Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0152000 | OGI:07007830 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:2751213-2756586 | ||||||||
| Gene Symbol | TCP21, OsTCP21 | ||||||||||
| DNA seq | ATTTCAATTTTCCTTTTCCCCTCATAAAATCACTCTCCCTCTTCTCTCTTCCTCTTCTCCCCCCAAAAACCTCGCCTCCGCCCGATCGCCTCGCCGCCTTAACCCCCACCCCCGATCTCCTTCCTCACCGACGACGCGCGCCCCACTCCCCCCACCTCAATGCGCGCTTCCTAGGGCATATGACCGGTACTACGACAACCATCACCTCTCGCCGTCACCGTCATCGTCGGGATGGAGCTCGCCGGCAGCAACAACAAGCGGGGGAGGGTGAGGGGGCCCAACGACGACGACGACGACGCCGGGGAGCCGGACGCCAAGCGCCATCACCACCAGCTGCTGTTGCCGTGGCCGCAGCAGCAGCAGCAGCAGCATCCGGCGTCGCGGATCTACCGGGTGTCGCGGGCCTCCGGCGGGAAGGACCGCCACAGCAAGGTGTACACGGCCAAGGGCATCCGCGACCGCCGCGTCCGCCTCTCCGTCTCCACCGCCATCCAGTTCTACGACCTCCAGGATCGTCTCGGGTATGACCAGCCGAGCAAGGCCATCGAGTGGCTCATTAAGGCCGCCGCCGCCGCCATCGACAAGCTCCCTTCGCTTGATACCGCTTCCTTCCCCACCAACCCCGCCTCCTCCGCCGCTGTTGCTGCTGCTGCTGCTCCTCCTCTTCCCCATGCCGAACGCGAGCAGCAGCAGCAGCTCACCAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGCTCCGTCCTCTCCCTCTCCCGCTCCGAGAGCCGCGTCAAGGCCAGGGAGCGCGCCAGGGAGCGGAGCAGCGCGGCCGCCGCCGCGGCATCCAAGGACGCCGGGGACGACGCCGCCACCCCCACCGCGCCCACCGCCGCGCCCGCCTCCTCGCAGGCGGCTTCCTTCACCGAGCTACTCACCGGGATGGCCGCAGCCAACGCCTCACCCGCTGACCACAAGCAGCAGCAGGCGTGGCAGCCGATGACCGTCGCCGCGGCCACCGCCGACTACATCGGCTTCGCCGCCGCCGCCGCGCCGCATACGCAGCCGCGGAAATCCGCCGCGGGCCATCACTCCGCGATGCCGCACACCTTCGCATCACCCGCTCCCCACCTCGCCAACATCACCCCCATCGCCATGGCGCCCGCGCAGCACTTCACCCTCACACCCGCCGCCGCCGAGCACCACGCGGAGATGACGCACTACTCGTTCGACCACTTCATGCCCGTCCACGCGGCAGCAGCGGCGGCGGCGGCGGCCTCCACCCCGGCCGGCGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTCTTGTGGGTGTCCACAGTAGGGGGACCCTTCAGTCCAATTCGCAGTCTCACCTCTCCAGCCATCACCACCACCATCACCAGCAACAGCAGCAGCAGCAGCAGCTGCAGAGGCTGTCTGCTCCGCTGGATGCGCCCAACATTCCGTTCCTCTTCAGCCCGGCCGCCGCGCCCACCGCCGCGGACACCCAGTTCGCCGCCGCATTGCAGCTCTGGGACGGGTTCCGGCACGCCGACATCAAGGAGAAGGGCAAGCACTGATCAGATCAGCAGCCGCGGGCATCGACGGCGACGTCTCTTCTTGGATGGTAAGGGGCCATGAACTGATCTCCACTCTCCCCCAATTGCTTCATGTTCAGCTTTGCTTGCTTTTTGGCAGCTTGTGCCTTGGGGGAATTTGTTTAAGCCCCCAATTGCGAATTTGATATGGTTTAATCTCCAACTTTTGGTGGCTCTCGAGGTGGCCTTGTGTCCCTCAATCGCACAAAACACTCGGGCTGTTCTTGAGCAATTGACGAGTGTCTAAGCTTTAGGGGGAGGGAGCATTCAGCTCAACCCTTTTACAACAGGTGTCGATGCACTACTCACCGGGCTGGGATCTTGCTTCTTGTTCTGTTCCCCCCCAACAATTATTTCATAGGAGACAGGCCAATCGCACGGTTTCTGCTTGCCCGGCATTGGATTTTTAATGCCTTAATTTGTTGTAACCACACCCTCCCTACGTTGGGGTAGTATTGCTATTGCATGGATGGAAGGGATGATGCATCTGTATTGTCAAATGCTTGAACTGCAAATACAGAATGGATGGAGAAAAATACCCTGTAGTCTAAGCTGTTTCCTAGTGTTCTTTTGATAGGCATTGGCTTTGTTGAGAAGTGGACGCTAACCCCCAATGTCTATTGTCTTTAGCAAGAACTAGAAAATTTTCAGAAGAGCTCGGAGCTGAATATGCAGCTCAGCGTAGCCAAAACAAGTTCCTGTTCATGCCATTTTAACAAGTAGTATTTTGGTTGTTGTGCTTGATGTTTGTTTCTGCTTTACTACTAGTTACTAGCAGTTAGCACACAGAGTTGTGTGCCACCACCAAGTCAATGCATTCAATGCCTTGCCTGAAGGATACAACTAGAACTTTTTCTTGGATTGCATAGTTTTGTCTAGCTAGAAAATGTAGCAAGCTCAAATCACTTAGGAAGAAATACCTCCTAAGCAGTACAGCTTCATGAGGTCATTTTCTTTTATCAGGTCATATCTTTTTCTAAGATAGTTTCATTTATTGTTGGGAGTCTAGATGTTTACTGACTTAGTTCGTCAATAGTAGAGATGGAGAATAAGGCATGTGCAATATATGTGTTGTTGAACTATCAGTGCTAGACTGCTAGTGATGGAGTTAAGGTGCTAAAGTCTTGAGGAGTTATCTTAACATCTTTTCAATGAAAAGAGAAAACTGCGAACGATGCGACTTCACAAAAAAGAAAAGAAAATATCAGAGGAAGCTAATCCATATGCATCTACCGATGTTGTAAAAAATAAGTGCACACGTTTTAGCGCTGTTGCTTTAACTGTGAAGTGTTTCCTCAAAAAACATCTAATGGTTGACACTTAGGCCGAGTATGGGACATCTATCTCTGTCAAACTCAAAGGTGCCATGGGGCCAAGCAATCAAACATCAGTCTATATCAAATTCTAAGGGCAAACCATACATCAAAGCATACTATTAGCGATAATTGACAAATGACTGTGATATAAGCATGCTGTTCAAGATTTGGTTGCCCTTTAACTGGATGTGAACTTCCAAGGACCCATCAGGGAGCACTGAAAATCGTACATATTATAGTTTCTGAGTAGTTATATTCACTTACATATCGCAGTATCAGTAGATAATTCACACCATGTTAAGTCATCTTTACAGGGACTTACATAGTATTTCATGATCAGCTCTCGTAATAACCCTTAAGCTAGCGCTCAATTTGGAAATTTAGGCTGTGAGATCTGAATGTTCATATAGAACTATTCTTTCGTTGAAGTAATTTTATACATAGCTAGTTCCCTTTTTTATTCAAAGTTAATAGCAGAAGGAAGTTCTTTTCATGGTCCTTCAGACTTAAAAAGGGAACAAATCATACAAAGTACAACAGCTATGCGGTTAAAAGCTGAATTGCGTCGTTGCAGTTAACACCCAGTGGTTATAGTTATGTTAAGATTTGTGTAATTCTCTTCTGGAAAAACATGTTCTTAGATCTGGGTTAGCGAAAATCATTCTCAGTAGTTAATCCCTCAAGTATTAATACATTATGGATTATGTTGATAATCATTAGATAGTTGATTGTCATGGAAGACATTCTCAGAATTTGCGTCATGTTCCTAGGTGATATTCTAAAAGACTTCATTGTCAGGATCATGTTTCCTAAATTTTGCCTTAATCTTTATGTAACTCAGCCCTTTCTGTTCCTCACCAACTAACATGTGCTACATGTACCTTTTGTCATATTTGATAGGAAAATGTGAGAAGTGCCACTGTGAAGTAGTATGTTGTATCATGAAATGGTTGAGATTTTCTTTTGTGTAGAAGAGTGCTCAAATATTATGCTTTCCTTTATTGATGCTTTCTAGCGCTAAATAAAACTAAACCCGTATCCCGTATGCCATATTGAATTTTAAGTGCTTCGTATTTCAGGAAAGTTATCTCAGCTGGAATACTGTGTACATGATACAAAGCTGAGATTTTAAACAGTATACTACCTTAAGACTAGTTTATCACAAAGATAAGCACCAGAGTAGCCAAAAGGTGCCTTTTTTTATTGTTTTGTAGCTTAGCTATAACTTTGGTCTAACTACTGCTTTTCCATGTAAGTTGTATATATTAAGATAAGCTTGAAATACATCAACATGCTTGTGAATTGACTATTGAGTTTACAAAAAATAACTTTTAGTACTTAGACCCAGTAATCAAACTAATACAATAAGCCTAAGTTAGCACAATCTTGTTCATGGGCCATTATTACAAAGCTTGAATGAATGTCTCTAGCACTTCCTACCTTTTACTGCCCAAGAACTGTCATATGTTTGACATGATTTCTTTGTTTGTCAAATAAAATGATTTGGATCCTTGCGTTATAGTTGCTAGGATTAGAATCTGTTGTCTCAAAGGTCTTTAGTACATGTGGTTTACTATGTTCTTCTAGAGTCCTGGAATATAAATCTACTCAATAGACCAGGAAAAAAAAGCATTATGATTAACATCAATCCGACAGGTGAGATGAAGCTGGGGTTTTATTGTCTTCTCTGATAGAATCATTCCAGAAGGATCAGTTAACTCACCAATATAGTAGGCAACTTATGCTGCTACTGTGATTAATAATATGAAAGTGCTTCATCAAGAAAACTAGAATGACCAAAAGGTGCTCTGCTAAAACAGTTTGGTCCAGCTGTCCATTTTTTTTAAAGCAAAAGTTTATAGGCTGGCCTACTATATGTCTATATCTCAGCCTCTGTCCATCTGTCAGCAATGCCACACTATTGGAGTGACAGATCTGGGAATATATAGACACAGTATTACCCATTGTTTCGTAACATCAGTTTAAAGATTGCGCGCTACCTTTTAAGGTTAAGTTTAGTAGAATTTGCACATAGTTTGACAAGTAACTTGTATTTCTTCTGATGGAGATTTTCATTCTTGATTATTTACAGGAAGTGAAAACATCAAAACGTTGCAAGCCATTCCTGTGAGCAACATCCACAGCTTGAAGCTGCCATAAGTGAATGCTGGATGCATTCTCGGAAGTAGAGCATCAACTGCACATCTACCTTGGTCACGGGAGGACCTCATCATCGCTATTCAGATGATCTTGTGCTTTTCTCTGCCTGTTGTTGTATTCATTTTGTTGAGTTGAGAATTTGGGAGCATTACTCGCCGGAGTGCCCTGAGGAGGGGACGCCCTTGTAATCCTTTCTGTTGTAAACTATGTCAATGGATGCATGCGGCTCTGGACTGGATTGGTTCTTTGCCTCTTTTGACACTGTGAGATCGGTTGCCTGTCAATTTTATTGTTCTCGGTTGTGAGAGAAG
More
|
||||||||||
| CDS seq | ATGGAGCTCGCCGGCAGCAACAACAAGCGGGGGAGGGTGAGGGGGCCCAACGACGACGACGACGACGCCGGGGAGCCGGACGCCAAGCGCCATCACCACCAGCTGCTGTTGCCGTGGCCGCAGCAGCAGCAGCAGCAGCATCCGGCGTCGCGGATCTACCGGGTGTCGCGGGCCTCCGGCGGGAAGGACCGCCACAGCAAGGTGTACACGGCCAAGGGCATCCGCGACCGCCGCGTCCGCCTCTCCGTCTCCACCGCCATCCAGTTCTACGACCTCCAGGATCGTCTCGGGTATGACCAGCCGAGCAAGGCCATCGAGTGGCTCATTAAGGCCGCCGCCGCCGCCATCGACAAGCTCCCTTCGCTTGATACCGCTTCCTTCCCCACCAACCCCGCCTCCTCCGCCGCTGTTGCTGCTGCTGCTGCTCCTCCTCTTCCCCATGCCGAACGCGAGCAGCAGCAGCAGCTCACCAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGCTCCGTCCTCTCCCTCTCCCGCTCCGAGAGCCGCGTCAAGGCCAGGGAGCGCGCCAGGGAGCGGAGCAGCGCGGCCGCCGCCGCGGCATCCAAGGACGCCGGGGACGACGCCGCCACCCCCACCGCGCCCACCGCCGCGCCCGCCTCCTCGCAGGCGGCTTCCTTCACCGAGCTACTCACCGGGATGGCCGCAGCCAACGCCTCACCCGCTGACCACAAGCAGCAGCAGGCGTGGCAGCCGATGACCGTCGCCGCGGCCACCGCCGACTACATCGGCTTCGCCGCCGCCGCCGCGCCGCATACGCAGCCGCGGAAATCCGCCGCGGGCCATCACTCCGCGATGCCGCACACCTTCGCATCACCCGCTCCCCACCTCGCCAACATCACCCCCATCGCCATGGCGCCCGCGCAGCACTTCACCCTCACACCCGCCGCCGCCGAGCACCACGCGGAGATGACGCACTACTCGTTCGACCACTTCATGCCCGTCCACGCGGCAGCAGCGGCGGCGGCGGCGGCCTCCACCCCGGCCGGCGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTCTTGTGGGTGTCCACAGTAGGGGGACCCTTCAGTCCAATTCGCAGTCTCACCTCTCCAGCCATCACCACCACCATCACCAGCAACAGCAGCAGCAGCAGCAGCTGCAGAGGCTGTCTGCTCCGCTGGATGCGCCCAACATTCCGTTCCTCTTCAGCCCGGCCGCCGCGCCCACCGCCGCGGACACCCAGTTCGCCGCCGCATTGCAGCTCTGGGACGGGTTCCGGCACGCCGACATCAAGGAGAAGGGCAAGCACTGA
