Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0302100 | OGI:07035150 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:11948206-11949101 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGTCACAAACCTAGCTCAGATTTTGCAAGGCGGACGTAGAGCTCCTGGCCACCGTCGACGAACCCCGTGTCCATCAAGTCGCCGAACCACTGTATGCACCCGCTCCCGCCGCCGCGGATGTCGGCGCCGGCGTACGCCGTGCAGGAGCAGTTGGACAGGCACCTCCAGCGGCACCCCTCATGAGTCACCGTGGCATCCACGGCGCAGCCGTGCGTCTCCGGCAGCTTCACGCCGCGTAGGAGGTAGAACCCGTCCTCGCCTCCACCTCCGCTGCTGCCAGTGCACTGCAGCGGCGTCCTCTGGCCGCACCCGCCGGACGTGTTCCGCATGTACCACTCCGCCGGCGAGCGCGGTGTGAAGCCCCTGATGCAGCCGCAGACGGTGGCGTCGACGACGTTGCAGACGCCGAACGCGCCGCACCTGCCGTAGTTGTCGCACTGGTCCCTCGGCCCCGACCAGAAGTTACTCCACGACATCGCCGACCGGTCCCAGACCATGCGTTGCATGACGCCGGATTCGTTGAGGAGCACCCATGACATCGGCGAGCCGTCAAGGTTGCGGAACTGGTAGGAGACCTCGCCGCCGGTGGCGACCCTGAACTCGAACTCGAACATGTCCTCGAAGGTCGTCATCCACGGGCCCGTCCGGTACGTCTTCCGGCCTCGGCTCCACACGTGCAGCTCAGGTGAGCCGCTCGTGTCCGTACTGGAAGTCACTGGGCGACGGGTCTTTGGCGCCGCGCCACGACGAGAGCGACCACTCGGCGCCGGTCCGGAGGTCCTTCCCGACGCGTATCCCGGGGAGGAACGTGTTTGTCTGGTGCTCGAAGCTCTGCCACAGCACGTTGCCGTCCTTGTCCGTGAGCACCAGGTTGCCGGTGTCGAAAAGTGTGGAGA
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| CDS seq | TCTCCACACTTTTCGACACCGGCAACCTGGTGCTCACGGACAAGGACGGCAACGTGCTGTGGCAGAGCTTCGAGCACCAGACAAACACGTTCCTCCCCGGGATACGCGTCGGGAAGGACCTCCGGACCGGCGCCGAGTGGTCGCTCTCGTCGTGGCGCGGCGCCAAAGACCCGTCGCCCAGTGACTTCCAGTACGGACACGAGCGGCTCACCTGAGCTGCACGTGTGGAGCCGAGGCCGGAAGACGTACCGGACGGGCCCGTGGATGACGACCTTCGAGGACATGTTCGAGTTCGAGTTCAGGGTCGCCACCGGCGGCGAGGTCTCCTACCAGTTCCGCAACCTTGACGGCTCGCCGATGTCATGGGTGCTCCTCAACGAATCCGGCGTCATGCAACGCATGGTCTGGGACCGGTCGGCGATGTCGTGGAGTAACTTCTGGTCGGGGCCGAGGGACCAGTGCGACAACTACGGCAGGTGCGGCGCGTTCGGCGTCTGCAACGTCGTCGACGCCACCGTCTGCGGCTGCATCAGGGGCTTCACACCGCGCTCGCCGGCGGAGTGGTACATGCGGAACACGTCCGGCGGGTGCGGCCAGAGGACGCCGCTGCAGTGCACTGGCAGCAGCGGAGGTGGAGGCGAGGACGGGTTCTACCTCCTACGCGGCGTGAAGCTGCCGGAGACGCACGGCTGCGCCGTGGATGCCACGGTGACTCATGAGGGGTGCCGCTGGAGGTGCCTGTCCAACTGCTCCTGCACGGCGTACGCCGGCGCCGACATCCGCGGCGGCGGGAGCGGGTGCATACAGTGGTTCGGCGACTTGATGGACACGGGGTTCGTCGACGGTGGCCAGGAGCTCTACGTCCGCCTTGCAAAATCTGAGCTAGGTTTGTGA
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| Protein seq | SPHFSTPATWCSRTRTATCCGRASSTRQTRSSPGYASGRTSGPAPSGRSRRGAAPKTRRPVTSSTDTSGSPELHVWSRGRKTYRTGPWMTTFEDMFEFEFRVATGGEVSYQFRNLDGSPMSWVLLNESGVMQRMVWDRSAMSWSNFWSGPRDQCDNYGRCGAFGVCNVVDATVCGCIRGFTPRSPAEWYMRNTSGGCGQRTPLQCTGSSGGGGEDGFYLLRGVKLPETHGCAVDATVTHEGCRWRCLSNCSCTAYAGADIRGGGSGCIQWFGDLMDTGFVDGGQELYVRLAKSELGL |
