Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0588100 | OGI:07066630 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:23933038-23935489 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGCTGTGACCGCAGAAAAAAATATTCACCAATAATTACCACATGAACATTCTCCATCCTTGAAATGATGAAACCGCCTGACATCTCTAACAACAATTTCCCGTCCAACCGCCTTTGACATGAACATCATTGCAGTATGACAGTCACCACATATTCTCAAGTTTTTTAAAACAGTAACTGTAGCTCCAGGAGGCAACTTTAGAAGTCCAAATCCAACTGCCAGCTTCTCACTATGTGCAAATAATATGTATTCCTTTTCATGAGGCTCCATATCATGCAACACAAACTTTGTATCAGGAACATATCCCAGCTTTCTCATCCTAGCACCAATCACTTCAAGGAATTGGTAGACTTCCTGTGCTTCTGGATGTTTTGTATCACCAACAAGAAACACATGGATTTTACTTCCTACTTCTATCCAACTGCACCCAGGCTCCTTCTTGACCCCACGATCACGCATTAGCTTTCTAACTCTTGCAGCATCGACCCAACGTCCAGCAGCTGAATATGTGTTAGACAGTAGGATGTATGTTCCATCATGCTGTGGTATCATCCGAAACAGCTGGTCAGCTGCATAAGCACCAAATTCCATATCTCCATTAGTCCGACAGCCAGAGAGAATCGCCTCCCAAATGGACGGGGTAGGCTCAAAAGGCATTGTCTTGATCAAATCTCTAGCTTCTCCAATTCTTCCAGAGCGACCAAGTAAATCTATCAGCCGTGCATAATGATCTTCTCCAGGACTAATGCCAAAGTCCCTCTTCATGGACTCAAAATAATGGAAGCCTTCATCTACCAAACCAGCATGGTTACATGCTGTCAAAATTGTGAGGAAAGAAATTCGGTCAGGATCTATGCCTTCAGCAACCATCTGGTCAAATAGCTCAAGTGCCTCTCTACCGTGTCCATGTTGCCCAAGAGCTGAAATCATGGCATTCCACGAGACAGAGTCTAAATTGGGCATCACAAGGAACACAAGACGAGCATCGTTCACAGCGCCACATTTGGCATACATTGTTAGAAGTGCATTTCCGGCAGAATTGCTTGCCTCAAATCCACACTGTACAAGATGTGCGTGGAGCTGCCTTCCATGCTTCAGCGCTCCAAGTTCACCACAGGCAGCTATTGCACCCGCATAGGTGTAGTCGCATGGTTTGACATCCTCAGCTCTCATCTGGTTAAACAGTTTCAGAGCATCTTCTGAAAGCCCTCCGTGGACATATCCTGAGACCATCACCATCCATGACAAATCGTTTTTATATGGCATCACCTTAAATACCTCAACTGCTTTGTCCAAACAGCCGCTGTCAATGTATCCCGACAAAATGGTGTTCCAAGAAACAACATCCTTCAGATTCATAGTGTCAAATATCCTCTTCGCAATCACAATCTTTCCACCCTTCGAGTACAAAGTCACTAACGCATTGTTAACAGGCAATGCTGCCTCAGGAACGAAATTCGGCTGTAACCGAATAATCTGACCATGGACTGACTTCCCATGCACAAAGAATCCAGCATTTGCACACGCACTCAGGACGCTAGTAAAAGTGAACTCATCAAGCGGAACCTTTTCCGACACCATCCTCCTGAATAGCTCAAAGGCGTCTGCACACATTCCCGATTGGACATACCCTGAGATCATCGCATTCCACACGACATCAAACTTACCATCAACCTCCTCAAAAACTGATCTAGCAGCATTGACATCGCCTCTCCTGACATAGCCGACGACCATAGTGGTCCATGTGAGGTCATCCTTATCCGGCATTTCGTCGAGCACCTTCCGTGCGTCCCAGGAGGCCTCAGGCGTGTCGCACTTCATGTACAGAGCAATGAGCGCATTGGACACAGACAAGACAGCCGCCGCGCCGGACTTGAGCACGGAGCAGTGCAGCTGCGTGCAGTGTGGCGCGGCGAGGTTGTGCATCTGGCCGACGGCGCTGATGAGCGCGGTGAAGGAGTAATCGTCGGGGCGGAGTGAGCCGGAGCCCAGCAGGGCGTGGAACACGGAGACCGCGGGCGCGGCGAGGGACGCCCTCGCGAACGCGGACATCATGGCGTTGTGGAGCACGGTGTCGCGGCGGGCGGGCGGGACGGCGTCGAAGAAGGCGGCGGCGTCCCGGAGGCGGCCGGCGGCGGCGTGCGCGGCGACGAGGGAGGTGGCGGCGACGGGGCCCGGGTCGGGGTCCGAGCGGAAGAGAGCCGCGGGGGTGGCGAGGTCGGGGGAGAGGGTGTAGAGGTGGATGAGGCGGAGGGTGAGGTGGGGGTGGGACGGGGCGTGGAGGAGGTCGGCGGTGAGAAGGCGGGCGTGGAGGCAGCGGAGGGCGCGGAGGAAGGAGGAGGAGGGGCAGGTCGGGGCCGGCGAGTGGCGCTCGGCGAGGCGGCGGAGGAGGAGGGAGCATTGGTGGGCGAGGGAGGCGACGGCGGTCGGCGGCGGCCGCCATGGCCGCAT