More
|
||||||||||
| Protein seq | MELAGSNNKRGRVRGPNDDDDDAGEPDAKRHHHQLLLPWPQQQQQQHPASRIYRVSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLDTASFPTNPASSAAVAAAAAPPLPHAEREQQQQLTKSGCSSTSETSKGSVLSLSRSESRVKARERARERSSAAAAAASKDAGDDAATPTAPTAAPASSQAASFTELLTGMAAANASPADHKQQQAWQPMTVAAATADYIGFAAAAAPHTQPRKSAAGHHSAMPHTFASPAPHLANITPIAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVHAAAAAAAAASTPAGGDYNLNFSMSSGLVGVHSRGTLQSNSQSHLSSHHHHHHQQQQQQQQLQRLSAPLDAPNIPFLFSPAAAPTAADTQFAAALQLWDGFRHADIKEKGKH |
||||||||||
| Function | Transcription factor PCF6 [UniProtKB/Swiss-Prot:Q10CE8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0152000 | OsNip_07t0152000-01 | Chr07 | 2751213 | 2756586 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCTCGCCGGCAGCAACAACAAGCGGGGGAGGGTGAGGGGGCCCAACGACGACGACGACGACGCCGGGGAGCCGGACGCCAAGCGCCATCACCACCAGCTGCTGTTGCCGTGGCCGCAGCAGCAGCAGCAGCAGCATCCGGCGTCGCGGATCTACCGGGTGTCGCGGGCCTCCGGCGGGAAGGACCGCCACAGCAAGGTGTACACGGCCAAGGGCATCCGCGACCGCCGCGTCCGCCTCTCCGTCTCCACCGCCATCCAGTTCTACGACCTCCAGGATCGTCTCGGGTATGACCAGCCGAGCAAGGCCATCGAGTGGCTCATTAAGGCCGCCGCCGCCGCCATCGACAAGCTCCCTTCGCTTGATACCGCTTCCTTCCCCACCAACCCCGCCTCCTCCGCCGCTGTTGCTGCTGCTGCTGCTCCTCCTCTTCCCCATGCCGAACGCGAGCAGCAGCAGCAGCTCACCAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGCTCCGTCCTCTCCCTCTCCCGCTCCGAGAGCCGCGTCAAGGCCAGGGAGCGCGCCAGGGAGCGGAGCAGCGCGGCCGCCGCCGCGGCATCCAAGGACGCCGGGGACGACGCCGCCACCCCCACCGCGCCCACCGCCGCGCCCGCCTCCTCGCAGGCGGCTTCCTTCACCGAGCTACTCACCGGGATGGCCGCAGCCAACGCCTCACCCGCTGACCACAAGCAGCAGCAGGCGTGGCAGCCGATGACCGTCGCCGCGGCCACCGCCGACTACATCGGCTTCGCCGCCGCCGCCGCGCCGCATACGCAGCCGCGGAAATCCGCCGCGGGCCATCACTCCGCGATGCCGCACACCTTCGCATCACCCGCTCCCCACCTCGCCAACATCACCCCCATCGCCATGGCGCCCGCGCAGCACTTCACCCTCACACCCGCCGCCGCCGAGCACCACGCGGAGATGACGCACTACTCGTTCGACCACTTCATGCCCGTCCACGCGGCAGCAGCGGCGGCGGCGGCGGCCTCCACCCCGGCCGGCGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTCTTGTGGGTGTCCACAGTAGGGGGACCCTTCAGTCCAATTCGCAGTCTCACCTCTCCAGCCATCACCACCACCATCACCAGCAACAGCAGCAGCAGCAGCAGCTGCAGAGGCTGTCTGCTCCGCTGGATGCGCCCAACATTCCGTTCCTCTTCAGCCCGGCCGCCGCGCCCACCGCCGCGGACACCCAGTTCGCCGCCGCATTGCAGCTCTGGGACGGGTTCCGGCACGCCGACATCAAGGAGAAGGGCAAGCACTGA
