Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0727400 | OGI:06086430 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:30953101-30956664 | ||||||||
| Gene Symbol | RLCK220, OsRLCK220 | ||||||||||
| DNA seq | GAATTTCATCACTTGTATAAAACTATAACCAAATGAAAGGAAAGCATATAAACTGACAATGACTTCTTGCTGTTCTCAGTGCAACCTGATGCAACCCGTGATGCTTCAATACAAAAATAATTGAATTTATGCATATGACTATATGACAGCTATAAAGATTTAGTATATTTTTGTACTGTTACATTGATCATCATGATCGGTGCAAACTTCGTCATGACATCAAGAATTGAGATCTACTATAGTTAAACTTTACACCACCACCAACAGAATCAGCCCAATCTTATGTATCTCTACGATCATCTGCCCTTGGAGCTCGTCCTCGCGCTATCGCTCCTCGGAGAATTCCCCTGTCCACGCACCAGTGAGGAGCTGTTCCTGGGCTCCCTCGACTTGCTCTTAATCAACTTGATCTTCTCGAGAGCCTCAACGACTTCCTTCATGGATGGTCGGCTCTTGGGATCACCAGACAGACACTTGAGAGTGAGCTGAGCAGCTTGGAGGGCTCCCCTGGAATGATACTGCCCCTCAAGACGACTGTCCATCAGCTGGCTCAGCTTCCTCCGGTCAGCCAGTAACGGTTTTGCCCAGTCTACCAAGTTCAGCTTCCCACTGGGGCGGCTTGGGTCCAGCGCCCTCAGGCCAGAGAGCATCTCAAGCAGCACGACGCCGAAGCCATACACATCACTCTTCACATACAGGTGGCCTAGCTCATGAAAGATGAAATCAACCAGTATTTGCTATTTAGTGCAATGAACAGATACTTTCTTTCTTGTTTAAATAGTCCAAGCACAAGGATGTGACTGATGAAACATACCGGTAGCAACATACTCTGGAGCCGCATAGCCATAAGTACCCATCACTCGTGTTGTCACATGGGACAATCCACCGTCTGGACCATGCTTGGCCAACCCAAAGTCTGAGAGCTTTGCATTGAAGTTCTGAACACAATCAACATGATTGCAAACCGATTAGAGACTATTGTGTTTTGCGCAACAGGGAGCTGCTTATCAATTATAATTAGTTAGTTATCTAAAGAGTATATACCGAATCTAGTAAGATGTTGGAAGCCTTGAAGTCCCTGTAGATGATCTGTCTCTCTGATGAATGAAGGAAGGCAAGGCCACGAGCTGCACCAATGAGAATCTTCAGTCTGAGGCTCCAAGGCAGTGGCTCGTAAACTGCTCCTCCTGATGATGAAGAATTAGCATCAGAACTAGGAAAATAGGATGTTTGATCATAAATTCCCTTGACACCCTAGCAAAAAAATTAGAGTAATAATTTTCATATTATATTGAAACATTAACATAACAAGGAAAGAATAATGGAAGGTAGCAGCAACAAGGAACTGTCTAGGTCCAGACAATTTCGTTGATGCTGATGTCCTCAAAAAGTCCGTTTCATTAGTTGTATAGCACTATGGAATATGGTGCTTAATATATAATACATGATGAAAACGATGTTGCAATTGCACCAACATCTGCAAAGTGATGCATTGTATAGAGAGTAGGCATAAAGAGAGGTAAACAAATTGACATAAAAAGAAATGTTTCAGATATTATCATTAAAAAAAGGGAATCCAAGAAAAGACTCACTGCGGAACAGATGATTCTCCAAACTCCCCTTTGCCATGAACTCGTACACAAGAAGTAGTTCGTCATTATCCTTGCAATAGCCCAAGAGTTTGACAAGGTTGGGGTGTGAAATCCTCCCAAGGAAATTCACTTCAGACTGCATCGGAAACACATAGTTCCTTTTGAGAGAAGCACGTAACAGAAAAGCATGGAAAGTAGTACCACTTTTACCATCAGCAACTCATGGGAGAACGGTACTGGATTATGCTCTAAAAGTAAGTAAATAGAGTATGAAATGATGTAGGCAAGAAAAACAAACTAGAGCCACCAGAGATTTTTATTGCTGGTTATTAATAGAATCAACCGACATAACAGTTAACAAGGCACAGAGAAGACATCACATAAGTAGTGCAATATTATCAGATCATGACAAGAGTGGCAAGTAATGCAAAGGGCCAGCAAGCTCCACCCTGTCATGAGCATGAAAATGGTGATTGCAGCTTGAGCAATTCCAAACTATATGACAGTATTTTTCAAAACTAAATCTACCAATGGTTTGAGAATATTGAACACTGGCTGCCTTAGCCCCCTGATTTCAAGAAAAAATAGAATCTTCCTGAGAATCAATTAAGCAATTTATAATGAAATTAACAAAAGAAATATGTTTAGATAAGCAATTGGTGGGACATGATAATCACCTCCCATTGCTCCGTTCCCTGTACACTCTCAGGGTTGAGCTTCTTGACAGCAACCACCACACCGGTGCTACTCTTGGATGGATTCATGGTCCTCTCATCAACCCATCCCTTGTAAACCTTCCCAAATCCACCCTCCCCAAGAACTGTATCAGTCCTGAAATTCTTGGTAGCATTCTTGAGTTCAGCAAAGGTGAAGATCCTGAGATTTCGGGACTCAAGAATCTGGCCGTCTGGATAAGCATCGTCAGTGCTTACACCGCTAATGGTGGATGGAATGAAAGTACTGTTACTAAGTGTTGACAGCTTCCCGGTGGTGGTGGAGCTAGTAGTCCTCTTGGATGCAGACATTCCTACATGGTATGAAGATATTAAATGTGAGGTTTGAGTTAAGCGGATACAAATCAGCAGTCTCATATACATTATTGTTAGAACAAAGATTTCTGGGATATATATTCCTTAAGCGAGGTTAATGGTTAAAATTTGGAAGTATAATTCAGTGAATGTGTAGAAATGTGGTGTTGATGTTTGTGATGGTCGAATGTGACGGCACCGATGGAGCATAGCAAAAAAAAAAAAAAGGATACAGGGGAATTTGTTTATAGAACTGAAAAATAATTAATTTGAGGGGGAACGGTACTACCGTTTAGTGGAGTATGTTTTATGGAGTGAATTTGTGAGAGAAAAAAATAAAAAAAAAGGTTGTGCAGTTGGCAGCAATCAATCTAGGAGGTGAATGAATGGATTTTTCAGTTAAAATAGATAAATCAATGAATAGAGCGAATTACAGAGTGAGTGTATAGAAGTAAATTAATTAGCAATAGAAGAAGTAATCCGGGTGGGTATAGTGCTGTTGGAAAAGATGATTGTTTGCAGGAACAAACAAGAGAGATGGTGAAAGTCCATATGAAAGGCATAATAAAAACAGAAAGATTGAATCTTTTATATATAAATACAGAAAAGAAAAGAGCAAGATGGGATGGGATACGGACCTGGGGCAGCATCGTCATCGTCGTTCTCGTTATTGGCCCTTTTGGTGAAGAAGAAGGAATCTATGGCGCTGGCGCAGTTGCCCATGGCCTTGCTTTCCCCGGTTGAGAGGAAGGAGAAGATCGAGTCAAGCGGGGGAGACTATCCTCCTATCCTATCGACTTCGATTAGAGAACGCGCGCGCGCAACAAGGAAGACGATCGAGAGCCCTCCTCTCTCTCTCTCTCTCTCTCTCAGCTCAAATCTCTCAAGAGCGAAGAAGAGGAAACCAACCCAACCGTGCGTCTCTCTCGGAGGGGGATGGTCAC
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| CDS seq | ATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTCCGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGTGCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTCAAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGA
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| Protein seq | MGNCASAIDSFFFTKRANNENDDDDAAPGMSASKRTTSSTTTGKLSTLSNSTFIPSTISGVSTDDAYPDGQILESRNLRIFTFAELKNATKNFRTDTVLGEGGFGKVYKGWVDERTMNPSKSSTGVVVAVKKLNPESVQGTEQWESEVNFLGRISHPNLVKLLGYCKDNDELLLVYEFMAKGSLENHLFRRGAVYEPLPWSLRLKILIGAARGLAFLHSSERQIIYRDFKASNILLDSNFNAKLSDFGLAKHGPDGGLSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLSGLRALDPSRPSGKLNLVDWAKPLLADRRKLSQLMDSRLEGQYHSRGALQAAQLTLKCLSGDPKSRPSMKEVVEALEKIKLIKSKSREPRNSSSLVRGQGNSPRSDSARTSSKGR |
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| Function | Probable serine/threonine-protein kinase PIX13 [UniProtKB/Swiss-Prot:Q9SII6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0727400 | OsNip_06t0727400-01 | Chr06 | 30953101 | 30956664 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGCAACTGCGCCAGCGCCATAGATTCCTTCTTCTTCACCAAAAGGGCCAATAACGAGAACGACGATGACGATGCTGCCCCAGGAATGTCTGCATCCAAGAGGACTACTAGCTCCACCACCACCGGGAAGCTGTCAACACTTAGTAACAGTACTTTCATTCCATCCACCATTAGCGGTGTAAGCACTGACGATGCTTATCCAGACGGCCAGATTCTTGAGTCCCGAAATCTCAGGATCTTCACCTTTGCTGAACTCAAGAATGCTACCAAGAATTTCAGGACTGATACAGTTCTTGGGGAGGGTGGATTTGGGAAGGTTTACAAGGGATGGGTTGATGAGAGGACCATGAATCCATCCAAGAGTAGCACCGGTGTGGTGGTTGCTGTCAAGAAGCTCAACCCTGAGAGTGTACAGGGAACGGAGCAATGGGAGTCTGAAGTGAATTTCCTTGGGAGGATTTCACACCCCAACCTTGTCAAACTCTTGGGCTATTGCAAGGATAATGACGAACTACTTCTTGTGTACGAGTTCATGGCAAAGGGGAGTTTGGAGAATCATCTGTTCCGCAGAGGAGCAGTTTACGAGCCACTGCCTTGGAGCCTCAGACTGAAGATTCTCATTGGTGCAGCTCGTGGCCTTGCCTTCCTTCATTCATCAGAGAGACAGATCATCTACAGGGACTTCAAGGCTTCCAACATCTTACTAGATTCGAACTTCAATGCAAAGCTCTCAGACTTTGGGTTGGCCAAGCATGGTCCAGACGGTGGATTGTCCCATGTGACAACACGAGTGATGGGTACTTATGGCTATGCGGCTCCAGAGTATGTTGCTACCGGCCACCTGTATGTGAAGAGTGATGTGTATGGCTTCGGCGTCGTGCTGCTTGAGATGCTCTCTGGCCTGAGGGCGCTGGACCCAAGCCGCCCCAGTGGGAAGCTGAACTTGGTAGACTGGGCAAAACCGTTACTGGCTGACCGGAGGAAGCTGAGCCAGCTGATGGACAGTCGTCTTGAGGGGCAGTATCATTCCAGGGGAGCCCTCCAAGCTGCTCAGCTCACTCTCAAGTGTCTGTCTGGTGATCCCAAGAGCCGACCATCCATGAAGGAAGTCGTTGAGGCTCTCGAGAAGATCAAGTTGATTAAGAGCAAGTCGAGGGAGCCCAGGAACAGCTCCTCACTGGTGCGTGGACAGGGGAATTCTCCGAGGAGCGATAGCGCGAGGACGAGCTCCAAGGGCAGATGA
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| Protein seq | MGNCASAIDSFFFTKRANNENDDDDAAPGMSASKRTTSSTTTGKLSTLSNSTFIPSTISGVSTDDAYPDGQILESRNLRIFTFAELKNATKNFRTDTVLGEGGFGKVYKGWVDERTMNPSKSSTGVVVAVKKLNPESVQGTEQWESEVNFLGRISHPNLVKLLGYCKDNDELLLVYEFMAKGSLENHLFRRGAVYEPLPWSLRLKILIGAARGLAFLHSSERQIIYRDFKASNILLDSNFNAKLSDFGLAKHGPDGGLSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLSGLRALDPSRPSGKLNLVDWAKPLLADRRKLSQLMDSRLEGQYHSRGALQAAQLTLKCLSGDPKSRPSMKEVVEALEKIKLIKSKSREPRNSSSLVRGQGNSPRSDSARTSSKGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.675855 | 1.403094 | 0.507988 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0563900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g51170 | RBH | 0.799237 | 0.906155 | 0.243644 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0727400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029750 | SBH | 0.054425 | 8.802509 | 1.690667 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029550 | SBH | 0.172800 | 0.616888 | 0.933167 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0029910 | SBH | 0.242107 | 0.954889 | 1.438322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0029230 | RBH | 0.097931 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0029750 | SBH | 2.725069 | 2.743759 | 4.356246 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0484700 | SBH | 1.957603 | 3.600825 | 0.4569585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0029140 | SBH | 0.139171 | 0.096771 | 0.204479 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0468200 | SBH | 2.208626 | 3.7410755 | 1.0719615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0029680 | SBH | 0.257185 | 0.128047 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0029750 | SBH | 0.332470 | 3.976607 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0029470 | SBH | 1.093863 | 3.809498 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0030030 | SBH | 0.322463 | 0.000000 | 0.520200 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0029550 | SBH | 0.111922 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029450 | SBH | 0.447237 | 0.209107 | 0.403990 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029590 | SBH | 0.694146 | 11.828942 | 0.730124 |
