Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0413300 | OGI:07037070 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:12989631-12995232 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGTGTTAGCTTGTCGTTTCCGTCGTTTCAAAGGTTCGCGAGTGCGTCGGAAGTGTCCAAGAAGATTAATTGAAGACCGATTATTGCAAGGCAAGTCACACAGATCCTAAACACAATTCCTTTGAGCATGTTGATCCTATATTTAAATTCTCTATTTATTTCAACTGTGCATTTATTTTGGAATGTCACCGGGTGGTGTGAACCTATTCCTTTTTTATGACCACTCTGCATTGCTTACTCTATTCTTTGATACCTTGGGTGATAATTTGACTAGTTGGACTTATATATTTGTTCAGCTAGATATTAGATATAATTGCTTAGCCATGCTTAGAAACATTAGCACACAATTGGGATAACTAATGTTTCACTATTACTTAATGATGGATATTTAATGCTAGCTCACGATGGTCAATCGTGATTGTGAATTAATTAACTGCCAAATAAAACTTGATAATGGTGGGTTGTGAGCACATGGTTTTGATGGTCGTGCTCATGACAATTAAGGACCGGTTCACGAATTTCGGTTGTGAAACATTAACCGTACCAACCACAAGCCAGCATGGGCAACGACTTTACCTTTGTATAGCATGGTTCATTGCGGGGCACCAGACTGAGAAGTGGCGGAGATAAGCCCACGGGGGTCGCTGGGAAGTCCATGCCTTGTTTATAAGGGGGTGATTATGATCCAGGAATGGTGCGCTGTGGTGGATTGTGTTGTGCGAAGGGTACTGTCACAGCTCCTTTCCGAGGTACCATGGTGGTATTGAGGCGCATGGTGACATGTTGTGGGGCTGTGTCTTGTGGGTACAGTGGTATACCTCTGGCCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGGGTCTAACAATGTCTTTCGTGATTAGTCTCACACTTCTCACTATAATAAATGATGCTATAACTGGTAATAATTTGATTAGCTCCTGGTTTGGAATGGTACATTCCTGGTTTGGAGATAGATCTGTATAGCCAGGTATGGTTGTTCAGGATGGTTGGGCCTGAGCAGCATGGGTGTGCTGTTCAGTGTTGATTAAAAGTTATTGATTAATTACTCTTCTGTTTTAATACCCCTAAATGTTTGCTAAATGCTGCTTTTGCAAATGAGCCCTATATTATGCCATCATTTGGTATCCTTGTGCACTTGCATATTTGCTGTGTGGCTTGCGGAGTATTCCATGTACTCACTTTACAATAATCAATCAAACCTCAGTTGAAGACAAGTTGCGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGACCATTAATTCCGCTACTGTTTTCTTTTCTTTTGTAAGTATGTAACGTTATTATTATGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTAGACGAAGGTTTTTTGTACAAATAAGTTCGGAAATTACTAGTGAATTTCCGGGCGTGACACTAGGAATCACCTTCAAGGACTTGCTCAATTCAGAGAGATGCTTGACGGATTTCCTCAATTTAGACGTTTGTTCTTCAATAGCCCTAGGGAAATCGGCACGCTTCAAGCTCAGCTACTAGTTCGGCCTCCCTGGTTTTTAGCCGATCTATGTTCACTTGAGTAGAGCCTAGCCCGACGATCATCTCATCAAGCTTGACTTTTTTTTCATTAATGAAGAGCCGATTAGCTTCGATTGTTGCTTCCAGTTTAGCTCTCTCGCGCATGTCTGCTATTCTTTGTTGTGCCCTTTCCAGCTTGAAACGATGTTGCTCTAGATATACAGCCAGGGAAATGATGTCGGCTTCATCTTCTGGGATCTGGTGGTGGATCTCTTCAAACCTGGCCCTGATTGACCCGCAGCCAGTAACCAAGGAATCCAAGGAACTCCCTAGCCGTTGAGCAATATCCATGAGTTTGGTCTTGAGATCATCATCAAGAGGGACCAAGGCTCCACTGGTGGTTTCCTCTTCTTCTTCATCTAGGAACTGTTTAACGTCAAAGGAAAACATATTGGCCAAGACCTGGAGAAAAGATAAATCGGGATTATTGGCAAAGAAAATATCGCAGCCGATATGAGAAGATTTAATAGTACTAACAGGCACAACAAGAGGTGGATGTTCTGGTGTTCCCAAGTGATGACTGTCCACAGCCGACGGGGTGTGCTCACTAGATGCTAGCCGACGAGGAGATGGAGATCGAGGAGGCTGAGGCAAAAAGGGGAGGAGATTAAGTTTTTGTGGCAACTAATAGGAGTAAGAACACAAGTTTAAGGTTACCAATGGAGGCGGAGTGGATTTCTTCTTCTTAGCAGCCCTTGGCTTCTTCGTCTGCTGGAAAAATGGCAATAAATTCATATGATGCACACTTAATCGGATGATAATGTGAAGAAAGATGCATACCACCACTTTTAGGGGCCGGTGTTGGAGCATCTGGCGTCTTGTTGGGACTTGGTGTACCAGCTGGAGGTGTCCCAGCTCGACCCGTAGGGCTTGCGGATAAGGCCCTGGTGTCACTCATGCCAGCAGCAGCATTATCAATGGCCTCCTCTATTTCTTCATTCTCCAGGACCTCCTCTACATCACGATCCAAAGGAGGTAGATCATCGGCAGCAAACTTTTGCTTCTTTGCTACCTTTTTCGAGGCGGCAGGAGGTTTAGCAGCCGATGGCTTGACATCCGATTGCTTAGTGCTTTTCCTTTTACAAGTTTCAACTGGAATCGGTTCATGAGTTTGCCCATATAGTAAATTAGTTGTCTTGGGGGCCATATAGCCGATCACTGAAGGAGCTAGTCCACCACCATTTGGGATAATCCCTGCAGCATAGTTAATCGGCTTCCCACTTTGGCTAGTGTAAGGCAGTGAGGAATCTGTGGTCTGCGAACAAGGAAAAGAGATCAAGTATCGATTAAACATTTGCTCAAGGTTAGAATTTTTCAAAAAGAAAAGTGTACCTGAGGCATCGAGTCCGAGAAGATTATCGTGAAGAACATTGAGGCTGATAGATGGAATAAATGCTTCTTCCACTCAGCCCACCATCGATCGAAGAGTGTGCTCCTGTCACGCCCGAAAATTCACTAGTAATTTCTAAACTTATTTGTGCATAAAATCCTCGTATAGGAATCAGCTGACGTGCACAAACTGATAATTTAATATACAAATCCATCGTAATAATAACATTACATACTTACAAAAGAAAAGAAAACAGCAGCGGATTAACGGTCTAGCGATGGCTTTAGCTCCACTCCCACAGGCAGCTCAACTGGGGTATAAGCCAAACGTCTTCTCCTTCGCAACTTCCTCAATTGAGGTTTGATTGATTATTGCAAGGTGAGTACATGGAATACTCCGCATGCCACACAGCAAATATGCAAGTGCACAAGGATACCAAAGGATGGCATAATATAGGGCTTATTTGCAAAAGCAGCATTTAGCAAATATTTGAGAATAGTAAAACAGTAGAGTAATTAATCATCAATATTAATCAACACTGTACAGCACACCCATGCTGCACAGGCCCAACCATCCTTAACAACCATACCCGGCTGTACAGATCTAACTCCAAACCAGGAATGTACCATTCCAAACCAGGATCTAAGCAAATTATTACCAGTTATAGCATCAGTGTGAGACTAATCACGAAAACATTGTTAGACCCGCCCATAACTACGGGCAAGGCTATTCGAATAGTTTTACTCTGGCCAGAGATGTATCAATGTATCACTGTACCCACAAGACAGCCCCACAACACGTTGCCAATGTATCACTGTACCCACAAGACAGCCCCACAACACGTTGCCATGCGCCTCAATACCACCACGATACCTCGGAAAGGAGCTGTGACAGTACCCCTCGCATAACACAATCCACCACAACGCACCGTTCCTGGATCATAATCACCCCCTCAATTACCAGAGGCATGGACTCCCCAGCGACCCCCACGGACTTCTCGCCACTTCACAGTCTGGCGCCCCATAATGAATTATACTATACAAAAGGAAATGCCGTTACCCATGCTAGCTTGTGGTTGGCATGGTTAATGTTTCACAACAGTAGCTCGCGAACCGATCCTTAATTGTCATGAGCACGACCATCAAAACTATACGCTCACAACCCACCATTATCAAGTTTTAATTATCAATTGATTATCATAACACGATTTATCATCGTGAGCTACCTTTAAATATCCAGCTTTAGGTAATAGTGAAGCTTTAGGCTGTGTTCGCATGTTCAGCTTGGGAACATAGTGCCTCCGCACGGAAAATGGAGCGATCCATTAGCGTATGATTAATTAAGTATTAGCTATTTTTTTTCAAAAATGGATTAATTTGATTTTTTTAAGCAACTTTCGTATAGAAACTTTTTGCAAAAAACACATTGTTTAGTAGTTTGAAAAACGTGCGCTCGGAAAACGGAAAACGATGGAGAGGGGCTGGGAACATGGGGTTGCAAACACAGCCACACTAATGTTTCTAAGCATATCTAAGTAACTATACTAATATATCTAATTGAACCATTATATGAGGCCAACTAGTCAAATTGTATCCCAAGGTATCAAGGAATAAGGTAATCAATGCAAATTGGCCGTAGCAAAGGTATAAGTTCACACCACCGGTGACATTCGAAAATAAATACACAGTTGAAATAAATAGAGAATTTAAATATAGGATCAACATGCTCAAAGGAGTTGTGTTTGGGATCTATGTGACTTGCCTTGCAATAATCGGTCTTCAATTAATCTTCTTGAACACTTCCGACGCACTCACGAATCTTCGCAACAACGGAAACGATGAGCTAATACACAAAACGAGGAAAAAGACTAAGAAACTCCAAATAAACAGTACATATAAACTAAATAAACATGTAGATCATGATTTTAGATGAATTTAGAGACTTAAACAGCCTTATTCTGACTTCATATGATTTAGTTATGAATTTTACAAGATTAATCTGATTTTAGCCTTATATACAGAAAAGGATTTACGATTTATCTTAGAAAAGGAAAACGGGCGCTGACGTCAGCGATGATGTCATCACGGACAGGGGCTTCCAACGATCGCCGGCGATCTAGGGCTCGGCGGCGCAAATCGAGGATACCGGAAGAAAGAGCACGACGACGGGAGCTCACCGAGGGGCGGCACGACGACGAACGACAACGGAAGACGGCCGGCGGCGAGGTAGAGGCGGCGATGAGATCGGGACGGCGGCGACGGCGGCTTTCCGACAACGAGCGGCGGCAACGGAGGGGTGGCCGGGGTGCAGCTCCTCCTTTCGAACCCAACGGAGGTGGCGACGAAGCTGGGCGACGACGGGAGGAGCAGCGGGGCTTCGCCGAAGATCAAAACGCGACGGCGAACTCGGCCTTAACGGCGACGAAGGGCTTCCCGGGGTCTTCGGCTTCGGGCAGATGGTGGCCGGTCTTCCACTCTTCGCTTTGGTCCCATTGGAGGCGACGGCGCTGACCGGAGATGTCGGAGTCGACGGCTACGACCGACTGGAGCGGCGGCCGGCGGCGGAGCGAGGAGACGAGCGCGGGCAGGCGGCTAAGGTTAGGGAAAAGCTCTGGAAAAAGATAGA
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| CDS seq | ATGCTCCAACACCGGCCCCTAAAAGTGGTGCAGACGAAGAAGCCAAGGGCTGCTAAGAAGAAGAAATCCACTCCGCCTCCATTGCCTCCTCGATCTCCATCTCCTCGTCGGCTAGCATCTAGTGAGCACACCCCGTCGGCTGTGGACAGTCATCACTTGGGAACACCAGAACATCCACCTCTTGTTGTGCCTGTCTTGGCCAATATGTTTTCCTTTGACGTTAAACAGTTCCTAGATGAAGAAGAAGAGGAAACCACCAGTGGAGCCTTGGTCCCTCTTGATGATGATCTCAAGACCAAACTCATGGATATTGCTCAACGGCTAGGGAGTTCCTTGGATTCCTTGGTTACTGGCTGCGGGTCAATCAGGGCCAGGTTTGAAGAGATCCACCACCAGATCCCAGAAGATGAAGCCGACATCATTTCCCTGGCTGTATATCTAGAGCAACATCGTTTCAAGCTGGAAAGGGCACAACAAAGAATAGCAGACATGCGCGAGAGAGCTAAACTGGAAGCAACAATCGAAGCTAATCGGCTCTTCATTAATGAAAAAAAAGTCAAGCTTGATGAGATGATCGTCGGGCTAGGCTCTACTCAAGTGAACATAGATCGGCTAAAAACCAGGGAGGCCGAACTAGTAGCTGAGCTTGAAGCGTGCCGATTTCCCTAG
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| Protein seq | MLQHRPLKVVQTKKPRAAKKKKSTPPPLPPRSPSPRRLASSEHTPSAVDSHHLGTPEHPPLVVPVLANMFSFDVKQFLDEEEEETTSGALVPLDDDLKTKLMDIAQRLGSSLDSLVTGCGSIRARFEEIHHQIPEDEADIISLAVYLEQHRFKLERAQQRIADMRERAKLEATIEANRLFINEKKVKLDEMIVGLGSTQVNIDRLKTREAELVAELEACRFP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0413300 | OsNip_07t0413300-01 | Chr07 | 12989631 | 12995232 