Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0507000 | OGI:07054300 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:19243399-19247632 | ||||||||
| Gene Symbol | OsPP2C62, PP2C62, OsPP95, PP95 | ||||||||||
| DNA seq | AATGAACCATCCACTGGAATTGTAGGGATAATATATGAACATGTCCCATTGGGGCATTCAACAATCGGCAATGTTCGACAAGACTAACCAGAATATTCAACAAAAGTAACAACACTGAAACCATCAGATGGTAGCAATTGTACACTTGTATGAGACTCTGTTTCTGCTAGCAGAGGAATTTTACAACGATGCAGGAGATGTCGTCTTTGCTTTTCCGGTTCACGGCCTGCTCCGTCAGATGCTTCGCAGCTGCCTGAGCATCCTTGAAGTCCTTGATTTCATCCACCGCCTCTTGGTTGGACATCACCTGGATATGTATGATCTTGAAATTATAATCGTTGCATATGATAAAAGAACGTCGCTAATGCAACTTAGCAGCTCATTAAGGCTGGGAACCCCTCCTCCCCGGCACGCAAAACGGAGCACGTACTATTGCACAATTAATTATGTATTAACTTTTTTTTTGAAAAATGGATTAATATAATTTTTTAAAACAACTTTCGTATAGAAATTTTTTACAAAAAAACACACCGTTTAGCAGTTTGAAAAGCATGCACGTGGAAAACGAGCGAGGTGAGTTGGGAAAACTAGCATAAAAAGAGTAAAGAACTCAACTAAAACAAAAAAAAAAACAATCATGCAATAGTCATAGATGCAGCTTAAGAAAATAGAAAAATCAAGGTTCGCAACTCATGAGTCAGGATGTGCTTATGCATGCCAAATTACATACTTCATTCATCCCAAAATATAAGCATTTTTAGAATAGTGCCAAATCAAACTTTTTAAATGTTGACTATTAATAGCAAAATAATGAAAAAGATCAATCATGTAAATTTGATATTGCTAGATTTATCATTAAACAAACTATCATAATATGCAACTCTTTTTATTTAAAACATATTACTTTTATAGACATTGTTGGTCAAAGTAGCATCTCGAAGACCGTGTAGATATCTAAAAATGCTTATATTTTGGGACGGAGGAAGTAGCTGAAATGTAGGAATAAGCACTTTCACCTGTTAGACAAAACTCAACCTCCAGTACCTCATGTTCAAAATTAAATAATGTAGTGCATGCATGTATGCATATTCTGAGATTTGGTGTGTATATAGAATTAAATAAGGTAGGACATGGTCTCCAGTTTGTTGAGCTTAGGTTAGGTATGCATATAGAATGCAAAACAATAAATTTAGGTGTAATCTATCATGGATGGTTGGTATGAGCTTTATAGGCATCACCTTCCATAATCCATCACTTGCAAGAATTAGAAAATCAGTATTCTCGTCTATAGGTTCCTCCACCACATCTGGCTCTGAGCTGAGGTGCTTCTTTAGGCTCCGGTCTCCAAATGCCCTTGCAACCGCAAGCTGACCATCAACACGCGGTACATCTCCTGCAAGTAAAAAATTTTTGGAATTGAAGCTCGATAGATTGCATCTCATATGTTGTGACAGTAACAGCATAGAAGCAGTTAAGAGTAGGGTCTGTGTACGCCACTGCTGGTAATTACTAATGCAATATTGGCATAGGTATGCTTAGTGTTAGGGTGTATCCTGGACCTAGGATCTGATGCAATGTCAACCAATGAAACGGGCTCAAATAGATGGGCAGTATTGAGGGCCACATGGCTAGTATATAGTCATACAAGGACATAAATCCAAATAAGAAAGCAGTGTGGAACTAAACATTAGATACACTAGATTAGCAAACAAAAAAACCTCAGTAAAAAACATCTATAACTTTAAACTGTTAATTACAATGACTAAACCCCCCCCCAAAAAAAAAAAAAAAGGAAAAAGAGTTGACAAGAAATGGTCATTTACCTGGTAAGTTTGAAACAAAGCCACCTTTTTTCTCGATTGAATGCCGCTCCTTGTTTGGTTCATGATCAACCGAAAGCTGTTTTGCTACACCACTCTTGCTAATAACTGCTCGTGAATCTCCAACATTTGCAACTACTAGGTTCACAGAATTTTCACTGCTTATTAATATGGCAGTAACAGCAGTGGAGCCTCCTCTGCCCAACTCAGCTGCGCTTTCCAATATTTTTGCATCCGTAAGTTGATATGCATTTCGAATTGCAGCTTGTGGGTTGCTCAAGAATTCTGGCTGAGGTTGAAGGAGTCAATAAATAATCAGCACAGTTGTGAATTCAGTTGACTATCTTCAATTGCATAGACATTATCTATATATTTAGGTCACTCCATAGTTATTCCTAGCATGGTTCTTGCAAGTAGATTGTAGAACAAGCACAGATAACACTTGTAAGCGTAACAGAAGTACAACTCTTCTTACCCTGTTTATAGTTTACCATATGCATTATAGATTGACTTGCTCTTTCTGTGTTTTTGAGGATAAGTATAATACCTAAAAGAAAAAGAGTAGTGATGCTGGTGGTAAATCGCCACCCCACTAACTCCGCCTTGTTTTTCTTTTCTCAAAATGCTTCCTACATTTCTTTAATATTATGCAATCTTCATTCCATATATTCTAATTCCATTTTTTTAAACCTTCTAAACTCAGAATTTAACACATAAAAGTACATAGCGAATGGGTTATTTTTACTGTAAGTACAGACACTGTCAGATGCTCCTTAAAACGACAAAAAAAATGAATGACACAACTATTTATTGTGAACAGCATTAGAACTTGGATGGTTCATTTTTATCCATAGTAAATCAAAGGACATGTAGCTAGTAAAAATACAATATTGGAACAATTGACGCATGATGACAAAACAATCTTACTATCTGAGCATGTAGGCAATGCAGCAAGTATTGAGGCTAAGCCTATTAACAGGACATTGAATTTGAAATATTACCTGCTTTAAGATATTATCAAAGAGATGTGAGCGCAGGAAGTCTGGAACAGTGTGGCCCAAATGCCCATCAAATATTGCAAACAGCCCCAGATCATGCTCTCCTTCTTGCCTGTACTCTGCCACTAGATAGTCCTCCATCGGATGATTTGATTTTCCCTTCACAAGATGGTAACCATGCTTGACACGCTTGCCTGACAATTTTGTTTTTCCTTTCCCTGTTTCTGGTCCTGACGAACTAAAAGCATCTTTCACCTGTTAAACAAAACATAATCGTTCGTCAAGCATGTTAAGTTGCTAATAGTACAACACTAAGCAAAGCAAATATATAAGCTTGCGGAAAACATCCAGCACAATGGAGCAAAAAAACAGTTTTCGCTTTTTTGACATTGGTTGCATCACAGCAAGAATAAACACAAAGAAGGTGCATAAGGTAGTCTACCAAAATGAATTTAGTCTGGATTTAGTGATGTGTGTATTCTACATTGAGTAGAGTATAACATTTCAAGATAACTTCTAGTTTCCAGGCTGCAAACTCTAAAACTCCCAAGGAACAACGTCAATCAAACGAGTTCTTGAGTTCCAAAAGCTTTCATAAAAAAGAATATCCAAAAAAATCTAAGCATAAAATAAAATTCATGCTTAACCGGCAAAAGCCGGAGATCGTGTTCTTGAAGTTTTATGGTGAAATGGACCAGATTCCCATAACCAACATATTGAAATGCTTGTCTCTCTACTGGTCTAGACGAGTTATGTTTTGTTTCCTCAGTAGTTATTTTCTCCACTGATACATGTTTCCTGCTTCTGCTAGTAGGAACGAGAAACATGATAACTCCAAGAATCTAACGTCAACACGGAGTTTCATGGCATCGGGACTCATTATGTTTATAGAACCACAAACCATTGGATTGTCGTAATTAAGCAACAGATTTGGCCCAAAATAAATAAATAGACACCATAGCCTAGCATCATTCCAAGATTTTTAAGACATGTTCAGACTTCTAGCCTTCGCCATTTCAAGATCCCCTCAAGCTAATATGAAAAGGAAAAGATTCGACACAACGGTGCACCTAAATATTACCCCAAAAATAGCACAGGAATAGCAAAAAAATAAAAAAAAACAATAAACATGAAAGGGAAATGGAGGCCAAAGGAAGAACAAACAAGAATCCCCATCCTCCAGTCCTCCATTACTCAGTACCTTGTCCTTCATCTTGTGGTAGATTTCCTTGCCAGCCATTGTTTCCCTCTTACAAAACCTCCAATTCCGACTTCTTTAGCCTCAAATTCAACAAGCACCAACCCGGACAGCAGCAGCAGCAGAAAGATGGTCCCTTTCTTGAAAATTCAGAGCCCTCCCTCCCCCTTCTGCACCTCTCTGCACCACAACCAAACTTCCCTTTCTTGGATCAGTCT
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| CDS seq | ATGGCTGGCAAGGAAATCTACCACAAGATGAAGGACAAGGTGAAAGATGCTTTTAGTTCGTCAGGACCAGAAACAGGGAAAGGAAAAACAAAATTGTCAGGCAAGCGTGTCAAGCATGGTTACCATCTTGTGAAGGGAAAATCAAATCATCCGATGGAGGACTATCTAGTGGCAGAGTACAGGCAAGAAGGAGAGCATGATCTGGGGCTGTTTGCAATATTTGATGGGCATTTGGGCCACACTGTTCCAGACTTCCTGCGCTCACATCTCTTTGATAATATCTTAAAGCAGCCAGAATTCTTGAGCAACCCACAAGCTGCAATTCGAAATGCATATCAACTTACGGATGCAAAAATATTGGAAAGCGCAGCTGAGTTGGGCAGAGGAGGCTCCACTGCTGTTACTGCCATATTAATAAGCAGTGAAAATTCTGTGAACCTAGTAGTTGCAAATGTTGGAGATTCACGAGCAGTTATTAGCAAGAGTGGTGTAGCAAAACAGCTTTCGGTTGATCATGAACCAAACAAGGAGCGGCATTCAATCGAGAAAAAAGGTGGCTTTGTTTCAAACTTACCAGGAGATGTACCGCGTGTTGATGGTCAGCTTGCGGTTGCAAGGGCATTTGGAGACCGGAGCCTAAAGAAGCACCTCAGCTCAGAGCCAGATGTGGTGGAGGAACCTATAGACGAGAATACTGATTTTCTAATTCTTGCAAGTGATGGATTATGGAAGGTGATGTCCAACCAAGAGGCGGTGGATGAAATCAAGGACTTCAAGGATGCTCAGGCAGCTGCGAAGCATCTGACGGAGCAGGCCGTGAACCGGAAAAGCAAAGACGACATCTCCTGCATCGTTGTAAAATTCCTCTGCTAG
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| Protein seq | MAGKEIYHKMKDKVKDAFSSSGPETGKGKTKLSGKRVKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLFDNILKQPEFLSNPQAAIRNAYQLTDAKILESAAELGRGGSTAVTAILISSENSVNLVVANVGDSRAVISKSGVAKQLSVDHEPNKERHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNRKSKDDISCIVVKFLC |
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| Function | Probable protein phosphatase 2C 62 [UniProtKB/Swiss-Prot:Q0D673] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0507000 | OsNip_07t0507000-01 | Chr07 | 19243399 | 19247632 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTGGCAAGGAAATCTACCACAAGATGAAGGACAAGGTGAAAGATGCTTTTAGTTCGTCAGGACCAGAAACAGGGAAAGGAAAAACAAAATTGTCAGGCAAGCGTGTCAAGCATGGTTACCATCTTGTGAAGGGAAAATCAAATCATCCGATGGAGGACTATCTAGTGGCAGAGTACAGGCAAGAAGGAGAGCATGATCTGGGGCTGTTTGCAATATTTGATGGGCATTTGGGCCACACTGTTCCAGACTTCCTGCGCTCACATCTCTTTGATAATATCTTAAAGCAGCCAGAATTCTTGAGCAACCCACAAGCTGCAATTCGAAATGCATATCAACTTACGGATGCAAAAATATTGGAAAGCGCAGCTGAGTTGGGCAGAGGAGGCTCCACTGCTGTTACTGCCATATTAATAAGCAGTGAAAATTCTGTGAACCTAGTAGTTGCAAATGTTGGAGATTCACGAGCAGTTATTAGCAAGAGTGGTGTAGCAAAACAGCTTTCGGTTGATCATGAACCAAACAAGGAGCGGCATTCAATCGAGAAAAAAGGTGGCTTTGTTTCAAACTTACCAGGAGATGTACCGCGTGTTGATGGTCAGCTTGCGGTTGCAAGGGCATTTGGAGACCGGAGCCTAAAGAAGCACCTCAGCTCAGAGCCAGATGTGGTGGAGGAACCTATAGACGAGAATACTGATTTTCTAATTCTTGCAAGTGATGGATTATGGAAGGTGATGTCCAACCAAGAGGCGGTGGATGAAATCAAGGACTTCAAGGATGCTCAGGCAGCTGCGAAGCATCTGACGGAGCAGGCCGTGAACCGGAAAAGCAAAGACGACATCTCCTGCATCGTTGTAAAATTCCTCTGCTAG
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| Protein seq | MAGKEIYHKMKDKVKDAFSSSGPETGKGKTKLSGKRVKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLFDNILKQPEFLSNPQAAIRNAYQLTDAKILESAAELGRGGSTAVTAILISSENSVNLVVANVGDSRAVISKSGVAKQLSVDHEPNKERHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNRKSKDDISCIVVKFLC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.736072 | 0.957238 | 8.715029 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g32380 | RBH | 0.432521 | 0.604025 | 1.867407 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0507000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0016170 | RBH | 1.336437 | 87.872185 | 11.618567 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0016100 | RBH | 0.356553 | 9.715945 | 3.801539 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0016060 | RBH | 3.262864 | 76.897064 | 15.096580 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015990 | RBH | 0.841569 | 2.375982 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0016050 | RBH | 31.348021 | 88.473854 | 52.208656 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0318300 | RBH | 18.1839105 | 52.6604045 | 79.888958 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0016520 | RBH | 0.238285 | 3.437143 | 2.128900 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0331300 | RBH | 21.6031695 | 62.039442 | 32.2090985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0015790 | RBH | 0.000000 | 1.029619 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015960 | RBH | 0.484439 | 35.366310 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015960 | RBH | 16.797562 | 42.057819 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016220 | RBH | 1.713793 | 4.716776 | 2.422915 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015990 | RBH | 0.811223 | 21.084146 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015960 | RBH | 0.745590 | 16.033205 | 3.905143 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015890 | RBH | 1.778044 | 194.745316 | 12.724761 |