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| CDS seq | ATGCGGCCATGGCGGCCGCCGCCGACCGCCGTCGCCTCCCTCGCCCACCAATGCTCCCTCCTCCTCCGCCGCCTCGCCGAGCGCCACTCGCCGGCCCCGACCTGCCCCTCCTCCTCCTTCCTCCGCGCCCTCCGCTGCCTCCACGCCCGCCTTCTCACCGCCGACCTCCTCCACGCCCCGTCCCACCCCCACCTCACCCTCCGCCTCATCCACCTCTACACCCTCTCCCCCGACCTCGCCACCCCCGCGGCTCTCTTCCGCTCGGACCCCGACCCGGGCCCCGTCGCCGCCACCTCCCTCGTCGCCGCGCACGCCGCCGCCGGCCGCCTCCGGGACGCCGCCGCCTTCTTCGACGCCGTCCCGCCCGCCCGCCGCGACACCGTGCTCCACAACGCCATGATGTCCGCGTTCGCGAGGGCGTCCCTCGCCGCGCCCGCGGTCTCCGTGTTCCACGCCCTGCTGGGCTCCGGCTCACTCCGCCCCGACGATTACTCCTTCACCGCGCTCATCAGCGCCGTCGGCCAGATGCACAACCTCGCCGCGCCACACTGCACGCAGCTGCACTGCTCCGTGCTCAAGTCCGGCGCGGCGGCTGTCTTGTCTGTGTCCAATGCGCTCATTGCTCTGTACATGAAGTGCGACACGCCTGAGGCCTCCTGGGACGCACGGAAGGTGCTCGACGAAATGCCGGATAAGGATGACCTCACATGGACCACTATGGTCGTCGGCTATGTCAGGAGAGGCGATGTCAATGCTGCTAGATCAGTTTTTGAGGAGGTTGATGGTAAGTTTGATGTCGTGTGGAATGCGATGATCTCAGGGTATGTCCAATCGGGAATGTGTGCAGACGCCTTTGAGCTATTCAGGAGGATGGTGTCGGAAAAGGTTCCGCTTGATGAGTTCACTTTTACTAGCGTCCTGAGTGCGTGTGCAAATGCTGGATTCTTTGTGCATGGGAAGTCAGTCCATGGTCAGATTATTCGGTTACAGCCGAATTTCGTTCCTGAGGCAGCATTGCCTGTTAACAATGCGTTAGTGACTTTGTACTCGAAGGGTGGAAAGATTGTGATTGCGAAGAGGATATTTGACACTATGAATCTGAAGGATGTTGTTTCTTGGAACACCATTTTGTCGGGATACATTGACAGCGGCTGTTTGGACAAAGCAGTTGAGGTATTTAAGGTGATGCCATATAAAAACGATTTGTCATGGATGGTGATGGTCTCAGGATATGTCCACGGAGGGCTTTCAGAAGATGCTCTGAAACTGTTTAACCAGATGAGAGCTGAGGATGTCAAACCATGCGACTACACCTATGCGGGTGCAATAGCTGCCTGTGGTGAACTTGGAGCGCTGAAGCATGGAAGGCAGCTCCACGCACATCTTGTACAGTGTGGATTTGAGGCAAGCAATTCTGCCGGAAATGCACTTCTAACAATGTATGCCAAATGTGGCGCTGTGAACGATGCTCGTCTTGTGTTCCTTGTGATGCCCAATTTAGACTCTGTCTCGTGGAATGCCATGATTTCAGCTCTTGGGCAACATGGACACGGTAGAGAGGCACTTGAGCTATTTGACCAGATGGTTGCTGAAGGCATAGATCCTGACCGAATTTCTTTCCTCACAATTTTGACAGCATGTAACCATGCTGGTTTGGTAGATGAAGGCTTCCATTATTTTGAGTCCATGAAGAGGGACTTTGGCATTAGTCCTGGAGAAGATCATTATGCACGGCTGATAGATTTACTTGGTCGCTCTGGAAGAATTGGAGAAGCTAGAGATTTGATCAAGACAATGCCTTTTGAGCCTACCCCGTCCATTTGGGAGGCGATTCTCTCTGGCTGTCGGACTAATGGAGATATGGAATTTGGTGCTTATGCAGCTGACCAGCTGTTTCGGATGATACCACAGCATGATGGAACATACATCCTACTGTCTAACACATATTCAGCTGCTGGACGTTGGGTCGATGCTGCAAGAGTTAGAAAGCTAATGCGTGATCGTGGGGTCAAGAAGGAGCCTGGGTGCAGTTGGATAGAAGTAGGAAGTAAAATCCATGTGTTTCTTGTTGGTGATACAAAACATCCAGAAGCACAGGAAGTCTACCAATTCCTTGAAGTGATTGGTGCTAGGATGAGAAAGCTGGGATATGTTCCTGATACAAAGTTTGTGTTGCATGATATGGAGCCTCATGAAAAGGAATACATATTATTTGCACATAGTGAGAAGCTGGCAGTTGGATTTGGACTTCTAAAGTTGCCTCCTGGAGCTACAGTTACTGTTTTAAAAAACTTGAGAATATGTGGTGACTGTCATACTGCAATGATGTTCATGTCAAAGGCGGTTGGACGGGAAATTGTTGTTAGAGATGTCAGGCGGTTTCATCATTTCAAGGATGGAGAATGTTCATGTGGTAATTATTGGTGA