More
|
|||||||
| Protein seq | MELAGSNNKRGRVRGPNDDDDDAGEPDAKRHHHQLLLPWPQQQQQQHPASRIYRVSRASGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLDTASFPTNPASSAAVAAAAAPPLPHAEREQQQQLTKSGCSSTSETSKGSVLSLSRSESRVKARERARERSSAAAAAASKDAGDDAATPTAPTAAPASSQAASFTELLTGMAAANASPADHKQQQAWQPMTVAAATADYIGFAAAAAPHTQPRKSAAGHHSAMPHTFASPAPHLANITPIAMAPAQHFTLTPAAAEHHAEMTHYSFDHFMPVHAAAAAAAAASTPAGGDYNLNFSMSSGLVGVHSRGTLQSNSQSHLSSHHHHHHQQQQQQQQLQRLSAPLDAPNIPFLFSPAAAPTAADTQFAAALQLWDGFRHADIKEKGKH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.787351 | 0.932119 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0785800 | RBH | 0.131472 | 0.000000 | 1.121476 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g05720 | RBH | 0.503667 | 0.619479 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0152000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0003280 | RBH | 0.071287 | 1.092404 | 4.102104 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0003290 | RBH | 0.0 | 2.856670 | 1.231091 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003180 | RBH | 0.166724 | 0.990870 | 2.280071 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003110 | RBH | 0.033814 | 0.019381 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0003220 | RBH | 0.264617 | 0.0 | 4.795241 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0045500 | RBH | 0.598215 | 1.535699 | 3.156874 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0003180 | RBH | 0.045878 | 0.161261 | 0.305346 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0049900 | RBH | 0.607923 | 1.0070765 | 4.171784 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0003210 | RBH | 0.0 | 0.115229 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0003220 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0003300 | RBH | 0.174716 | 0.225532 | 0.434971 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0003190 | RBH | 0.083973 | 3.210532 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G003310 | RBH | 0.111511 | 0.000000 | 2.190616 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0003100 | RBH | 0.560482 | 0.000000 | 2.053880 |
