Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0489500 | OGI:07051650 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:18133350-18135622 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTTCAGCATTCAGCAGGGGCTTCAGACTTAACAAAAACCTCAAATAACACAGATACGGTACTAAATTACTAGATAATAAATAATTTAGTTATTCGGCTATGCATGACGATACGCGATACGTCCCCATATATAGAACAATGAGTCTGCATGCAAGCTTAGCAATGGCAAATTGTGGTCTCAAACAGAAAGCTTGGATACCAGCTTCTTCTTTGGCCTCAGCTGAAAAGCAATAATGTTGGAAAAATACGCGTCAAAATAGTTAACAAATATTCAACGGGATTAGCTATATATTTATCGTTAAATTTTAACTAAAAAATTTGACAAATATAAATATAGTACAATCATGATATTATTATATTGTAATTTGCATGTAATTATAGTGAAACATCTATGTAACTTTCAAAAATCCTTAAGTGACATGCTAATTCCGTAAAAACAAAGATAATTGTACCGAATCCACTCACATGTGCGTGGATTATGATTTTTACCTATCTCCCTTGCATGAATTCTAAAGCAAATTAAACGGTAGTTACATGTAAATTAAACGATTGTACTCTATGCAAAATCGTATAGGGAATTTTCAGGGACGGATGGAGCTAGATGGGGACGTGCTAGTGGGAAACTTTTGAACCTAATTACTTATAAAAGTAATTTAAGTATCTTTTGAGATTAATCTTATTGTCTTCATGTTACTAAGGTAATATTTTAAAACTTTACAAAGATTGACATCAGTTTTATCCAAACAATTAGCAATAATTATTTTCAACCTAGAGGCCGGGAGTATTCAAAAGTGCAACATGCATAAAGTTATATATATACATCTGATGAAAAGGTTCGACTACATCTCTTTAATACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTTCCACAATTATATGAATGAATGCGGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGGAGTACATTTCTATAATTTGGGTCATGACCAAAAAAGACAAACATTACAGGTGATATCTAATTATCTATATATATCAAACGGCCAAAATAAAATAGAACATGGATCTTAGATATCACTACTAAGTGTACTACTACACTAACTAACTAATCTAAGAACATGAATATAATTCAAGTGCGCGTTGATCAATACGAAAGTTACTTTCCGGAATCAAAATGCACCATAAAAAACACAAGGATAGAGATGATCACCTCGTTGGTGTGGCCGCATTTCTTCTTGCGACAGTTGGTAGCCTTGTAGGGAAGGCGCGCGTAGCACCTGCATATATAGACGCAAGATCAAAATGAAAATTAAACATGGAGATTGAATGGGCGATCGATTTCAGTTAACAATATTTGTGAATATATATATAATCCATCAATTGATCAATCGAGGACGTACTTGCGGCAGATCATCTTCTTCTCCATCTTGCTGCGGGCGAGGGCGAGGAGGTTGGGCTCGATCATCGGGTAGCCCGGGCGGCCGCCGCCGCGGAGGCGAAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATCCCTGCAAATTAATAATATAACACATGAATAACATCATTTAATCAGATATCCTTCGATCCAGCAGAAAGCTAGTGAATTGAAAAAAAAAACAGAGAGAAAAGAAATTAAGAAACAGGCGAGGGATCGAACATGCATGGAATATATGATGAAATTAAAATGGATGGGTAGATGTTAATTGTTGTGGGTATATATATATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGCAGAGACGTGGATCTCGCAAGGCAGTGGTACTAACAAACTTTTGGCTAATTCGATATCGGTGGTGTGGCAACAAGTGTGTGGCGCGGCCTGTGGATGAGATGAGCTGATGATCGAGAGTTTTTATAGGGTTACGAGAGACAAGCAAAACCCTAGCTGCGCAGGCGCAGGAGGAGGAAGAGGCGGGCGGCGGCGGAACGGTTGCCGGATTAATCGAGTGCATGCATGGCATCATCGGCGAGATCAGCGGCCACACGTACCCCGCGCGCGTTGGATCGGATCGGATCGGATCCCCCTGCAACTGCAATTCTTGCATGGCCGCATGTTGCAT
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| CDS seq | ATGCAACATGCGGCCATGCAAGAATTGCAGTTGCAGGGGGATCCGATCCGATCCGATCCAACGCGCGCGGGGTACGTGTGGCCGCTGATCTCGCCGATGATGCCATGCATGCACTCGATTAATCCGGCAACCGTTCCGCCGCCGCCCGCCTCTTCCTCCTCCTGCGCCTGCGCAGCTAGGGTTTTGCTTGTCTCTCGTAACCCTATAAAAACTCTCGATCATCAGCTCATCTCATCCACAGGCCGCGCCACACACTTGTTGCCACACCACCGATATCGAATTAGCCAAAAGTTTGTTAGTACCACTGCCTTGCGAGATCCACGTCTCTGCAAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGGACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTTCGCCTCCGCGGCGGCGGCCGCCCGGGCTACCCGATGATCGAGCCCAACCTCCTCGCCCTCGCCCGCAGCAAGATGGAGAAGAAGATGATCTGCCGCAAGTGCTACGCGCGCCTTCCCTACAAGGCTACCAACTGTCGCAAGAAGAAATGCGGCCACACCAACGAGGTGATCATCTCTATCCTTGTGTTTTTTATGGTGCATTTTGATTCCGGAAAGTAA
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| Protein seq | MQHAAMQELQLQGDPIRSDPTRAGYVWPLISPMMPCMHSINPATVPPPPASSSSCACAARVLLVSRNPIKTLDHQLISSTGRATHLLPHHRYRISQKFVSTTALRDPRLCKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGRPGYPMIEPNLLALARSKMEKKMICRKCYARLPYKATNCRKKKCGHTNEVIISILVFFMVHFDSGK |
