Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0179400 | OGI:07012440 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:4185314-4188034 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAAAAAAATGTGTAAAATTGGTTAGTGCGGAAGTTCCCAGGAGCTAAGATTGAATTTGTACAACTATATCATTCAGAGTGAAGTAATACTTTTACAGGGCCCTGGAAGCTGGGACAAGTTTCAAACATAATTCCTCAAAAAGGTAACTAAAATACCACTTTCAGATTACTTGTTGAGACTATGGAGGATCATTCAGGATTTAGTAGAGTGAATTGCAGCTTGGACTGTCTCTTGTTACCATAGTTTCACTTTGAATCCGCTTTACCTTTTGCTTCACTTTGAACCCCCTTTTTCTTCTTCTCCAGCTCTGGAAATAGCATTATCTCCTAGGTCACACCACTTCCGCGGTTCTGCAGCCGCTGCCATAATACTGGCAGTGGATATGTGCCTGAGTTTGAGGAGAAGGGCAAAAAAAAAGGGGGGGGGGTGCAAAATGAAGCAAAAGGAAATAATAGGGGTCCAAAGTGAAATTATAGTAAGAAAAGGGGTCCAAAATGCAATTCACTCGATTTTAGTATACAGCCAACCAGAATCACTTTACTCCCTAAACAGCTAAACACCTTTAGATGCTGCTCCTTCTTGCTGATTAGCTTTCTCTGCTTCAAGCTTCCTTAAAGCAGATGAACTCAATTTCTCACCCTCTGCTCCTCCGGATAGAAGATCAACAACCTCAACCTGCAATTGAGCTCATCAATATTTGGATCACTATGAAGCATATCTTGTACTTGTACCAGGTTTTTTTTAAAAAAAAATAATTCTAGGGAGTATGAACACCACACCTTCAGCAAAGGTAGTCCTTTCTCTTCTCTTTTCCTATTTACGGCAAATCCACCATTTAATGTCTCCTTACTGAACATAAGCAGCATCACTAGGTTAAATGAGGAAAAACAAAAAGGAGAAAATTTAAAGTAAGCACGAACAACTCTACATTATTTAAGCATGGCATATTTCATACATTTTTAATATAGTTCCGTAGCTGTTTGATGAATGAATTTCAATTTTGGTCAGAACACATGCATGAAGTAATAAAGGGAAAAAAATTACAGAGACTTAATATCAGATAAGAGATGATCAAATTGTCCATACCTGACAATAATGGCATCCAACTTATCATCAATAATGGATGGGCCATAAGGATCCTCAATAGGCTCCACTTGTACTACCAGTTCTGGTTTAACAGACTGCATTTTATACAAAACCAATCATGAGCTTTCAACAAACATCATAATTGAGCATCCCAGAAGCAGCAGTTTCACTTTTGGCAGCTCCTCCTAAGTATGAACATGCTTAATTGGGTATGTACTTATGTGAAACTGATAACCCTTACAAGTTTTTTTTTCTTTTTTTTGCGGGGAATAACCCTTACAAGTTAAGAAGCATGCAATTCCAAAATTCTATATTTTTCTAAAATGTAGACGACTAGGAACAGGTCTTCAGTACAAGGAAGTTATGGAACAAATTTCGCAGCAAGTTGGTCCTAAATTGCCACATAACTCTTCACCAAACCAATTCACTGTATAACTTCTTATTACTCACCTAAAGTAATGTGCCACATGAGAGAAGCTAATTCTCATGCGCGAAATCTAAGGTTTACTGAATTGTCTTTGTACCAGAATAAATTATACACCGCCTCCCAAATCAACTGAAAATTACACCTTTGATTTCCTTCATTTTTGGAAGAGAAAAGATTCATCTTGTCACAACGTCTCACAAACAGCAATAAAAAGCAGCTCAGTAACTTAATTCATGCAAACTGCTTCCACTAGTCATCACCCAATGTTCCAATCCTTTGTAGGAGTATTTACTAACAGAAACTATATACTACATAATAAAGTAGGCAAGATTATCCCCCACCTTGATGTAATCCTCCACAGCCTTCATGCGCTTTTCGACGGGCTCGATCAACTCAGCGTACTGCAGGCACACACACAGAGGGTGGAAATCAAGAACACAACCAGCAGCTAGCATCACAGCTCCAATAACCGGTGAAAAATGGTGTGTCATTTCTACCTCTTTCTTGGCGAGCATGGGGCCTGTGCAGACGCCCACCACGATCCGATCCCTCGCCAAATCCGCCGAGGCCTACACACCCAACAAATCGAAAAATTCGTTATTCCTCAAAGAGGATTAATACTAAGCTCGGTTCTTTAGGAGGAAAATAAAAATAGAAATCCTCTTCTTTTTTTTTTCTCAAGCTCGCAGCACCGCACCTTGAGGAGGCGACGGTGGCCGTCGTGGAGGCGGTCGAAGGTGCCGCCGAGGACAACCGAGCCGTACGGCGGAGCATCCTCCTCCTGACTCGGCGGCGGCGGCGCTCCGGCGAAGGTGTCACCGGCGACGGGAGGAGTGATCATTTTCTTTTCCTACTTCAATCTGTCCACCTCTGCATGCTCTGTCCGGTGGAGTAAAGGTGGTCACCGGTGAATACGGGATCAGAGAGAGGCCCGGGGAGGAGGCGGCGGCGGCGGATCCGGCAGCGGGAGGCGCCGGAGACGAGGGAGAAGGGCGGTTTTGCGGGGGAACTGACCTCGCTGGAGGAAGAAATGGATGCGGGGCGGTGGGAAGGAGGAGGCCGGCAAGGGGAGCGGCGACGGCGAGCCGACGGGGTCTCTCCGGTGATGTGGGCTGAGGTTGCCGGCGATTGGCCGGCGGCGCGAGAGGAGGAAGAGGCGAAGAGCACTTTCTACTTTTGACTTTTACCCTTTATTTCGTTTGTTTATT
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| CDS seq | ATGATCACTCCTCCCGTCGCCGGTGACACCTTCGCCGGAGCGCCGCCGCCGCCGAGTCAGGAGGAGGATGCTCCGCCGTACGGCTCGGTTGTCCTCGGCGGCACCTTCGACCGCCTCCACGACGGCCACCGTCGCCTCCTCAAGGCCTCGGCGGATTTGGCGAGGGATCGGATCGTGGTGGGCGTCTGCACAGGCCCCATGCTCGCCAAGAAAGAGTACGCTGAGTTGATCGAGCCCGTCGAAAAGCGCATGAAGGCTGTGGAGGATTACATCAAGTCTGTTAAACCAGAACTGGTAGTACAAGTGGAGCCTATTGAGGATCCTTATGGCCCATCCATTATTGATGATAAGTTGGATGCCATTATTGTCAGTAAGGAGACATTAAATGGTGGATTTGCCGTAAATAGGAAAAGAGAAGAGAAAGGACTACCTTTGCTGAAGGTTGAGGTTGTTGATCTTCTATCCGGAGGAGCAGAGGGTGAGAAATTGAGTTCATCTGCTTTAAGGAAGCTTGAAGCAGAGAAAGCTAATCAGCAAGAAGGAGCAGCATCTAAAGGTGTTTAG
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| Protein seq | MITPPVAGDTFAGAPPPPSQEEDAPPYGSVVLGGTFDRLHDGHRRLLKASADLARDRIVVGVCTGPMLAKKEYAELIEPVEKRMKAVEDYIKSVKPELVVQVEPIEDPYGPSIIDDKLDAIIVSKETLNGGFAVNRKREEKGLPLLKVEVVDLLSGGAEGEKLSSSALRKLEAEKANQQEGAASKGV |
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| Function | Phosphopantetheine adenylyltransferase 1 [UniProtKB/Swiss-Prot:Q6ZLC4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0179400 | OsNip_07t0179400-01 | Chr07 | 4185365 | 4187968 | - | RAP2018-11-26 | ||
| CDS seq | ATGATCACTCCTCCCGTCGCCGGTGACACCTTCGCCGGAGCGCCGCCGCCGCCGAGTCAGGAGGAGGATGCTCCGCCGTACGGCTCGGTTGTCCTCGGCGGCACCTTCGACCGCCTCCACGACGGCCACCGTCGCCTCCTCAAGGCCTCGGCGGATTTGGCGAGGGATCGGATCGTGGTGGGCGTCTGCACAGGCCCCATGCTCGCCAAGAAAGAGTACGCTGAGTTGATCGAGCCCGTCGAAAAGCGCATGAAGGCTGTGGAGGATTACATCAAGTCTGTTAAACCAGAACTGGTAGTACAAGTGGAGCCTATTGAGGATCCTTATGGCCCATCCATTATTGATGATAAGTTGGATGCCATTATTGTCAGTAAGGAGACATTAAATGGTGGATTTGCCGTAAATAGGAAAAGAGAAGAGAAAGGACTACCTTTGCTGAAGGTTGAGGTTGTTGATCTTCTATCCGGAGGAGCAGAGGGTGAGAAATTGAGTTCATCTGCTTTAAGGAAGCTTGAAGCAGAGAAAGCTAATCAGCAAGAAGGAGCAGCATCTAAAGGTGTTTAG