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTCCAACACCGGCCCCTAAAAGTGGTGCAGACGAAGAAGCCAAGGGCTGCTAAGAAGAAGAAATCCACTCCGCCTCCATTGCCTCCTCGATCTCCATCTCCTCGTCGGCTAGCATCTAGTGAGCACACCCCGTCGGCTGTGGACAGTCATCACTTGGGAACACCAGAACATCCACCTCTTGTTGTGCCTGTCTTGGCCAATATGTTTTCCTTTGACGTTAAACAGTTCCTAGATGAAGAAGAAGAGGAAACCACCAGTGGAGCCTTGGTCCCTCTTGATGATGATCTCAAGACCAAACTCATGGATATTGCTCAACGGCTAGGGAGTTCCTTGGATTCCTTGGTTACTGGCTGCGGGTCAATCAGGGCCAGGTTTGAAGAGATCCACCACCAGATCCCAGAAGATGAAGCCGACATCATTTCCCTGGCTGTATATCTAGAGCAACATCGTTTCAAGCTGGAAAGGGCACAACAAAGAATAGCAGACATGCGCGAGAGAGCTAAACTGGAAGCAACAATCGAAGCTAATCGGCTCTTCATTAATGAAAAAAAAGTCAAGCTTGATGAGATGATCGTCGGGCTAGGCTCTACTCAAGTGAACATAGATCGGCTAAAAACCAGGGAGGCCGAACTAGTAGCTGAGCTTGAAGCGTGCCGATTTCCCTAG
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| Protein seq | MLQHRPLKVVQTKKPRAAKKKKSTPPPLPPRSPSPRRLASSEHTPSAVDSHHLGTPEHPPLVVPVLANMFSFDVKQFLDEEEEETTSGALVPLDDDLKTKLMDIAQRLGSSLDSLVTGCGSIRARFEEIHHQIPEDEADIISLAVYLEQHRFKLERAQQRIADMRERAKLEATIEANRLFINEKKVKLDEMIVGLGSTQVNIDRLKTREAELVAELEACRFP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0413300 | OsNip_07t0413300-02 | Chr07 | 12991150 | 12995231 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTCCAACACCGGCCCCTAAAAGTGGTGACGAAGAAGCCAAGGGCTGCTAAGAAGAAGAAATCCACTCCGCCTCCATTGCCTCCTCGATCTCCATCTCCTCGTCGGCTAGCATCTAGTGAGCACACCCCGTCGGCTGTGGACAGTCATCACTTGGGAACACCAGAACATCCACCTCTTGTTGTGCCTGTCTTGGCCAATATGTTTTCCTTTGACGTTAAACAGTTCCTAGATGAAGAAGAAGAGGAAACCACCAGTGGAGCCTTGGTCCCTCTTGATGATGATCTCAAGACCAAACTCATGGATATTGCTCAACGGCTAGGGAGTTCCTTGGATTCCTTGGTTACTGGCTGCGGGTCAATCAGGGCCAGGTTTGAAGAGATCCACCACCAGATCCCAGAAGATGAAGCCGACATCATTTCCCTGGCTGTATATCTAGAGCAACATCGTTTCAAGCTGGAAAGGGCACAACAAAGAATAGCAGACATGCGCGAGAGAGCTAAACTGGAAGCAACAATCGAAGCTAATCGGCTCTTCATTAATGAAAAAAAAGTCAAGCTTGATGAGATGATCGTCGGGCTAGGCTCTACTCAAGTGAACATAGATCGGCTAAAAACCAGGGAGGCCGAACTAGTAGCTGAGCTTGAAGCGTGCCGATTTCCCTAG
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| Protein seq | MLQHRPLKVVTKKPRAAKKKKSTPPPLPPRSPSPRRLASSEHTPSAVDSHHLGTPEHPPLVVPVLANMFSFDVKQFLDEEEEETTSGALVPLDDDLKTKLMDIAQRLGSSLDSLVTGCGSIRARFEEIHHQIPEDEADIISLAVYLEQHRFKLERAQQRIADMRERAKLEATIEANRLFINEKKVKLDEMIVGLGSTQVNIDRLKTREAELVAELEACRFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 12991985 | 12992058 | - | OsNip_07t0413300-01 | OsNip_07t0413300-02,OsNip_07t0413300-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.558010 | 0.656368 | 0.142370 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g23030 | RBH | 0.551593 | 0.511710 | 0.075008 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0413300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0221000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0224500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
