Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0176500 | OGI:07012140 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:4029361-4030853 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTAATTAACTACTATAGTATATACGAAAATACCCAACAAACAGACAAACAAACAATGATCAGTAAGTCACAAATATACTGTAATGTATCATGTACTCTTCCTACAAATCCCATTATTAATTACCAACCTCTCTGTGAAAAAGAAAAAGAAAACAAAAAAAGAGAAAAAAAATCCAAAGAGAATAAGAAGAAGAAAAAAAATTACAGTGTATATATATACGATGCTTGATTGAGTGATTGACTGATTTTTGTGTGTAGGAATAATTCACCAACGAATTTCACTTCTCGCCGGAGTTGCCGCCGCCGCCGCCGTCGGTTAGTAGTGGCCCGGCGGCGCGAAGCAGCCGTGGGCGTCGCAGTGCACCGGCGGGCGGTGGAGGAAGGCGAGGCACTGGTCGGCCGGGCGCTGGTCGGGCCTCCCGGCGATGCAGTTCTGGCGGTCGTCGACGCGGCGGAGGCGGAGGCACCGCTCCGGCTCGCCGCAGAAGTAGTTGTATGAGTAGGTGAAGTTCCTGAGCCGCGGCAGCGCGCAGATCCCCTCCGGGATGTGGCCGGCGAGCTCGTTGCGCGCGACGTCGAGCTGCTCCAGCGACCGCATCCACGCCATGGACTCCGGCAGCGTCCCCTGCAGCTGGTTGTTGCTGACGTCGAGCACGGTGAGCTCCCCGAGGTGGCCGATCTCCGGCGGGATGCAGGACCGCACGCCGGAGTTGAGCACGACGAGCTCGTTCAGCGTCGCCGCCATCCTCCCGACGCTGGAGGGGATGCAACCCCTCAGCTTGATGTTGGCGAGCACGATGACCGACGCCGGCGAGTTGCCGAGGTTGGCCGGGAGCTCGAAGTCGAAGTGGTTGTCGTTGAGGAAGAGCGCGTCGATCTTCTTGTCGAAGATCGCCGGCGGGACCTCGCCGCAGAAGTTGTTGAAGCGGAGGTCGACGTACTTGACGTTGGGGAGGCAGAGGATGTGGTCCGGGAAGCCGCCGGCGAGGCGGTTGTTGCTGACGTCGAGCTCGTGGAGGAGGGAGAGCTTGGGGAGGGTGTCGGGGAGCGCGCCGGAGAAGCGGTTGGAGTTGAGGTGGAGCACGGCGAGGTCGGTGAGGAGGCCGAGCTCGTCGGGGAGGGTGGCGGCGAGGTCGCCGTGGTTGAGGTCGATGCCGGCGACGGTGGCGGCGCACGGGTCGTCCGGCGCGGCGGCGCAGTAGACGCCGAAGTAGCGGCACACGTCGGGGCCGCACCACCCGCCGGTGAGGTTCTTGGGGTCGTCGGTGACGCGCCGCCGCAGCGCCTGCAGCGCCACGTACGCCCGCTGCAGCCGCGGGTTGTTCTCCGCCGTCTGGCTCGCCGCCGGCGGGCACGCCGAGCACAGCTGCGCCGCCGCCGACAGCAGCAGCAGCAGCAGCGCCGCCGCCGCCGGCAAGGTCGTCGTCGTCGTCGCCGTCGTCATGTGTCTCGCGGTTTTGCTGCTGCGTTGTCGCGTTTGTGTTTTTGTGATT
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| CDS seq | ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACGGCGGAGAACAACCCGCGGCTGCAGCGGGCGTACGTGGCGCTGCAGGCGCTGCGGCGGCGCGTCACCGACGACCCCAAGAACCTCACCGGCGGGTGGTGCGGCCCCGACGTGTGCCGCTACTTCGGCGTCTACTGCGCCGCCGCGCCGGACGACCCGTGCGCCGCCACCGTCGCCGGCATCGACCTCAACCACGGCGACCTCGCCGCCACCCTCCCCGACGAGCTCGGCCTCCTCACCGACCTCGCCGTGCTCCACCTCAACTCCAACCGCTTCTCCGGCGCGCTCCCCGACACCCTCCCCAAGCTCTCCCTCCTCCACGAGCTCGACGTCAGCAACAACCGCCTCGCCGGCGGCTTCCCGGACCACATCCTCTGCCTCCCCAACGTCAAGTACGTCGACCTCCGCTTCAACAACTTCTGCGGCGAGGTCCCGCCGGCGATCTTCGACAAGAAGATCGACGCGCTCTTCCTCAACGACAACCACTTCGACTTCGAGCTCCCGGCCAACCTCGGCAACTCGCCGGCGTCGGTCATCGTGCTCGCCAACATCAAGCTGAGGGGTTGCATCCCCTCCAGCGTCGGGAGGATGGCGGCGACGCTGAACGAGCTCGTCGTGCTCAACTCCGGCGTGCGGTCCTGCATCCCGCCGGAGATCGGCCACCTCGGGGAGCTCACCGTGCTCGACGTCAGCAACAACCAGCTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTTCCGGCGAGAAGTGAAATTCGTTGGTGA
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| Protein seq | MTTATTTTTLPAAAALLLLLLSAAAQLCSACPPAASQTAENNPRLQRAYVALQALRRRVTDDPKNLTGGWCGPDVCRYFGVYCAAAPDDPCAATVAGIDLNHGDLAATLPDELGLLTDLAVLHLNSNRFSGALPDTLPKLSLLHELDVSNNRLAGGFPDHILCLPNVKYVDLRFNNFCGEVPPAIFDKKIDALFLNDNHFDFELPANLGNSPASVIVLANIKLRGCIPSSVGRMAATLNELVVLNSGVRSCIPPEIGHLGELTVLDVSNNQLQGTLPESMAWMRSLEQLDVARNELAGHIPEGICALPRLRNFTYSYNYFPARSEIRW |
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| Function | Leucine-rich repeat extensin-like protein 6 [UniProtKB/Swiss-Prot:Q9LUI1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0176500 | OsNip_07t0176500-01 | Chr07 | 4029361 | 4030853 | - | RAP2018-11-26 | ||
