Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0485600 | OGI:07050890 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:17851215-17852160 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGGTGTCAAAGGTTTAAAAAAAACCCCGGGTATTATCATCTGGTCAAACTTTTGTAAGACCTGAATTTTCAGATCAACGACTAGCACATGCAGAAGCAGACTTCCCTATGAAAACTGCGCCTGAAATGAAGTACTGTCATATAGCCTAACCTAGTCATACAATTCATAACAATATAGGATTAGAGGTTGCCTAAAAACTAATCAACAGCAGCCTAGCTAATGTCACAGAATGACAGCACGGAAAAACAGGGCCACATGTTCCAAGCAAAAAACAACATCGCAGTCGATAGCACAACAGGTTACAGGTGAGCCCAACGGATGCTTCGTTTCAGTGGATGCACAGCTTTCTTGCCGAGTGGAGCAGACAGACATGCTCTGATACCTTCTCTCTTGTGCCTACTTGGGTTTATCTGTAAGGCTGACGAGGGATTTCACGATGCCGGGGCTGATTCTGTCTGCAAGGGCACCTTTCTCTGATATCACAAACGATTTCTCCTTCACAAAGCTCTGTAGCTTCTTGGTGTCATAGTCTAGTCGTTCTTGATCTGCATCATTATGAAAATGAAGACAATGAGTTAATTTGACAAAAGAACAAGTTATGCTCCTAGATGACACAACCGCAAGTGAATAATTTTTTTTTAATCCTTGCTGCACTTTAAAATGGACAATAGAGGCCTTCCTCAACAGTATTGAAAATAGATCAAGAGTGTACCTTTGTCTAGAACAGTGTGGGCCACATGAAATGGAACACGAGCAAAGATATCTGATCCTGGAAACATTAACCATGTATCTTCCTTGGGGTCATGATCTCCACATGTTGGGCATATCTCCTTTACCAGCTGCTTGCCAGAGGTTCCTTCCAACCCTTTCATTATGATTTCAAAGGGGGTCGGAACACTAGTTTTGGTTGTCTTGGCTCTTTTCCGGAGGGCTGTCAGTGCTTCC
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| CDS seq | GAAGCACTGACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAATCATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAACATGTGGAGATCATGACCCCAAGGAAGATACATGGTTAATGTTTCCAGGATCAGATATCTTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAGAAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACAGATAAACCCAAGTAG |
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| Protein seq | EALTALRKRAKTTKTSVPTPFEIIMKGLEGTSGKQLVKEICPTCGDHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDTKKLQSFVKEKSFVISEKGALADRISPGIVKSLVSLTDKPK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0485600 | OsNip_07t0485600-01 | Chr07 | 17851215 | 17852160 | - | RAP2018-11-26 | ||
| CDS seq | GAAGCACTGACAGCCCTCCGGAAAAGAGCCAAGACAACCAAAACTAGTGTTCCGACCCCCTTTGAAATCATAATGAAAGGGTTGGAAGGAACCTCTGGCAAGCAGCTGGTAAAGGAGATATGCCCAACATGTGGAGATCATGACCCCAAGGAAGATACATGGTTAATGTTTCCAGGATCAGATATCTTTGCTCGTGTTCCATTTCATGTGGCCCACACTGTTCTAGACAAAGATCAAGAACGACTAGACTATGACACCAAGAAGCTACAGAGCTTTGTGAAGGAGAAATCGTTTGTGATATCAGAGAAAGGTGCCCTTGCAGACAGAATCAGCCCCGGCATCGTGAAATCCCTCGTCAGCCTTACAGATAAACCCAAGTAG
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| Protein seq | EALTALRKRAKTTKTSVPTPFEIIMKGLEGTSGKQLVKEICPTCGDHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDTKKLQSFVKEKSFVISEKGALADRISPGIVKSLVSLTDKPK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.027175 | 1.285625 | 1.532007 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0535333 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g30220 | RBH | 1.360880 | 0.625242 | 0.253476 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0485600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015050 | RBH | 0.921054 | 1.958308 | 3.313024 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0014880 | RBH | 0.175137 | 0.863088 | 0.927184 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0014870 | RBH | 1.546567 | 0.0 | 4.039535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0014810 | RBH | 0.0 | 0.036225 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0014770 | RBH | 8.582535 | 9.376585 | 6.801624 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0298400 | RBH | 4.2521235 | 6.2097945 | 5.3328405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0015280 | RBH | 0.531404 | 0.329760 | 0.338305 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0309100 | RBH | 6.9141975 | 8.4946765 | 18.453598 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0014600 | RBH | 0.122849 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0014750 | RBH | 0.000000 | 5.486936 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0014750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0014940 | RBH | 0.348395 | 0.0 | 0.784145 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0014800 | RBH | 0.000000 | 1.878871 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G014740 | RBH | 0.217861 | 2.048879 | 1.551394 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0014640 | RBH | 0.702279 | 4.425061 | 0.992951 |
