Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0540600 | OGI:07059250 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:21345784-21346908 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATGGCTGCCCCACAGGCCAACATCAAACCTAGCGTCCCTGTAGTTTCCGGGGCTCGCCGGGCGAAGAACAAGGAGTGGAGGTGCGATTTTTGACGTTCGTTTGATGGTGAGTGCAAGCCACAGTAAGACACAGCGATCGAGCAGCAACTCACCTTCTCTATTATTAATATTACCTGATGCTGCCGGCCGCAGCCCCGGCGGTGAGGGCGGCAGCCCCGATGGTGCGGACAGCCCTGGTGGTGGTGGTGAGGGCGGCAGCCCCGACAACTGCAACAGCGGCCGGCCGGAGAAGAACTCGTACGCCTCAAACCGGAAGTTGCACCGAACGCCGAAGACCCTGCCGCCGGGCTTCCCGACGAAGTACTTGGGCATCATCCTCCTGATTATGTCCCCGAGGCAGCTCCGGCAGTCGGCCTCCGACATGTCCGGCGTGCACTGAGCCAGCGAGAAAATATTGTGGTAAGGCGAGTCGAAGACGTTGAACCCCATCTCCCCCGTGCCGAACCGCCTTACTGAGTCCTTCGCCGCATAGTCGGCGGTGGCGTTGACGAGCATGCCGGAAAAGGCGTCGTACACGGCCGACGCATAGTCGCCGGAGGTGTTGACGAGCTGACCGGAGGTGGCGTCGAACACTGCCATCCTCCCCGTGCTGACGTTGTTGTAGTTCCAGGCGACGAACATGCCCCGGTTATCGGTGACGTTGGCGAGGATGTCCTGGTCGGAGTATCGGAGGATGCAGGGGTCGTTGAACAGGGTGGCGCGCCTGTTGAACGCGCAGAGCTGCTGCGCGGTGTCGAAGGCGGCGGCGAGGCAGGCGGCGCAGGAGGAGGCGTTGGTGTCGCCGCGGCAGAGCGCGATGGCGTACACCTTGTCCGGCGCCGTGCCGGCTGCGCCCTCGGCGAAGAGGGCCCGGGAAGACGACGCGTTCGCGGGGAGGGCGCTGGCGAGCGCACGCACGTTCGCCTGGTAGGCGCTCCCCTCCGTGTAGTTGCCGGCGGTGGCGTTGCACAGCTGCCACGGCAGCGGCTGCGCTTCCGCGAGCGGCCCGTGGAGGAGCGCGAGGAGCAGGGCAACTGCGGCGAGGTTGTACCAAAAAGTAAGATGTAGTCGATGACCGGCCAT
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| CDS seq | ATGGCCGGTCATCGACTACATCTTACTTTTTGGTACAACCTCGCCGCAGTTGCCCTGCTCCTCGCGCTCCTCCACGGGCCGCTCGCGGAAGCGCAGCCGCTGCCGTGGCAGCTGTGCAACGCCACCGCCGGCAACTACACGGAGGGGAGCGCCTACCAGGCGAACGTGCGTGCGCTCGCCAGCGCCCTCCCCGCGAACGCGTCGTCTTCCCGGGCCCTCTTCGCCGAGGGCGCAGCCGGCACGGCGCCGGACAAGGTGTACGCCATCGCGCTCTGCCGCGGCGACACCAACGCCTCCTCCTGCGCCGCCTGCCTCGCCGCCGCCTTCGACACCGCGCAGCAGCTCTGCGCGTTCAACAGGCGCGCCACCCTGTTCAACGACCCCTGCATCCTCCGATACTCCGACCAGGACATCCTCGCCAACGTCACCGATAACCGGGGCATGTTCGTCGCCTGGAACTACAACAACGTCAGCACGGGGAGGATGGCAGTGTTCGACGCCACCTCCGGTCAGCTCGTCAACACCTCCGGCGACTATGCGTCGGCCGTGTACGACGCCTTTTCCGGCATGCTCGTCAACGCCACCGCCGACTATGCGGCGAAGGACTCAGTAAGGCGGTTCGGCACGGGGGAGATGGGGTTCAACGTCTTCGACTCGCCTTACCACAATATTTTCTCGCTGGCTCAGTGCACGCCGGACATGTCGGAGGCCGACTGCCGGAGCTGCCTCGGGGACATAATCAGGAGGATGATGCCCAAGTACTTCGTCGGGAAGCCCGGCGGCAGGGTCTTCGGCGTTCGGTGCAACTTCCGGTTTGAGGCGTACGAGTTCTTCTCCGGCCGGCCGCTGTTGCAGTTGTCGGGGCTGCCGCCCTCACCACCACCACCAGGGCTGTCCGCACCATCGGGGCTGCCGCCCTCACCGCCGGGGCTGCGGCCGGCAGCATCAGGTAATATTAATAATAGAGAAGGTGAGTTGCTGCTCGATCGCTGTGTCTTACTGTGGCTTGCACTCACCATCAAACGAACGTCAAAAATCGCACCTCCACTCCTTGTTCTTCGCCCGGCGAGCCCCGGAAACTACAGGGACGCTAGGTTTGATGTTGGCCTGTGGGGCAGCCATTAG
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| Protein seq | MAGHRLHLTFWYNLAAVALLLALLHGPLAEAQPLPWQLCNATAGNYTEGSAYQANVRALASALPANASSSRALFAEGAAGTAPDKVYAIALCRGDTNASSCAACLAAAFDTAQQLCAFNRRATLFNDPCILRYSDQDILANVTDNRGMFVAWNYNNVSTGRMAVFDATSGQLVNTSGDYASAVYDAFSGMLVNATADYAAKDSVRRFGTGEMGFNVFDSPYHNIFSLAQCTPDMSEADCRSCLGDIIRRMMPKYFVGKPGGRVFGVRCNFRFEAYEFFSGRPLLQLSGLPPSPPPPGLSAPSGLPPSPPGLRPAASGNINNREGELLLDRCVLLWLALTIKRTSKIAPPLLVLRPASPGNYRDARFDVGLWGSH |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0540600 | OsNip_07t0540600-00 | Chr07 | 21345784 | 21346908 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGGTCATCGACTACATCTTACTTTTTGGTACAACCTCGCCGCAGTTGCCCTGCTCCTCGCGCTCCTCCACGGGCCGCTCGCGGAAGCGCAGCCGCTGCCGTGGCAGCTGTGCAACGCCACCGCCGGCAACTACACGGAGGGGAGCGCCTACCAGGCGAACGTGCGTGCGCTCGCCAGCGCCCTCCCCGCGAACGCGTCGTCTTCCCGGGCCCTCTTCGCCGAGGGCGCAGCCGGCACGGCGCCGGACAAGGTGTACGCCATCGCGCTCTGCCGCGGCGACACCAACGCCTCCTCCTGCGCCGCCTGCCTCGCCGCCGCCTTCGACACCGCGCAGCAGCTCTGCGCGTTCAACAGGCGCGCCACCCTGTTCAACGACCCCTGCATCCTCCGATACTCCGACCAGGACATCCTCGCCAACGTCACCGATAACCGGGGCATGTTCGTCGCCTGGAACTACAACAACGTCAGCACGGGGAGGATGGCAGTGTTCGACGCCACCTCCGGTCAGCTCGTCAACACCTCCGGCGACTATGCGTCGGCCGTGTACGACGCCTTTTCCGGCATGCTCGTCAACGCCACCGCCGACTATGCGGCGAAGGACTCAGTAAGGCGGTTCGGCACGGGGGAGATGGGGTTCAACGTCTTCGACTCGCCTTACCACAATATTTTCTCGCTGGCTCAGTGCACGCCGGACATGTCGGAGGCCGACTGCCGGAGCTGCCTCGGGGACATAATCAGGAGGATGATGCCCAAGTACTTCGTCGGGAAGCCCGGCGGCAGGGTCTTCGGCGTTCGGTGCAACTTCCGGTTTGAGGCGTACGAGTTCTTCTCCGGCCGGCCGCTGTTGCAGTTGTCGGGGCTGCCGCCCTCACCACCACCACCAGGGCTGTCCGCACCATCGGGGCTGCCGCCCTCACCGCCGGGGCTGCGGCCGGCAGCATCAGGTAATATTAATAATAGAGAAGGTGAGTTGCTGCTCGATCGCTGTGTCTTACTGTGGCTTGCACTCACCATCAAACGAACGTCAAAAATCGCACCTCCACTCCTTGTTCTTCGCCCGGCGAGCCCCGGAAACTACAGGGACGCTAGGTTTGATGTTGGCCTGTGGGGCAGCCATTAG
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| Protein seq | MAGHRLHLTFWYNLAAVALLLALLHGPLAEAQPLPWQLCNATAGNYTEGSAYQANVRALASALPANASSSRALFAEGAAGTAPDKVYAIALCRGDTNASSCAACLAAAFDTAQQLCAFNRRATLFNDPCILRYSDQDILANVTDNRGMFVAWNYNNVSTGRMAVFDATSGQLVNTSGDYASAVYDAFSGMLVNATADYAAKDSVRRFGTGEMGFNVFDSPYHNIFSLAQCTPDMSEADCRSCLGDIIRRMMPKYFVGKPGGRVFGVRCNFRFEAYEFFSGRPLLQLSGLPPSPPPPGLSAPSGLPPSPPGLRPAASGNINNREGELLLDRCVLLWLALTIKRTSKIAPPLLVLRPASPGNYRDARFDVGLWGSH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.746912 | 0.487854 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35640 | RBH | 1.181353 | 0.328123 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0540600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018180 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018100 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018100 | RBH | 0.0 | 2.040474 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017990 | SBH | 0.061716 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018110 | RBH | 0.719370 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0349900 | SBH | 0.235188 | 0.4765125 | 0.032501 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018600 | RBH | 0.071886 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0360900 | SBH | 0.246369 | 1.443188 | 0.2153185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017860 | RBH | 0.031731 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018060 | SBH | 1.298271 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017890 | RBH | 2.921949 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018190 | SBH | 0.060956 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018030 | SBH | 0.188304 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017910 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017940 | RBH | 0.988412 | 0.0 | 0.0 |