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| Protein seq | MRPWRPPPTAVASLAHQCSLLLRRLAERHSPAPTCPSSSFLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW |
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| Function | Pentatricopeptide repeat-containing protein At1g25360 [UniProtKB/Swiss-Prot:Q9FRI5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0588100 | OsNip_07t0588100-00 | Chr07 | 23933038 | 23935489 | - | RAP2018-11-26 | ||
| CDS seq | ATGCGGCCATGGCGGCCGCCGCCGACCGCCGTCGCCTCCCTCGCCCACCAATGCTCCCTCCTCCTCCGCCGCCTCGCCGAGCGCCACTCGCCGGCCCCGACCTGCCCCTCCTCCTCCTTCCTCCGCGCCCTCCGCTGCCTCCACGCCCGCCTTCTCACCGCCGACCTCCTCCACGCCCCGTCCCACCCCCACCTCACCCTCCGCCTCATCCACCTCTACACCCTCTCCCCCGACCTCGCCACCCCCGCGGCTCTCTTCCGCTCGGACCCCGACCCGGGCCCCGTCGCCGCCACCTCCCTCGTCGCCGCGCACGCCGCCGCCGGCCGCCTCCGGGACGCCGCCGCCTTCTTCGACGCCGTCCCGCCCGCCCGCCGCGACACCGTGCTCCACAACGCCATGATGTCCGCGTTCGCGAGGGCGTCCCTCGCCGCGCCCGCGGTCTCCGTGTTCCACGCCCTGCTGGGCTCCGGCTCACTCCGCCCCGACGATTACTCCTTCACCGCGCTCATCAGCGCCGTCGGCCAGATGCACAACCTCGCCGCGCCACACTGCACGCAGCTGCACTGCTCCGTGCTCAAGTCCGGCGCGGCGGCTGTCTTGTCTGTGTCCAATGCGCTCATTGCTCTGTACATGAAGTGCGACACGCCTGAGGCCTCCTGGGACGCACGGAAGGTGCTCGACGAAATGCCGGATAAGGATGACCTCACATGGACCACTATGGTCGTCGGCTATGTCAGGAGAGGCGATGTCAATGCTGCTAGATCAGTTTTTGAGGAGGTTGATGGTAAGTTTGATGTCGTGTGGAATGCGATGATCTCAGGGTATGTCCAATCGGGAATGTGTGCAGACGCCTTTGAGCTATTCAGGAGGATGGTGTCGGAAAAGGTTCCGCTTGATGAGTTCACTTTTACTAGCGTCCTGAGTGCGTGTGCAAATGCTGGATTCTTTGTGCATGGGAAGTCAGTCCATGGTCAGATTATTCGGTTACAGCCGAATTTCGTTCCTGAGGCAGCATTGCCTGTTAACAATGCGTTAGTGACTTTGTACTCGAAGGGTGGAAAGATTGTGATTGCGAAGAGGATATTTGACACTATGAATCTGAAGGATGTTGTTTCTTGGAACACCATTTTGTCGGGATACATTGACAGCGGCTGTTTGGACAAAGCAGTTGAGGTATTTAAGGTGATGCCATATAAAAACGATTTGTCATGGATGGTGATGGTCTCAGGATATGTCCACGGAGGGCTTTCAGAAGATGCTCTGAAACTGTTTAACCAGATGAGAGCTGAGGATGTCAAACCATGCGACTACACCTATGCGGGTGCAATAGCTGCCTGTGGTGAACTTGGAGCGCTGAAGCATGGAAGGCAGCTCCACGCACATCTTGTACAGTGTGGATTTGAGGCAAGCAATTCTGCCGGAAATGCACTTCTAACAATGTATGCCAAATGTGGCGCTGTGAACGATGCTCGTCTTGTGTTCCTTGTGATGCCCAATTTAGACTCTGTCTCGTGGAATGCCATGATTTCAGCTCTTGGGCAACATGGACACGGTAGAGAGGCACTTGAGCTATTTGACCAGATGGTTGCTGAAGGCATAGATCCTGACCGAATTTCTTTCCTCACAATTTTGACAGCATGTAACCATGCTGGTTTGGTAGATGAAGGCTTCCATTATTTTGAGTCCATGAAGAGGGACTTTGGCATTAGTCCTGGAGAAGATCATTATGCACGGCTGATAGATTTACTTGGTCGCTCTGGAAGAATTGGAGAAGCTAGAGATTTGATCAAGACAATGCCTTTTGAGCCTACCCCGTCCATTTGGGAGGCGATTCTCTCTGGCTGTCGGACTAATGGAGATATGGAATTTGGTGCTTATGCAGCTGACCAGCTGTTTCGGATGATACCACAGCATGATGGAACATACATCCTACTGTCTAACACATATTCAGCTGCTGGACGTTGGGTCGATGCTGCAAGAGTTAGAAAGCTAATGCGTGATCGTGGGGTCAAGAAGGAGCCTGGGTGCAGTTGGATAGAAGTAGGAAGTAAAATCCATGTGTTTCTTGTTGGTGATACAAAACATCCAGAAGCACAGGAAGTCTACCAATTCCTTGAAGTGATTGGTGCTAGGATGAGAAAGCTGGGATATGTTCCTGATACAAAGTTTGTGTTGCATGATATGGAGCCTCATGAAAAGGAATACATATTATTTGCACATAGTGAGAAGCTGGCAGTTGGATTTGGACTTCTAAAGTTGCCTCCTGGAGCTACAGTTACTGTTTTAAAAAACTTGAGAATATGTGGTGACTGTCATACTGCAATGATGTTCATGTCAAAGGCGGTTGGACGGGAAATTGTTGTTAGAGATGTCAGGCGGTTTCATCATTTCAAGGATGGAGAATGTTCATGTGGTAATTATTGGTGA
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| Protein seq | MRPWRPPPTAVASLAHQCSLLLRRLAERHSPAPTCPSSSFLRALRCLHARLLTADLLHAPSHPHLTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.298378 | 0.204222 | 0.243360 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0435200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g39910 | RBH | 0.203857 | 0.138771 | 0.063290 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0588100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0021490 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0021510 | RBH | 0.0 | 0.0 | 0.186902 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0021420 | RBH | 0.000000 | 0.0 | 0.782983 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0021270 | RBH | 0.0 | 0.034556 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0021350 | RBH | 0.0 | 2.016208 | 0.662425 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0391300 | RBH | 0.386273 | 0.802826 | 0.1389405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0021780 | RBH | 0.0 | 0.093654 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0404400 | RBH | 0.4082205 | 0.6919685 | 1.6872525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0021090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0021250 | RBH | 0.208402 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0021140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0021410 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0021110 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021020 | RBH | 0.091848 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021080 | RBH | 0.000000 | 3.345027 | 0.000000 |