| CDS seq | ATGACGACGGCGACGACGACGACGACCTTGCCGGCGGCGGCGGCGCTGCTGCTGCTGCTGCTGTCGGCGGCGGCGCAGCTGTGCTCGGCGTGCCCGCCGGCGGCGAGCCAGACGGCGGAGAACAACCCGCGGCTGCAGCGGGCGTACGTGGCGCTGCAGGCGCTGCGGCGGCGCGTCACCGACGACCCCAAGAACCTCACCGGCGGGTGGTGCGGCCCCGACGTGTGCCGCTACTTCGGCGTCTACTGCGCCGCCGCGCCGGACGACCCGTGCGCCGCCACCGTCGCCGGCATCGACCTCAACCACGGCGACCTCGCCGCCACCCTCCCCGACGAGCTCGGCCTCCTCACCGACCTCGCCGTGCTCCACCTCAACTCCAACCGCTTCTCCGGCGCGCTCCCCGACACCCTCCCCAAGCTCTCCCTCCTCCACGAGCTCGACGTCAGCAACAACCGCCTCGCCGGCGGCTTCCCGGACCACATCCTCTGCCTCCCCAACGTCAAGTACGTCGACCTCCGCTTCAACAACTTCTGCGGCGAGGTCCCGCCGGCGATCTTCGACAAGAAGATCGACGCGCTCTTCCTCAACGACAACCACTTCGACTTCGAGCTCCCGGCCAACCTCGGCAACTCGCCGGCGTCGGTCATCGTGCTCGCCAACATCAAGCTGAGGGGTTGCATCCCCTCCAGCGTCGGGAGGATGGCGGCGACGCTGAACGAGCTCGTCGTGCTCAACTCCGGCGTGCGGTCCTGCATCCCGCCGGAGATCGGCCACCTCGGGGAGCTCACCGTGCTCGACGTCAGCAACAACCAGCTGCAGGGGACGCTGCCGGAGTCCATGGCGTGGATGCGGTCGCTGGAGCAGCTCGACGTCGCGCGCAACGAGCTCGCCGGCCACATCCCGGAGGGGATCTGCGCGCTGCCGCGGCTCAGGAACTTCACCTACTCATACAACTACTTTCCGGCGAGAAGTGAAATTCGTTGGTGA
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| Protein seq | MTTATTTTTLPAAAALLLLLLSAAAQLCSACPPAASQTAENNPRLQRAYVALQALRRRVTDDPKNLTGGWCGPDVCRYFGVYCAAAPDDPCAATVAGIDLNHGDLAATLPDELGLLTDLAVLHLNSNRFSGALPDTLPKLSLLHELDVSNNRLAGGFPDHILCLPNVKYVDLRFNNFCGEVPPAIFDKKIDALFLNDNHFDFELPANLGNSPASVIVLANIKLRGCIPSSVGRMAATLNELVVLNSGVRSCIPPEIGHLGELTVLDVSNNQLQGTLPESMAWMRSLEQLDVARNELAGHIPEGICALPRLRNFTYSYNYFPARSEIRW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0176500 | OsNip_07t0176500-02 | Chr07 | 4029462 | 4030853 | - | IsoSeq | ||
| CDS seq | TCACAAAAACACAAACGCGACAACGCAGCAGCAAAACCGCGAGAC |
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| Protein seq | SQKHKRDNAAAKPRD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.681525 | 0.359735 | 4.623170 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0795300 | RBH | 0.000000 | 0.000000 | 0.423805 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07990 | RBH | 0.301707 | 0.206751 | 1.116552 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0176500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004830 | RBH | 0.0 | 36.425777 | 4.797819 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004790 | RBH | 0.0 | 27.712795 | 2.853070 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004680 | RBH | 0.0 | 50.142632 | 6.711880 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004620 | RBH | 0.0 | 1.957038 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004720 | RBH | 0.0 | 55.433559 | 5.533446 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0067400 | RBH | 4.598167 | 93.111904 | 1.8251035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005220 | RBH | 0.116363 | 3.614027 | 0.660364 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0070600 | RBH | 17.829913 | 118.0863915 | 3.182165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004710 | RBH | 0.100320 | 1.565372 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004700 | RBH | 0.0 | 36.804287 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004740 | RBH | 2.512246 | 70.409042 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0004820 | RBH | 0.268223 | 6.652339 | 0.706061 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004690 | RBH | 0.362834 | 47.852154 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G004890 | RBH | 0.096364 | 8.196388 | 1.056540 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0004670 | RBH | 0.0 | 61.559570 | 8.491079 |