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| Function | Ubiquitin-60S ribosomal protein L40 [UniProtKB/Swiss-Prot:P51423] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0489500 | OsNip_07t0489500-00 | Chr07 | 18134538 | 18135622 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAACATGCGGCCATGCAAGAATTGCAGTTGCAGGGGGATCCGATCCGATCCGATCCAACGCGCGCGGGGTACGTGTGGCCGCTGATCTCGCCGATGATGCCATGCATGCACTCGATTAATCCGGCAACCGTTCCGCCGCCGCCCGCCTCTTCCTCCTCCTGCGCCTGCGCAGCTAGGGTTTTGCTTGTCTCTCGTAACCCTATAAAAACTCTCGATCATCAGCTCATCTCATCCACAGGCCGCGCCACACACTTGTTGCCACACCACCGATATCGAATTAGCCAAAAGTTTGTTAGTACCACTGCCTTGCGAGATCCACGTCTCTGCAAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGGACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTTCGCCTCCGCGGCGGCGGCCGCCCGGGCTACCCGATGATCGAGCCCAACCTCCTCGCCCTCGCCCGCAGCAAGATGGAGAAGAAGATGATCTGCCGCAAGTGCTACGCGCGCCTTCCCTACAAGGCTACCAACTGTCGCAAGAAGAAATGCGGCCACACCAACGAGGTGATCATCTCTATCCTTGTGTTTTTTATGGTGCATTTTGATTCCGGAAAGTAA
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| Protein seq | MQHAAMQELQLQGDPIRSDPTRAGYVWPLISPMMPCMHSINPATVPPPPASSSSCACAARVLLVSRNPIKTLDHQLISSTGRATHLLPHHRYRISQKFVSTTALRDPRLCKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGRPGYPMIEPNLLALARSKMEKKMICRKCYARLPYKATNCRKKKCGHTNEVIISILVFFMVHFDSGK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0489500 | OsNip_07t0489500-01 | Chr07 | 18133350 | 18135388 | - | IsoSeq | ||
| CDS seq | ATGCGGCCACACCAACGAGCTGAGGCCAAAGAAGAAGCTGGTATCCAAGCTTTCTGTTTGAGACCACAATTTGCCATTGCTAAGCTTGCATGCAGACTCATTGTTCTATATATGGGGACGTATCGCGTATCGTCATGCATAGCC |
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| Protein seq | MRPHQRAEAKEEAGIQAFCLRPQFAIAKLACRLIVLYMGTYRVSSCIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 10.487438 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0628100 | SBH | 18.763294 | 19.687611 | 56.471085 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g30640 | RBH | 0.0 | 0.0 | 2.784428 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0489500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015200 | RBH | 0.0 | 0.0 | 23.481327 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0015030 | RBH | 0.0 | 0.0 | 10.992863 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015020 | RBH | 0.0 | 0.0 | 40.432232 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0014960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0014950 | RBH | 0.0 | 0.0 | 93.035408 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0302200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0015470 | RBH | 0.0 | 0.0 | 6.013024 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0312200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0014790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0014940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0014930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0015750 | SBH | 1.089079 | 1.743386 | 1.720531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0014970 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G014950 | RBH | 0.0 | 0.0 | 2.052982 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0014810 | RBH | 0.0 | 0.0 | 53.426586 |
