Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0250900 | OGI:07024550 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:8382164-8383056 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCACAATCATCAGAGAATTGAATTGAATTGAATCAAACACCGCAATAGTGCAATTCCTTCAAATCCACCACAAATCCCGAGAGGAATTGAATCACAAACTGAACCAGAGGAACAAACAAACCAATCGCATAAATAATCACTAGCAAAGCTTAGGCACAGCCATGGCGACGCGCTAGCAGTTCTTGTCGGCGGCGGCGAGCTTGCACTTGACCTTCTGGAACACCACCGCCGGCGTGCCCGGCGGCGCGAGCTGCAGCTTGAGCGGGCACGTCGCGGCGAGCTTGCACTTGGTGTAGTGCGCCTGGTACCTGACCTCGCCGGTGACCGCCACCTCCACCTCGAACACCCCCGTCGCGTTCTCCTTCTTGAACTCGGCGACGCCGGCGTTCCCGAGCGCCGCGTATGCGTTGTCGCTGCTGGAGTCGAGGTGGTACACCCGCGTCTTCCCCGCCGGGTGCTTCTCCCCCTCGCCGGCGAGCTTGACGCGCTCGAACCGCTGCCCGTCGAAGCTGTACCCGGCCTCCAGGTCCTTGGTGTTCTTGATGCTCATGGCCCAGTTCTTGTTGCGGACGGCGAGCGTGAGCGAGAGGTTGTAGGCGAGAGCGGTGGCCTCCGACGGGGAGGAGAGGTTGAACCGCGTGAGGGACGCGGACTCGACGGTGATGGAGACGTGGCGGATGAAGCCGTAGGCGGCGAGGAGGACGGCGAGGAGGACGACGGCGGCGACGAGGAGGAGGCAGACGGCGCAGTAGAAGATGGTCTCCCGGGTGTCGTAGGAGACGCAGCCGCAGCAGCAGCGGTCGCAGCACGCGTCGTAGCACTCGTAGCACCCGCACTCGCAGCAGCAGCAGCACATGGCTGAGCTGAGCTCTGCGAGATTTGGATCTTGGAGT
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| CDS seq | ATGTGCTGCTGCTGCTGCGAGTGCGGGTGCTACGAGTGCTACGACGCGTGCTGCGACCGCTGCTGCTGCGGCTGCGTCTCCTACGACACCCGGGAGACCATCTTCTACTGCGCCGTCTGCCTCCTCCTCGTCGCCGCCGTCGTCCTCCTCGCCGTCCTCCTCGCCGCCTACGGCTTCATCCGCCACGTCTCCATCACCGTCGAGTCCGCGTCCCTCACGCGGTTCAACCTCTCCTCCCCGTCGGAGGCCACCGCTCTCGCCTACAACCTCTCGCTCACGCTCGCCGTCCGCAACAAGAACTGGGCCATGAGCATCAAGAACACCAAGGACCTGGAGGCCGGGTACAGCTTCGACGGGCAGCGGTTCGAGCGCGTCAAGCTCGCCGGCGAGGGGGAGAAGCACCCGGCGGGGAAGACGCGGGTGTACCACCTCGACTCCAGCAGCGACAACGCATACGCGGCGCTCGGGAACGCCGGCGTCGCCGAGTTCAAGAAGGAGAACGCGACGGGGGTGTTCGAGGTGGAGGTGGCGGTCACCGGCGAGGTCAGGTACCAGGCGCACTACACCAAGTGCAAGCTCGCCGCGACGTGCCCGCTCAAGCTGCAGCTCGCGCCGCCGGGCACGCCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGCCGCCGCCGACAAGAACTGCTAG
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| Protein seq | MCCCCCECGCYECYDACCDRCCCGCVSYDTRETIFYCAVCLLLVAAVVLLAVLLAAYGFIRHVSITVESASLTRFNLSSPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQRFERVKLAGEGEKHPAGKTRVYHLDSSSDNAYAALGNAGVAEFKKENATGVFEVEVAVTGEVRYQAHYTKCKLAATCPLKLQLAPPGTPAVVFQKVKCKLAAADKNC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0250900 | OsNip_07t0250900-01 | Chr07 | 8382164 | 8383056 | - | RAP2018-11-26 | ||
| CDS seq | ATGTGCTGCTGCTGCTGCGAGTGCGGGTGCTACGAGTGCTACGACGCGTGCTGCGACCGCTGCTGCTGCGGCTGCGTCTCCTACGACACCCGGGAGACCATCTTCTACTGCGCCGTCTGCCTCCTCCTCGTCGCCGCCGTCGTCCTCCTCGCCGTCCTCCTCGCCGCCTACGGCTTCATCCGCCACGTCTCCATCACCGTCGAGTCCGCGTCCCTCACGCGGTTCAACCTCTCCTCCCCGTCGGAGGCCACCGCTCTCGCCTACAACCTCTCGCTCACGCTCGCCGTCCGCAACAAGAACTGGGCCATGAGCATCAAGAACACCAAGGACCTGGAGGCCGGGTACAGCTTCGACGGGCAGCGGTTCGAGCGCGTCAAGCTCGCCGGCGAGGGGGAGAAGCACCCGGCGGGGAAGACGCGGGTGTACCACCTCGACTCCAGCAGCGACAACGCATACGCGGCGCTCGGGAACGCCGGCGTCGCCGAGTTCAAGAAGGAGAACGCGACGGGGGTGTTCGAGGTGGAGGTGGCGGTCACCGGCGAGGTCAGGTACCAGGCGCACTACACCAAGTGCAAGCTCGCCGCGACGTGCCCGCTCAAGCTGCAGCTCGCGCCGCCGGGCACGCCGGCGGTGGTGTTCCAGAAGGTCAAGTGCAAGCTCGCCGCCGCCGACAAGAACTGCTAG
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| Protein seq | MCCCCCECGCYECYDACCDRCCCGCVSYDTRETIFYCAVCLLLVAAVVLLAVLLAAYGFIRHVSITVESASLTRFNLSSPSEATALAYNLSLTLAVRNKNWAMSIKNTKDLEAGYSFDGQRFERVKLAGEGEKHPAGKTRVYHLDSSSDNAYAALGNAGVAEFKKENATGVFEVEVAVTGEVRYQAHYTKCKLAATCPLKLQLAPPGTPAVVFQKVKCKLAAADKNC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0250501 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g14700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0250900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009240 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0009080 | RBH | 0.0 | 2.133004 | 1.356757 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0008830 | RBH | 0.0 | 0.276642 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009010 | RBH | 0.0 | 8.508703 | 1.056487 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0147100 | RBH | 2.3195445 | 4.1253475 | 0.770939 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009490 | RBH | 0.0 | 0.234499 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0148100 | SBH | 0.423741 | 0.0334785 | 0.080203 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0008950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0008980 | RBH | 0.187849 | 3.111269 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008960 | RBH | 0.0 | 9.745497 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009000 | RBH | 0.0 | 1.468927 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G009000 | RBH | 0.0 | 3.681406 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0008910 | RBH | 0.0 | 4.196439 | 0.0 |
