGACAAGAGGATCTCTCAGGAGGTCAGTGGCGATGCTCTGGGCGAGGTAATATCGTGAGGCCTCTGATGTTTCCTAATTACTGTTACCTAGTCTTAAGATGTTAACATATCTCTCTCCTTTTTCTCAGGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGGTAAAAAGGCTCTATTTCTATTATTGACTTTCGGATATTCATGCCCTTGCTCTGACCATATTATGTTACTTGTATGGCAGGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTTGGTGATTGTCAAGAAGGGTGAGAATGACCTGCCTGGCCTTACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCCTCCAAGATCAGGAAGCTCTTCAACCTTTCCAAGGATGATGATGTCCGCAAATATGTCAACACCTACCGCAGGACATTCACTACCAAGAATGGTGAGCTTTCCTGCAATGTTTAATAATCTACCTCATTTCTAGTATGTCCTGCTCCTGATCTGCATTGATCTTAGTACTGTTTTAATTTTCTTATGGATAAATTCACCATATTATATTGTCTGCATGTTTGTCAGTTTTCAAGTCAAAATATATCTTCCAGGTAGCTTTCTGCTTACCTACCTAATGGTGTTGTTGTGTTGCAGGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCTTGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGCCAAGAAGAAGTCGGAGGCTGCTGAGTACCAGAAGCTTCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCCGGAGCGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTTCTGCTGCCAAGGCTGCTGCTACCACCGCCTAAGTTGGTTTAGAGCTTGAGATGTTTTAAAATCGTTCATTCCTGAGTTATAATAGCCCAAGAACCTCTTGCACTATGTTCGATCAATCCACCCCAGCTACTTTCAGATTTCTCGAGTAATTGGTGCAATTTTGCATGAACATGCTGCCTTGTTTGGAATTCTTTTTTGAGTACCGGAGAATTACCATGTTAGTGTGTTGGTTTATGTTTTGAAGGTGGCCTTGTTATTCTGTTGC
More
|
||||||||||
| CDS seq | ATGAAGTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTGCGTGCATTTTTTGACAAGAGGATCTCTCAGGAGGTCAGTGGCGATGCTCTGGGCGAGGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTTGGTGATTGTCAAGAAGGGTGAGAATGACCTGCCTGGCCTTACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCCTCCAAGATCAGGAAGCTCTTCAACCTTTCCAAGGATGATGATGTCCGCAAATATGTCAACACCTACCGCAGGACATTCACTACCAAGAATGGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCTTGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGCCAAGAAGAAGTCGGAGGCTGCTGAGTACCAGAAGCTTCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCCGGAGCGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTTCTGCTGCCAAGGCTGCTGCTACCACCGCCTAA
More
|
||||||||||
| Protein seq | MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLSSAAKAAATTA |
||||||||||
| Function | 40S ribosomal protein S6 [UniProtKB/Swiss-Prot:Q9M3V8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0622100 | OsNip_07t0622100-01 | Chr07 | 25722884 | 25725402 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCTGCGTGCATTTTTTGACAAGAGGATCTCTCAGGAGGTCAGTGGCGATGCTCTGGGCGAGGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTTGGTGATTGTCAAGAAGGGTGAGAATGACCTGCCTGGCCTTACTGACACTGAGAAGCCCAGGATGAGGGGACCCAAGAGGGCCTCCAAGATCAGGAAGCTCTTCAACCTTTCCAAGGATGATGATGTCCGCAAATATGTCAACACCTACCGCAGGACATTCACTACCAAGAATGGCAAGAAGGTGAGCAAGGCTCCTAAGATCCAGCGTCTTGTGACTCCCCTCACCCTCCAGAGGAAGCGTGCCAGAATCGCTGACAAGAAGAAGAGGATCGCCAAGAAGAAGTCGGAGGCTGCTGAGTACCAGAAGCTTCTTGCCCAGAGGCTCAAGGAGCAGAGGGAACGCCGGAGCGAGAGCTTGGCAAAGAGGAGGTCCAAGCTTTCTTCTGCTGCCAAGGCTGCTGCTACCACCGCCTAA
More
|
|||||||
| Protein seq | MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRSKLSSAAKAAATTA
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0622100 | OsNip_07t0622100-02 | Chr07 | 25722880 | 25725378 | + | IsoSeq | ||
| CDS seq | ATGACGACCAGAAGCTGCGTGCATTTTTTGACAAGAGGATCTCTCAGGAGGTCAGTGGCGATGCTCTGGGCGAGGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCC |
|||||||
| Protein seq | MTTRSCVHFLTRGSLRRSVAMLWARNSRAMSSRSWGVVTSRVS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 25724263 | 25724724 | + | OsNip_07t0622100-02 | OsNip_07t0622100-02,OsNip_07t0622100-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 19.426945 | 23.887039 | 55.176903 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0390000 | RBH | 20.406122 | 15.229557 | 49.303829 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42950 | RBH | 15.245823 | 18.428549 | 16.200197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0622100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023710 | RBH | 5.201979 | 68.163132 | 34.265629 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023780 | RBH | 0.702855 | 34.983398 | 13.057433 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023640 | RBH | 10.401893 | 97.015602 | 52.172279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023570 | RBH | 0.999429 | 8.978589 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023680 | RBH | 22.057968 | 356.511353 | 111.061440 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0421900 | RBH | 11.3945355 | 32.6093505 | 14.5273875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024190 | RBH | 3.443553 | 15.391063 | 9.601827 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0432500 | RBH | 29.8581875 | 62.8741935 | 225.022446 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023450 | RBH | 2.169613 | 3.226803 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023600 | RBH | 2.285211 | 286.558289 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023500 | RBH | 25.062153 | 272.664032 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023700 | RBH | 4.820641 | 20.517464 | 10.525121 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023460 | RBH | 1.995730 | 120.874855 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023390 | RBH | 2.153818 | 122.573769 | 22.910210 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023420 | RBH | 8.011293 | 181.822372 | 55.879585 |