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| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0302100 | OsNip_07t0302100-00 | Chr07 | 11948206 | 11949101 | - | RAP2018-11-26 | ||
| CDS seq | TCTCCACACTTTTCGACACCGGCAACCTGGTGCTCACGGACAAGGACGGCAACGTGCTGTGGCAGAGCTTCGAGCACCAGACAAACACGTTCCTCCCCGGGATACGCGTCGGGAAGGACCTCCGGACCGGCGCCGAGTGGTCGCTCTCGTCGTGGCGCGGCGCCAAAGACCCGTCGCCCAGTGACTTCCAGTACGGACACGAGCGGCTCACCTGAGCTGCACGTGTGGAGCCGAGGCCGGAAGACGTACCGGACGGGCCCGTGGATGACGACCTTCGAGGACATGTTCGAGTTCGAGTTCAGGGTCGCCACCGGCGGCGAGGTCTCCTACCAGTTCCGCAACCTTGACGGCTCGCCGATGTCATGGGTGCTCCTCAACGAATCCGGCGTCATGCAACGCATGGTCTGGGACCGGTCGGCGATGTCGTGGAGTAACTTCTGGTCGGGGCCGAGGGACCAGTGCGACAACTACGGCAGGTGCGGCGCGTTCGGCGTCTGCAACGTCGTCGACGCCACCGTCTGCGGCTGCATCAGGGGCTTCACACCGCGCTCGCCGGCGGAGTGGTACATGCGGAACACGTCCGGCGGGTGCGGCCAGAGGACGCCGCTGCAGTGCACTGGCAGCAGCGGAGGTGGAGGCGAGGACGGGTTCTACCTCCTACGCGGCGTGAAGCTGCCGGAGACGCACGGCTGCGCCGTGGATGCCACGGTGACTCATGAGGGGTGCCGCTGGAGGTGCCTGTCCAACTGCTCCTGCACGGCGTACGCCGGCGCCGACATCCGCGGCGGCGGGAGCGGGTGCATACAGTGGTTCGGCGACTTGATGGACACGGGGTTCGTCGACGGTGGCCAGGAGCTCTACGTCCGCCTTGCAAAATCTGAGCTAGGTTTGTGA
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| Protein seq | SPHFSTPATWCSRTRTATCCGRASSTRQTRSSPGYASGRTSGPAPSGRSRRGAAPKTRRPVTSSTDTSGSPELHVWSRGRKTYRTGPWMTTFEDMFEFEFRVATGGEVSYQFRNLDGSPMSWVLLNESGVMQRMVWDRSAMSWSNFWSGPRDQCDNYGRCGAFGVCNVVDATVCGCIRGFTPRSPAEWYMRNTSGGCGQRTPLQCTGSSGGGGEDGFYLLRGVKLPETHGCAVDATVTHEGCRWRCLSNCSCTAYAGADIRGGGSGCIQWFGDLMDTGFVDGGQELYVRLAKSELGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g20670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0302100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0011290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0011200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0011210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0011070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0011170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0212400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0011650 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0213800 | RBH | 0 | 0.0549585 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0011130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0011190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0011130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0011210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G011180 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0010960 | RBH | 0.0 | 0.0 | 0.0 |