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| Protein seq | MITPPVAGDTFAGAPPPPSQEEDAPPYGSVVLGGTFDRLHDGHRRLLKASADLARDRIVVGVCTGPMLAKKEYAELIEPVEKRMKAVEDYIKSVKPELVVQVEPIEDPYGPSIIDDKLDAIIVSKETLNGGFAVNRKREEKGLPLLKVEVVDLLSGGAEGEKLSSSALRKLEAEKANQQEGAASKGV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0179400 | OsNip_07t0179400-02 | Chr07 | 4185314 | 4188034 | - | IsoSeq | ||
| CDS seq | ATGCTCCGCCGTACGGCTCGGTTGTCCTCGGCGGCACCTTCGACCGCCTCCACGACGGCCACCGTCGCCTCCTCAAGGCCTCGGCGGATTTGGCGAGGGATCGGATCGTGGTGGGCGTCTGCACAGGCCCCATGCTCGCCAAGAAAGAGTACGCTG |
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| Protein seq | MLRRTARLSSAAPSTASTTATVASSRPRRIWRGIGSWWASAQAPCSPRKSTL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.708044 | 1.315773 | 2.466238 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08210 | RBH | 1.064668 | 0.787936 | 0.544392 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0179400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005010 | RBH | 0.679973 | 0.0 | 1.867357 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004970 | RBH | 0.551522 | 0.0 | 1.502235 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004870 | RBH | 1.770762 | 3.119512 | 5.541626 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004800 | RBH | 0.448114 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004910 | RBH | 4.679120 | 0.0 | 2.717876 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0069600 | SBH | 4.2124505 | 8.9194905 | 10.4578605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005430 | RBH | 0.061943 | 0.102687 | 0.578441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0072800 | RBH | 11.554138 | 15.494865 | 8.3121305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004890 | RBH | 0.053071 | 0.155423 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004910 | RBH | 0.348448 | 1.936566 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004950 | RBH | 8.371105 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005020 | RBH | 1.402621 | 0.617311 | 0.817471 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004880 | RBH | 0.613182 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005080 | RBH | 0.814114 | 0.0 | 0.771398 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004860 | RBH | 1.959527 | 4.592241 | 4.760497 |
