Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0274700 | OGI:07029830 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:10231836-10232644 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCGAAAATTCGGAAGCGCCAGAGGTCTCTCCTAGCCTCGCCTCGCCTTCTTGCGCCGCAAGAAGAAAAGCAGCAGCAAAGCAAGCCAGCCATGGCCGCCGCCGCTGCGTCCTCCGCCGCCTGGAAGAGGTGGATCCGCCCCGAGGTATGTAGTACTACGCGCGGCGCGCTCCGCCCTTCCTTGTATCGATCTCCCACGAGCGTGCTCTCCCGATCTGTCTGTTCGGCTTCCGATCGAGAGTCGACGAGATCTAGATTAATTCTCACGCTCTCCGCCATGTTTGGTTGCTGTGTGTAGGTGTACCCGCTCTTCCTCGCCACCGGCGTCGCCGTCTCCATCTGCGTCGGCCAGCTCGTCCGCAACATCACCGGCAACCCCGAAGTCAGGTAAGCACCCATGCGTATGCATCTTGGAGATGACGTGATCTGTGACGGGAACCAATCGTTTGCTTCGAGATGATGTGGTGGTGATTTGGGATGGGAAAAATCTGATGGATCTGTACCGGCCTGTAGGGTGTTGAAGGAGAAGAGGGCGGCCGGTGTGCTGGAGAACTTCGACGAGGGGAAGCGCTACTCGCAGCACGGCTTCAGGAAGTTCATCGACGGGAAGCGCCCCGAGATCATGCCCGGCATCAACAGCTTCTTCTCCGACCCGCCCAAGTACTAAGACCGTGTTGTTGGCTGGTGGGATTGATTGCCATATGCCACCGTTTTGCCGGAATTTCAATTCATATGCATGTTTCAACATGTTCGAATATTTGATTTGAGCGTATACAAATATTGGTCTCTGATCTGAATAATATTCATCA
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| CDS seq | ATGGCCGCCGCCGCTGCGTCCTCCGCCGCCTGGAAGAGGTGGATCCGCCCCGAGGTGTACCCGCTCTTCCTCGCCACCGGCGTCGCCGTCTCCATCTGCGTCGGCCAGCTCGTCCGCAACATCACCGGCAACCCCGAAGTCAGGGTGTTGAAGGAGAAGAGGGCGGCCGGTGTGCTGGAGAACTTCGACGAGGGGAAGCGCTACTCGCAGCACGGCTTCAGGAAGTTCATCGACGGGAAGCGCCCCGAGATCATGCCCGGCATCAACAGCTTCTTCTCCGACCCGCCCAAGTACTAA |
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| Protein seq | MAAAAASSAAWKRWIRPEVYPLFLATGVAVSICVGQLVRNITGNPEVRVLKEKRAAGVLENFDEGKRYSQHGFRKFIDGKRPEIMPGINSFFSDPPKY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0274700 | OsNip_07t0274700-01 | Chr07 | 10231836 | 10232644 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCGCCGCCGCTGCGTCCTCCGCCGCCTGGAAGAGGTGGATCCGCCCCGAGGTGTACCCGCTCTTCCTCGCCACCGGCGTCGCCGTCTCCATCTGCGTCGGCCAGCTCGTCCGCAACATCACCGGCAACCCCGAAGTCAGGGTGTTGAAGGAGAAGAGGGCGGCCGGTGTGCTGGAGAACTTCGACGAGGGGAAGCGCTACTCGCAGCACGGCTTCAGGAAGTTCATCGACGGGAAGCGCCCCGAGATCATGCCCGGCATCAACAGCTTCTTCTCCGACCCGCCCAAGTACTAA
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| Protein seq | MAAAAASSAAWKRWIRPEVYPLFLATGVAVSICVGQLVRNITGNPEVRVLKEKRAAGVLENFDEGKRYSQHGFRKFIDGKRPEIMPGINSFFSDPPKY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.198311 | 10.383561 | 15.926367 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0274400 | RBH | 0.0 | 0.0 | 16.742657 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g17330 | RBH | 3.184629 | 6.220871 | 3.789513 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0274700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010140 | RBH | 0.0 | 50.271160 | 12.935132 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010280 | RBH | 0.212691 | 13.854677 | 6.803816 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010080 | RBH | 0.504794 | 88.234024 | 34.952312 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009860 | RBH | 0.052249 | 1.477341 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010170 | RBH | 0.000000 | 57.919487 | 29.775061 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0183400 | SBH | 1.3906325 | 9.017098 | 0.3590695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010620 | RBH | 0.000000 | 4.517937 | 6.028810 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0180200 | SBH | 4.153999 | 8.4865345 | 0.3244565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010100 | RBH | 0.603395 | 0.513228 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010150 | RBH | 0.0 | 38.971642 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010100 | RBH | 5.681009 | 22.432806 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010210 | RBH | 0.0 | 2.833925 | 1.174538 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010080 | RBH | 0.050308 | 7.451454 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010050 | RBH | 0.0 | 11.316192 | 5.549485 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0009860 | RBH | 0.0 | 19.679884 | 8.353792 |
