Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0276000 | OGI:07029590 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:10305762-10308372 | ||||||||
| Gene Symbol | OsFbox362, Os_F0439, Os_F0283 | ||||||||||
| DNA seq | GCATGACAGCTAAACTGCCATTGACAACAATTTTTTTAACAAGTATTATTACAACAGAAATTGGTAAAAAAATAAAAAAAGTAGTATCTGAGCGAAACAACTGCTCAATACATCAATCTTTTTCAACAATATTCAAAGGTATCTGAATGAAACAACAGCTCAATACATCAAACCTTGTTTCAACAACATCCAAAGGTATGTACAGCAATTAAGGCAAATCTACAACATGATCAATATAGATTTTCAGCTCAGTGACAGTATCCATCAGTCTTAAATTCAAAACGAGCAACTCTCCAAAGTCCTCTTTCCCAGTTGAACCATCTTACAATAATTCTACTCATCAGTCTCAACAGGTACATTCAAAAGGATCAGCAATAGACAAATCATGGACATCCTTGATATGCACCCAATCATAATAGCATTTCTTGGTTGTAAAATGAAAGTGAGCAGTTTTTGAAGCCCTTTTCTCAAACTCCAGCAGCTTTTGCTGTCGTGCAATAAAATATGCGTTACCATTGCTACGACCACCTGTAAATATCATATTCTCAAGCTTAGTCGCATTCCTTATGAAGAATGTGGCAAAGTTAATTTGTGATTTCAAGCCACGATAATTATCCAGCACTAATGTCTTCAGACATATGTCAAGGCTTTTGAGTTTTCTCCAATGTTTGCGGCGCCAGCAATAAGTTGCCCCATAATGGGATGCCTGAAAAAAGAAAAGGGAGGATAATGCAAGAACTTCAGATTAAATATCTTCTCGTTATGTAAGCTAACAAAATAAGTATAATAACACAATACATCAACAGAAAAAATATTTCACCGTGATGTACAATTTCTCCAAGCACTGAAAGCATCTCATTAACTCGATAACCCTGTCCAACCTGAGATTATCCCTGATGAGGGCTAAAATCTTGATGCTCGACACTGGTGTTGTGTAGTTAATAACCGCAAATCCCTATATTAATTATGGAACATGGCATTAGGACATTTGTAAATAATGTATATAGATTGACCATATTTTCTAGATAATGGATATTTCATGAAGTAATGAAATTATATCTGGCCTTTGCATCTAAAAAGGTTGCACACAGACCTAAAAAGAAAAAGAAAGGAACCCCAAAAAATACCATGAACATATCATATTATTGTTATAGCTTGCTAGTGACTCGGAGACAGTATAGTTTCTATGCCATAGACTCCAGAACAGTGACTTCCGGAACGAATTAGGATATGTTCATCAATGTTATCCGAGTAAAATTAATAGCATATTTATCCAGAGACATGTCTAGGATAATATATTTTTTTAGAGAATGGATTAAGACCTGGCCTTGAAACTTGATGTACATAGCTATGTTCTAACACAACATATAGATCAACAACATGAAGGATATATCATATATGCACATAGAAATTAATGTCCAATGCAGCTTGTAATCAATTCCTATAGATTGCTGGGAGTATGTAGGGATAAGGGGAAGCCACATCTATATACCTTAAAAACCACCTTGCCGAAATCGAGTCGGTAATAGCCGTCATCAAGGTCGTCTAGGACGCAGGCCTCCAGTTTGGGCGCCGCGATCACGGTTACATTAACGCCCAATCCCATTGCACGTTCAATATGGATCAACCTTTCAAGACATGGAGCATCCTCGATGACCACCTCTTCCAAGTGGAAACCCACCTTCCATACACAGTGATCTCCACAGCATGGGGAATGGAAGGCGACGCTTCTAATGGTAGGGGAATTGATGCGGAGGCATCGGAATCCGAAGGAACGTTTGAGCAGCAACCCCTCCAGTGCAGGGCAGCCGGCGATGATGCTATGGAGAGAATGCTCGGAGACGATGACTTCCTGGAGGGAGAGCAGCCTGAGCTGCGGGAACCGAAGCGCGAGGGTGGCTGTGCAGTCTGGGAGGCTGCATTGGCTAATGGCGGCGACACGGAGGGTGGCCGAGAAGCGGAAGGTGGACGGCGGGGGCGGGAGCAGCAAGAATGATCTCCCGTAGAAGGGGTCTTCCGGGACGGTGAACTCGAGCTCCTCCAGGTTTTTGAATCTCCGCGATCCGAGCCAGCCTTCGACCATGGCGGGGCGCTCGTGGATCTGCTGCGCGGGGATGCAGAAGCGGCGTACGGGCCCCGCGTGAACGAGGAGTATCTGGGTGACGAGGACGGCCAGCGCCGCCCCGTTGGCGTCGGGGGCGAGATCACCGGCGTCGAGGTTGAGCGGCGCGGTGCGCCAGACGGGGCGCCACCGTTTGGACAGGGCTCTGGTCTTCCCGCCGTCCTTGGTGGGAAGGCGCGAGATGATGTCGCCGAGGACGGCGTCGGGGAGGCGGCTGATGAGATCGAAGCCGACGTCCTCCTCGCCGTCTCCTCCCCGTCCGTCTCCGGCTCCAGGCGGCGGTGGAACATGGCTGCGACTGCGAGCCCTTCTCGGCTCGCGTGGTGGCGCTGCTTCCTTGCTCTTCCTCGCCTCCCTTCCCCTCTTCCTGGTGAGCGGCGGCGGCGGCGGCGGCGGATCGGTCGCGTCCATATCCAAGGGGAGCGCAGAGTCCGGAACACGCAGGTGAATGTGACTGTGTCGGTGGCGGCGTTGCCCTAGGTAGGCTGT
More
|
||||||||||
| CDS seq | ATGGACGCGACCGATCCGCCGCCGCCGCCGCCGCCGCTCACCAGGAAGAGGGGAAGGGAGGCGAGGAAGAGCAAGGAAGCAGCGCCACCACGCGAGCCGAGAAGGGCTCGCAGTCGCAGCCATGTTCCACCGCCGCCTGGAGCCGGAGACGGACGGGGAGGAGACGGCGAGGAGGACGTCGGCTTCGATCTCATCAGCCGCCTCCCCGACGCCGTCCTCGGCGACATCATCTCGCGCCTTCCCACCAAGGACGGCGGGAAGACCAGAGCCCTGTCCAAACGGTGGCGCCCCGTCTGGCGCACCGCGCCGCTCAACCTCGACGCCGGTGATCTCGCCCCCGACGCCAACGGGGCGGCGCTGGCCGTCCTCGTCACCCAGATACTCCTCGTTCACGCGGGGCCCGTACGCCGCTTCTGCATCCCCGCGCAGCAGATCCACGAGCGCCCCGCCATGGTCGAAGGCTGGCTCGGATCGCGGAGATTCAAAAACCTGGAGGAGCTCGAGTTCACCGTCCCGGAAGACCCCTTCTACGGGAGATCATTCTTGCTGCTCCCGCCCCCGCCGTCCACCTTCCGCTTCTCGGCCACCCTCCGTGTCGCCGCCATTAGCCAATGCAGCCTCCCAGACTGCACAGCCACCCTCGCGCTTCGGTTCCCGCAGCTCAGGCTGCTCTCCCTCCAGGAAGTCATCGTCTCCGAGCATTCTCTCCATAGCATCATCGCCGGCTGCCCTGCACTGGAGGGGTTGCTGCTCAAACGTTCCTTCGGATTCCGATGCCTCCGCATCAATTCCCCTACCATTAGAAGCGTCGCCTTCCATTCCCCATGCTGTGGAGATCACTGTGTATGGAAGGTGGGTTTCCACTTGGAAGAGGTGGTCATCGAGGATGCTCCATGTCTTGAAAGGTTGATCCATATTGAACGTGCAATGGGATTGGGCGTTAATGTAACCGTGATCGCGGCGCCCAAACTGGAGGCCTGCGTCCTAGACGACCTTGATGACGGCTATTACCGACTCGATTTCGGCAAGGTGGTTTTTAAGGGATTTGCGGTTATTAACTACACAACACCAGTGTCGAGCATCAAGATTTTAGCCCTCATCAGGGATAATCTCAGGTTGGACAGGGTTATCGAGTTAATGAGATGCTTTCAGTGCTTGGAGAAATTGTACATCACGGTGAAATATTTTTTCTGTTGA
More
|
||||||||||
| Protein seq | MDATDPPPPPPPLTRKRGREARKSKEAAPPREPRRARSRSHVPPPPGAGDGRGGDGEEDVGFDLISRLPDAVLGDIISRLPTKDGGKTRALSKRWRPVWRTAPLNLDAGDLAPDANGAALAVLVTQILLVHAGPVRRFCIPAQQIHERPAMVEGWLGSRRFKNLEELEFTVPEDPFYGRSFLLLPPPPSTFRFSATLRVAAISQCSLPDCTATLALRFPQLRLLSLQEVIVSEHSLHSIIAGCPALEGLLLKRSFGFRCLRINSPTIRSVAFHSPCCGDHCVWKVGFHLEEVVIEDAPCLERLIHIERAMGLGVNVTVIAAPKLEACVLDDLDDGYYRLDFGKVVFKGFAVINYTTPVSSIKILALIRDNLRLDRVIELMRCFQCLEKLYITVKYFFC |
||||||||||
| Function | F-box/FBD/LRR-repeat protein At4g00160 [UniProtKB/Swiss-Prot:Q8LF09] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0276000 | OsNip_07t0276000-01 | Chr07 | 10305762 | 10308372 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACGCGACCGATCCGCCGCCGCCGCCGCCGCCGCTCACCAGGAAGAGGGGAAGGGAGGCGAGGAAGAGCAAGGAAGCAGCGCCACCACGCGAGCCGAGAAGGGCTCGCAGTCGCAGCCATGTTCCACCGCCGCCTGGAGCCGGAGACGGACGGGGAGGAGACGGCGAGGAGGACGTCGGCTTCGATCTCATCAGCCGCCTCCCCGACGCCGTCCTCGGCGACATCATCTCGCGCCTTCCCACCAAGGACGGCGGGAAGACCAGAGCCCTGTCCAAACGGTGGCGCCCCGTCTGGCGCACCGCGCCGCTCAACCTCGACGCCGGTGATCTCGCCCCCGACGCCAACGGGGCGGCGCTGGCCGTCCTCGTCACCCAGATACTCCTCGTTCACGCGGGGCCCGTACGCCGCTTCTGCATCCCCGCGCAGCAGATCCACGAGCGCCCCGCCATGGTCGAAGGCTGGCTCGGATCGCGGAGATTCAAAAACCTGGAGGAGCTCGAGTTCACCGTCCCGGAAGACCCCTTCTACGGGAGATCATTCTTGCTGCTCCCGCCCCCGCCGTCCACCTTCCGCTTCTCGGCCACCCTCCGTGTCGCCGCCATTAGCCAATGCAGCCTCCCAGACTGCACAGCCACCCTCGCGCTTCGGTTCCCGCAGCTCAGGCTGCTCTCCCTCCAGGAAGTCATCGTCTCCGAGCATTCTCTCCATAGCATCATCGCCGGCTGCCCTGCACTGGAGGGGTTGCTGCTCAAACGTTCCTTCGGATTCCGATGCCTCCGCATCAATTCCCCTACCATTAGAAGCGTCGCCTTCCATTCCCCATGCTGTGGAGATCACTGTGTATGGAAGGTGGGTTTCCACTTGGAAGAGGTGGTCATCGAGGATGCTCCATGTCTTGAAAGGTTGATCCATATTGAACGTGCAATGGGATTGGGCGTTAATGTAACCGTGATCGCGGCGCCCAAACTGGAGGCCTGCGTCCTAGACGACCTTGATGACGGCTATTACCGACTCGATTTCGGCAAGGTGGTTTTTAAGGGATTTGCGGTTATTAACTACACAACACCAGTGTCGAGCATCAAGATTTTAGCCCTCATCAGGGATAATCTCAGGTTGGACAGGGTTATCGAGTTAATGAGATGCTTTCAGTGCTTGGAGAAATTGTACATCACGGTGAAATATTTTTTCTGTTGA
More
|
|||||||
| Protein seq | MDATDPPPPPPPLTRKRGREARKSKEAAPPREPRRARSRSHVPPPPGAGDGRGGDGEEDVGFDLISRLPDAVLGDIISRLPTKDGGKTRALSKRWRPVWRTAPLNLDAGDLAPDANGAALAVLVTQILLVHAGPVRRFCIPAQQIHERPAMVEGWLGSRRFKNLEELEFTVPEDPFYGRSFLLLPPPPSTFRFSATLRVAAISQCSLPDCTATLALRFPQLRLLSLQEVIVSEHSLHSIIAGCPALEGLLLKRSFGFRCLRINSPTIRSVAFHSPCCGDHCVWKVGFHLEEVVIEDAPCLERLIHIERAMGLGVNVTVIAAPKLEACVLDDLDDGYYRLDFGKVVFKGFAVINYTTPVSSIKILALIRDNLRLDRVIELMRCFQCLEKLYITVKYFFC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.599145 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g17460 | RBH | 0.0 | 0.0 | 0.154232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0276000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010260 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010540 | SBH | 0.000000 | 0.0 | 0.185273 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010200 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009990 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010070 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0181900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010520 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0178700 | RBH | 0.009076 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010000 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010320 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010170 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0009960 | RBH | 0.0 | 0.0 | 0.400876 |
