Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0108000 | OGI:07001100 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:431999-437549 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACTAGTACAATCCCTCCCCCTCCTCGTTCACGGCGACAACCCCGCCGCCGCCGCCGCCGCCTTTCGAGAGATTCCCCGGCGAGATGGCGCCTCCTCCCCCAAAAGGTTCGTTCATGTATACTAGCTTGTTCCCTCCTCCTCTCTCCAGTCTCCTCTGACATCGAGGCGATCGCAGAGCTTCCTGGCTTCTACTACGACCCGGACAAGAACCGCTACTTCCCCATCCGAGGTCCCATCCCCGGCGCCGCCACCCGCCGCCCTGCACTACCGCCTCCTGCCCAACCCCCGCCGCCCCAGGTATGTTAACTCTCACCATCGCTCGCTCTACCTGTCGCCACGCATTGATGATGATGATGATGATGATGATGATGTTCTGCAGGCTGCAGCAGCTGGATGCAGGAAGACGGCGAGGCAGCCCGAGCTGGTCCACGCCAGGGAGATGTACGGCGGCGGGGTCATCTTCTCCAACAAGAGGAAGTCCACCTTCATGCGCCAGTGCCAGTACGCCCAGGCGTCTCAACCCATGGTTGCCTTTCCTTTCTATCTCTTTGGCTTTTGACATTTGCTGCTTTGCTTGCTTGTCTCTGTTCCTGCAATACGCTCATCTTGTTCGGTTAACAGGTTTGGAAGTACAAGGGCACGGCCTTGGTGGCTGACAAAGCACTCGAAGAATTGTATGTGACGATTCAGACACCAATTGGACTGAAAGAATCCAAGGTGCTAGTGACCGGAAGCATGAATGGCATAGTTCGGTAAGGCTCTCAATTCCATTCTTATTTCTGTGTTTCAGTATGACAGTAGGTTCCTTTAATAGTAAGAGACAGGACACATATCTACCATCGTTTGATGTTATCTTAAGACTGCATTATTTCAATGATACATTGGTGCTCATCGGTGTGCTTGTGAAATCTGCTTTCAACAACAAACTAGATAACTGAAGTTAAAAAGCAAAACATAAAAGTAACCAACAACCCCTAAACACACATCATGTACTTCGATTACTCCTAAAAGTCCAGGAAATATTCAAGTCTTGAAATTCGGGCAGTTGAAGTGATTAGTTTTTCACCTCACAGTATTACTTTGACAAGCCTCTAACCAGCAACAGCATTTTTATGATTGGCCGCTGTTGATGCTGTACAAATGGTCTTCTAACCACCGCCATCACCATTGCCTCCTCCATAATGATATGAAGTCAGATACTTGAACATAAGTGCGCCCATCCAGTACAGTATAATAATGATATGAACAAAATTGCACCCTTCCTACGAGTTACACAAGAAGGTCCACACTGCTTAAAAGCTGTACCAATAAGGCTCAACTAGACCTTTCATCTCTTACTATATTTTTATTTTGATATGTTTTAACAACCATGCCATGTGTGAATAGAAGTATATGTTTTAAAAGAACACCACAGTTTCTTTATATTTATCCTTTTGATGGTTAAAAAGCTTTTATTTGTGTATATAAGCTTACAATTACTTTATCAGTTTGGTTTAATGATGTACATTGTTCGCTAAACATGTGACTTCTTTTTTTGTTTTGAAATCATCTGGCAGTTTATATGGACTAGGGACTGCTATAGCAAACATTGAGGATGAGATGGAGTTTTTACCTGAACCTGCTTGGACTCCCTTGGTAAAGCAGAATGCACCAGTGAATTCTGCACTTGCAAGCATCTGGTCATCTGAAACAGCTTTCTCAAAATTCTTATCAAGTGTAACCTGCATAAAAAAGCTTCAGCATTGTTTCCCTGGAGCTGACAACACCAATTCCTCAAGCCAGCGAGCATTGTATCCTTAATTTGCTGCTTATACTATGCATATTATTCCTACCATGTTTGCACATGTTGTGTCAATGTGCATTTCATTTATTTATTTTTACCTGCAAATCTGCAATTTTGTCGTGAGCTTGCTTTACTTGACATCACAAAACATGGTGGCTACTCTAGGATCTGGAGAATCTGGTGGTTCTATACATATTATGGATCTGTCTGATACTATTGACGTGGCAATGGGCTCGATGAATGCCTATGGAGGAAATATTATAGGAAATATTATACCGGTTGCTTCATTTAATCGCACAATCTGGACAGCTGATTGTAATTCAGATGGCACACAGGCAGTCATAGGTGAGTTTTGAGTTGGGCCTATAATTTATGGTGCACCTAAAATGCACCTATTACTTGGAGTAACAATTTAATCTTGTACCTTTATAAACATTTAGACAGCATTTGAGTACATTTGTTCATAATTGTTAGCGTGCTATGGAATGCACTTGTACAATTGTATCCCACCATAACTGTACCCTGCTAAATTTGGGTCTTGCGTGCAATTGTATTAATCCAATTTTAAAGGTCAGGTGTTGCATTAGTTCGACACATTATTTTATGTTCACTGCAATTTGGACTGGTAGTGTAAGGAACTTCTGTTGCATGAACTAAGCTTGCTTTATTATTAAGTTTTCACTTCATCTATTTCTAGGTACAAACAGTGGTGCTGCTTTTTTTGATTTGGAAAGAAGAGCATTATCATGGATGTATCACTGCAAGAGTGACATTCTCTCCCAACAATTTATGCAATCGGTAATAATTTAGATTTAAACATGGGTTACCTTTCACTTAGATTTGCACATGTTCAAATGATAATGTACGGTATGTGTTGGAAGGATAGCCATTGAAAATTTTTGTTGATTCTTTGGTCCATTCATAGTTTCCCTCAACATATAATCTTTTCCTGCTACGTTATTCAAATAACTTAATTCAATTTGTTTGATGCATGGCTAAATGTTTCTCCTGAATCTCATTATAAAAACTGAAATAGTGCCTTTACCAGTGTAGATCTAGATGGTAGTATAAGTTTATAGGTTTTGTACTTGCTAGTCCTATGATTGTTAAATGGTTTCTGTTTCTATGTAAGTTTAAGTTGTAACCCCATCCAACGTAGTGTTAGCACTTGAGCGCAGTTCACAAGACTTGCCTTGCTATTTTTTGTACTATTTCCAAATTCCAAATGATTTTCCCATGTTTTCAGGGAAATGTTGTGCTATGCGGCTTGAGGAATGGGAGCATATTTCCTCTTGATGTACGGCAAAAGCAACATAATCGTCCTACCGAGCTAGCTTCACCTGGTACTGCTAGGAGGACTATTCCCCTGACACCCAGAAGGCATAATCGTTGGAGAAATCAGGTGCGCACTAAGTCTAGTACATATCGTTCATTGATACATGTCTACAGTGTATTGTTGGGCATTTGGTACTGTGTCTGGGGCACTGGACAGGACAGAGGTATTTCTTTGATTGTATTATATGTGACATCTATGTTGTACGTCTCTGTTTTATGAGCTTAATGTGTCTGGTTCATACATGATAACAATAGGGACACCTACTCACTTCCCAGAGCAAGCTTTATTTGTATTCTGTATGTACTTTGACAATGTAAATGGGAAAAAAGACAAAGCTTAGCAATCTTTCATCCTTTAACAATTGTAACCTGTGTTTAATATAAGCCATAAAATATCACCACTTTGGTTATTGGTCAAGTTCTAATTTTGGTTCCTCCTAGTTTTCATATCACTAGAAAAAAATTCTGGGGATAATTTATTTTGAATGCTTATCTTGTTTATTGAGCTCATCAATATTTTAATTTATGATTTTTGTTTGGGAAAAAAAAATGCCTTGCAGGCTGATAACGCTAAATCTTCAAGAGCTATTTCTATGTCTTCAGCAGTTTGCAGGTAGTCAAAAAAATTCCCCTTGCTGATACTCTACATTTGACATTTTTGTTGAATTTCTTTGTGCTAAAATTGGCATCGTTATGCAGCTTGGTGGTTCTCTCATCAGATGAGCACTACTTCTTAGGGAGCTCCATGGATGGATCTGTAAGTGCATAACTGCATACTAGACTGCTTTTTGCTATGAGCAAGTGTATAAGCGACTGTGTTCCAAATGTCTCTATTGATTTGTTTCAAAGCTGGAATTGTCTGCTCACACCTCAACATATAGTTTAGTAAGATGCCAACTGAAGTTCCATTTGGCCTTTATGCCACTATGAGCTGTTACCTGTTACGTAGTTGTTATCTGTGAAGTTAAGTTGCACCTTTTTTTTTTACTTGTTTCGGCTGCAAACTCAGAACTTGACATGCAATTGCTTCACTTGTTGTACAGATCAAGCTATTCGATCTCCGTCTCATTCAGAAAGGGCCTATACAGTCTTATGCAGGGCATATAAATTCACATACTCATTTACCACTTGTTGTCGATCCCTCTGAAACCCTTCTTATGTCAGGTAAGTCAATCCTTGGTTCCAGATATCACGGTTTCCTGTCTGCTTCTGTTAGGACCAATGGCTCTCAAGATTACACCTTTAGATATAAGTAGTAAATACATTGACCAAAACATCGACAGTACATTGCACAAGCTCCACCACTGATGATACATCATAGAAGTCAGCCTGCCCTTTGAATTTTACTCCCTCCGTCCTAGAATATAGAGAGTTTTTAGAGTTGGACACGGTTATTAAAAAAGTAGGTAGAATTAAATAGGAAGGGGTTGTGATTGGTTGAGAAGTGGAGGTAGGTGGGAAAAATGAATGGTGGAGGGTTGTGATTGATTGGGAAGAGAATGTTGGTGAAGTTGTTATATTTTGGGACAAATCCGAAGTGCTAAAAGTTGGTATATTTTGGGACGGGGGGAGTAACTGTTATAGAACAGAGGGGCTATATGGCTCCCTGTATGTAGAATCCTAAATCCTGTGGTTAAATGCTGTCTGATAATGTTACCATGGCATTTCCATAAATAATGTTAACAGTCTTTCAGTTACTGCAAGTCTGAATCATGATAGTGTCATTATGAAATTTGAGAAATCTATGCTATTATTACTAGCTGGTTTGCCATTATGCATTAGGCCATTTCGCAAAGAGAGCTTTCTATAATGCACATGGCAGTGGTATTCCTAGCATCAAATTTAATTTCTCAATAATCTGGAAGTCTCTGAATATCTTTACCCTTGTCAGGTGGGGAAGACAGAATGGTTCGAATTTGGAGTATAAAAACGGGCGAGCAAATATTTGCACAGAGTGTGGCTGGTTCACTATTCACGGCACTTTGCTGGCCAGAAAGCGGCTGCGACTTGCACAATTCTTCGCTGTTCGGTGTAAATCACAGTTGGGGGGCTTGGATGGGATCGCGTGATGGTCTGTTCTATGTGCATGGTACTTAAGCGACTGATGGTACTGACTCAAGCCATGATGGCTCTACTGGTGTTATGTACATAAGCATATAAGGAGCGATGGACTGAGTTCTTTGCTGCTGGAGAGTTGACGCTAACGTTACTGGAGCTGTGTGCACTGATGAGAAGAGTCATCTCAATGTAGCCGATGTTATATAACCATGAGATAGATGTGTGCTCATTTTAACGTTTTTTTCTTTTTAATCTTATTATGATGATAGATTCTTAGGTCATGGGTGAGAGGTACTGGGAGCTATGTTCAGCATCATGTATGTGTTGAACCGCTTGTATTTTCGGTTATCCTTACGAGCTAACTATTCGTTGT
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| CDS seq | ATGGCGCCTCCTCCCCCAAAAGAGCTTCCTGGCTTCTACTACGACCCGGACAAGAACCGCTACTTCCCCATCCGAGGTCCCATCCCCGGCGCCGCCACCCGCCGCCCTGCACTACCGCCTCCTGCCCAACCCCCGCCGCCCCAGGCTGCAGCAGCTGGATGCAGGAAGACGGCGAGGCAGCCCGAGCTGGTCCACGCCAGGGAGATGTACGGCGGCGGGGTCATCTTCTCCAACAAGAGGAAGTCCACCTTCATGCGCCAGTGCCAGTACGCCCAGGCGTCTCAACCCATGGTTTGGAAGTACAAGGGCACGGCCTTGGTGGCTGACAAAGCACTCGAAGAATTGTATGTGACGATTCAGACACCAATTGGACTGAAAGAATCCAAGGTGCTAGTGACCGGAAGCATGAATGGCATAGTTCGTTTATATGGACTAGGGACTGCTATAGCAAACATTGAGGATGAGATGGAGTTTTTACCTGAACCTGCTTGGACTCCCTTGGTAAAGCAGAATGCACCAGTGAATTCTGCACTTGCAAGCATCTGGTCATCTGAAACAGCTTTCTCAAAATTCTTATCAAGTGTAACCTGCATAAAAAAGCTTCAGCATTGTTTCCCTGGAGCTGACAACACCAATTCCTCAAGCCAGCGAGCATTGGTGGCTACTCTAGGATCTGGAGAATCTGGTGGTTCTATACATATTATGGATCTGTCTGATACTATTGACGTGGCAATGGGCTCGATGAATGCCTATGGAGGAAATATTATAGGAAATATTATACCGGTTGCTTCATTTAATCGCACAATCTGGACAGCTGATTGTAATTCAGATGGCACACAGGCAGTCATAGGTACAAACAGTGGTGCTGCTTTTTTTGATTTGGAAAGAAGAGCATTATCATGGATGTATCACTGCAAGAGTGACATTCTCTCCCAACAATTTATGCAATCGGGAAATGTTGTGCTATGCGGCTTGAGGAATGGGAGCATATTTCCTCTTGATGTACGGCAAAAGCAACATAATCGTCCTACCGAGCTAGCTTCACCTGGTACTGCTAGGAGGACTATTCCCCTGACACCCAGAAGGCATAATCGTTGGAGAAATCAGGCTGATAACGCTAAATCTTCAAGAGCTATTTCTATGTCTTCAGCAGTTTGCAGCTTGGTGGTTCTCTCATCAGATGAGCACTACTTCTTAGGGAGCTCCATGGATGGATCTATCAAGCTATTCGATCTCCGTCTCATTCAGAAAGGGCCTATACAGTCTTATGCAGGGCATATAAATTCACATACTCATTTACCACTTGTTGTCGATCCCTCTGAAACCCTTCTTATGTCAGGTGGGGAAGACAGAATGGTTCGAATTTGGAGTATAAAAACGGGCGAGCAAATATTTGCACAGAGTGTGGCTGGTTCACTATTCACGGCACTTTGCTGGCCAGAAAGCGGCTGCGACTTGCACAATTCTTCGCTGTTCGGTGTAAATCACAGTTGGGGGGCTTGGATGGGATCGCGTGATGGTCTGTTCTATGTGCATGGTACTTAA
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| Protein seq | MAPPPPKELPGFYYDPDKNRYFPIRGPIPGAATRRPALPPPAQPPPPQAAAAGCRKTARQPELVHAREMYGGGVIFSNKRKSTFMRQCQYAQASQPMVWKYKGTALVADKALEELYVTIQTPIGLKESKVLVTGSMNGIVRLYGLGTAIANIEDEMEFLPEPAWTPLVKQNAPVNSALASIWSSETAFSKFLSSVTCIKKLQHCFPGADNTNSSSQRALVATLGSGESGGSIHIMDLSDTIDVAMGSMNAYGGNIIGNIIPVASFNRTIWTADCNSDGTQAVIGTNSGAAFFDLERRALSWMYHCKSDILSQQFMQSGNVVLCGLRNGSIFPLDVRQKQHNRPTELASPGTARRTIPLTPRRHNRWRNQADNAKSSRAISMSSAVCSLVVLSSDEHYFLGSSMDGSIKLFDLRLIQKGPIQSYAGHINSHTHLPLVVDPSETLLMSGGEDRMVRIWSIKTGEQIFAQSVAGSLFTALCWPESGCDLHNSSLFGVNHSWGAWMGSRDGLFYVHGT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0108000 | OsNip_07t0108000-01 | Chr07 | 431999 | 437549 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGCCTCCTCCCCCAAAAGAGCTTCCTGGCTTCTACTACGACCCGGACAAGAACCGCTACTTCCCCATCCGAGGTCCCATCCCCGGCGCCGCCACCCGCCGCCCTGCACTACCGCCTCCTGCCCAACCCCCGCCGCCCCAGGCTGCAGCAGCTGGATGCAGGAAGACGGCGAGGCAGCCCGAGCTGGTCCACGCCAGGGAGATGTACGGCGGCGGGGTCATCTTCTCCAACAAGAGGAAGTCCACCTTCATGCGCCAGTGCCAGTACGCCCAGGCGTCTCAACCCATGGTTTGGAAGTACAAGGGCACGGCCTTGGTGGCTGACAAAGCACTCGAAGAATTGTATGTGACGATTCAGACACCAATTGGACTGAAAGAATCCAAGGTGCTAGTGACCGGAAGCATGAATGGCATAGTTCGTTTATATGGACTAGGGACTGCTATAGCAAACATTGAGGATGAGATGGAGTTTTTACCTGAACCTGCTTGGACTCCCTTGGTAAAGCAGAATGCACCAGTGAATTCTGCACTTGCAAGCATCTGGTCATCTGAAACAGCTTTCTCAAAATTCTTATCAAGTGTAACCTGCATAAAAAAGCTTCAGCATTGTTTCCCTGGAGCTGACAACACCAATTCCTCAAGCCAGCGAGCATTGGTGGCTACTCTAGGATCTGGAGAATCTGGTGGTTCTATACATATTATGGATCTGTCTGATACTATTGACGTGGCAATGGGCTCGATGAATGCCTATGGAGGAAATATTATAGGAAATATTATACCGGTTGCTTCATTTAATCGCACAATCTGGACAGCTGATTGTAATTCAGATGGCACACAGGCAGTCATAGGTACAAACAGTGGTGCTGCTTTTTTTGATTTGGAAAGAAGAGCATTATCATGGATGTATCACTGCAAGAGTGACATTCTCTCCCAACAATTTATGCAATCGGGAAATGTTGTGCTATGCGGCTTGAGGAATGGGAGCATATTTCCTCTTGATGTACGGCAAAAGCAACATAATCGTCCTACCGAGCTAGCTTCACCTGGTACTGCTAGGAGGACTATTCCCCTGACACCCAGAAGGCATAATCGTTGGAGAAATCAGGCTGATAACGCTAAATCTTCAAGAGCTATTTCTATGTCTTCAGCAGTTTGCAGCTTGGTGGTTCTCTCATCAGATGAGCACTACTTCTTAGGGAGCTCCATGGATGGATCTATCAAGCTATTCGATCTCCGTCTCATTCAGAAAGGGCCTATACAGTCTTATGCAGGGCATATAAATTCACATACTCATTTACCACTTGTTGTCGATCCCTCTGAAACCCTTCTTATGTCAGGTGGGGAAGACAGAATGGTTCGAATTTGGAGTATAAAAACGGGCGAGCAAATATTTGCACAGAGTGTGGCTGGTTCACTATTCACGGCACTTTGCTGGCCAGAAAGCGGCTGCGACTTGCACAATTCTTCGCTGTTCGGTGTAAATCACAGTTGGGGGGCTTGGATGGGATCGCGTGATGGTCTGTTCTATGTGCATGGTACTTAA
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| Protein seq | MAPPPPKELPGFYYDPDKNRYFPIRGPIPGAATRRPALPPPAQPPPPQAAAAGCRKTARQPELVHAREMYGGGVIFSNKRKSTFMRQCQYAQASQPMVWKYKGTALVADKALEELYVTIQTPIGLKESKVLVTGSMNGIVRLYGLGTAIANIEDEMEFLPEPAWTPLVKQNAPVNSALASIWSSETAFSKFLSSVTCIKKLQHCFPGADNTNSSSQRALVATLGSGESGGSIHIMDLSDTIDVAMGSMNAYGGNIIGNIIPVASFNRTIWTADCNSDGTQAVIGTNSGAAFFDLERRALSWMYHCKSDILSQQFMQSGNVVLCGLRNGSIFPLDVRQKQHNRPTELASPGTARRTIPLTPRRHNRWRNQADNAKSSRAISMSSAVCSLVVLSSDEHYFLGSSMDGSIKLFDLRLIQKGPIQSYAGHINSHTHLPLVVDPSETLLMSGGEDRMVRIWSIKTGEQIFAQSVAGSLFTALCWPESGCDLHNSSLFGVNHSWGAWMGSRDGLFYVHGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.609622 | 0.873170 | 1.138188 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01730 | RBH | 0.432749 | 0.437482 | 0.307555 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0108000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000470 | SBH | 0.805605 | 1.512653 | 5.278978 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000470 | SBH | 0.165445 | 0.085371 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000490 | SBH | 2.017027 | 6.287436 | 7.842426 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0007100 | RBH | 1.8670655 | 4.6395165 | 6.202496 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000480 | SBH | 0.186278 | 0.275313 | 1.042029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0005200 | SBH | 3.6301755 | 5.0874595 | 9.688477 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000500 | SBH | 0.136143 | 0.193959 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000510 | SBH | 0.224890 | 2.443970 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000520 | RBH | 2.849826 | 6.217840 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000550 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000520 | SBH | 0.204629 | 1.114532 | 1.296076 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
