Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0722650 | OGI:06085580 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:30686334-30692634 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTTGAACAAGTAAGAAAAGGTGTTCATCTTTGCAGAGACAAGATCTAACACATTTCTAACTGCAGAGGTAGTTCATAGCATCCATCGATCACCTACACACAATATCCTCTCTCATGCCTGACCCCTGCACAAACGCACACCGGATTGCAAATACACATAATTTAGATCTTTCTAATGATTTTGTATCGTCAGATAATCTTGCTTGTTTTGGTCGACCTTCAGAATTGAGTTGATGAAGTTCGTCGCAGTGAGCTCTTTGTAGGCATCACCAGTGCAGCAAATAGAAGATGAATTACAAGACTTACCTGTGATGAATTACAAGACTTACCAGGCATCACCTGTCAAATAATCCATTGATGAAGTTAGTTTAGAAACTCAAGAGAGTACCGTTATAAATGCAGACTTAACATCAAGGCTAGCACAAATAGAAGATGAATTACAAGACTTACCTGTGAGAATGAAGATAAGTTGAAAAGTTGAAGGATATTACTGTTATTGTCAAGGACATGGGAGGACCAGAGAGCTTACCCAGTCATTACAATTTAGAGATGAACCACAGATTTGCATATGGAAAATGATATAAATGATATAAGAGGTTTGCAAGATGATCTGAGATCTAGCAATGAGAATTTGCTAAGAGAAGAAAGACTGATATAAGAGCTTTAGTCTATCCTTGCAAGCCTGACTTCGAAACTTAGTCAAAAGAGTATGGCCGTGCTTTTCAATTTCTTATGTAGTCTTAGCTGCCTCCAATTTGTTCACTTGTTGGATAGATTAGGTAACATAAATTTGATTGATTTTCCTGATGATCATAGATTTGTTCACCTCCTCCGCCATCTTGTGCCTGGCGCCGCCTCCGTCTTCGGTTTGCAAACGTGAACACTGGCATCACCTACATGAAAAATCAAATGGTTAATGGTGTGCAACACTGTCAACTTTAAGGTGAATTTGTGTCAACAAAATTTCAGTCAAGCTGCACAAAAGATTCAAAAGTCCCTGAAATAAATTGAGATAACAAACAATCCTCCATGCATAACAGTATTGAGTACTGGCCCCATTCGAGTTTAAGATAAAAGATTAAGTTCGGACAGGTAAAACGAGAAAATCATTAACATCTCACTAATTAAGGTTTAATTATTTTAAAATTGAAAAATAGATTTATCTTATAATTAAAGCTTCTATATAAATTTTTTTCGTTCGAAATATACAGTTCAACAGTTTAAAAAAACGAATTTATAAAAATCTAGGTAAAATCTGTATCTTAATCAGAAAAAGAAAAATAGAGGCTGAAGAAGCCTTGAGAGAGCAGTAGAGTATGGCACTGGGATGATGCCAAACTGCTTTCAGAACCGATTCACTGCTGCTGTTGGCATCTGCAGATTTGATGAGTTCAGCTCCAAAATGAAATCTGCATAAGCAAAGCATCATGAGTTCTGAAAAGCGAACTGTTTTTTTTTAAAAAATCTTACAGATATGAACTGTATTACAAGCAGCTGCGAAGCCACAAACCTATAGCTCTGGCAAATCCATCTGGGCAGCACCGAGTCGCCGGCGCGTGCTGCGTGGCGGCGGCAACGCCGGGAGGGACGAGGCGGGAGGATGAGAGCACCACGGCAATCCTCTGCACCGATGAGATGATGCTGCACATGTACTGCTGCGCCATGGCGGGCACGCTGCCCTGCAGGTGGCTCTCGAACGCGAACTGGAACGCGATCGTCATCACCGCCTTGGAGCTCGCCGCTGCTATTGATGCCGCTGATCCTGCTCCATGGCGTCGCTGCTTCGAGCATGGAAGCGAGATCTAGCATGCAGTTCGAGCTAGATGTGTCCTAACATTTGCAAGGAAAGAAAATCCAGAAGAATTATGTTTTTTATAGCATAAAAATTTTAGAAAATTTGATTCGAAATGCTAGTGTATTATCTAATTGTGTGAGATTTACTTACAGAGGAGAATCGATAGGGATGATGTAGAAACCGGAAGGCAGCAGCGGAGAATCATCACTGAACGATGCATCGATGGGTGCAAAGATTAGCTCTGAACATGTTCCTGCACTGCTCTCCTCTACTCCATTGTACATCTGCCATTGCAATCAGGCCAAGAACACAAGTTTTACAGAGGAAAAAAGAAAATGATTCTTCAACTGGTGATAAGTTTCATGAATCAAGAAGTCACCTGCAAGAGGAACAGATCACGGTGCACCAGTGTATCTTGGTAGTTTCTGGTGTTTCCTAGCTTGATAACTTCCAGGAACTGAAACAGTAGATGGTTGCACCAAAACATCGAGCAGGAAAACAGAATTGGACAGGACCTTTTTTGTAACCGACAGACAGTAGAAGATGGACTTACCTCTGCAGGTTCAAAAGTGTGTGCTAAAGGAAGTATGACCTGACCACTGAATCCTCCAAGACGAGACATGGGTAAATTGCAGAAGTTTGGTTTCATCGTCAGCCCATTGTGACTGGTGTTCGCGCAAAAATTGCAGTAGTGATGGAGGAGAGACATCCTAGCAAACAGCAGAAGAAATATTGTATGAAAAATATTGGCAATTACAAAACAAACAAAAAGAAAGTACTAATTCTAGTTTCATAGTGAAGCTAACCTGCAACAGCATGGATGCCTTGGCACAAAGAACACCGGTACTGACAATAGTGAGTCCACTGCTGAATGTTGCATTGCAACCGGTCACTTTGGATGAATTGACAGAGATGCAAACATCGTCGATGCCATCGCTCTCGATCACGGACCATCCATCATCCGCAAGCCCATTGAGAACTTCATTGAAGCCTCTGAAAAGAGAGCATGCAAAATTATTTTTCACACTTTTGAACTGAAGATTCATGGCAAGAACCAAGAAGCATCTGCTGTTCAGGAGTCCTACGTGGTGAGCTTTTTGGCTCAGAGCATGCAAAGCCGCAAGCTTCCTTCCCCATCCTGTGATCACAGAACGGGTATCTTTGTAGGCAACCTGCCTCAGGCAGCGTAAAGACTGAATTTTGCATGACTGAATTAGGCAATAATTTTTACAAATCAACAAGAACATCAAGAACAGGGTACTATAATTACTGTACCGCCATCGATATCTTCTGCGCAACCAAGGCAGAAGATTCATACAGAGGTCGCACAACTTCAGGCACGCTCCAAGGCTGTGAACACAAAAAAATTGGCTGAAATTTCTTTCTGCTAGATGAATGAACTATTTGGATAAGAAATTGTAATGGTTATTAGTTATTACCTCCAGGTCCATATGATCAACGATGTGTATCACGCTGCCTCCACCATCGCTAGGTCGGATCAAGAACCCACTGGGAAGCATCTCATCTCTGATAAAAGGCTGGACAAGTGGCATGCTTGGGCCTCCTTGCTTGCTACTGAGTGATCTCTCACACACCTTCAGAATTCAGAACAAGAACATTCAGGCAAGCAGACAAGACATCATAGTGACACACAAATACTTTGGTATTAATTGCACATCAGCACATGGATAATTTGTTTTGCGCTCCATGATCAGACAACTAACCACTAAGCTTCCATCACCGAGAATGGAGGTGTACCGCAGCAGCCAGAAGTCGTGAGCCGGCGCCAGCGTCGTCGGAGCATAGAGTTGAAGACTGAATACAGATTTCAGCTTCGGAATTTCAGGTTGAGCTAAGAATTTGCCACAAAAATTTTCAGGCTTGTCTGTTCTTGCCTGCATGTAGAGCAGCTTGACCTTCCATTTAGCACAACACTAATGAGTTAAATCAGAACATGAACAACCAGACAACTACCCTACCCCTGCATCAGAAACATGAAGCTGCACAGATAAGTTTTTATCTCAGTCGTCATAAAGCAGTGAAGAAAATCAAGCAAAAAATGTAATTGCACCAACGAGTGAGATGGACAGATTGTTGCACCTCATTAAAAATAAAAAGCCCCAAACCTCCTCTAAGTCAATGAAAATTATAGGGAATGCAATAAGCCACGAAATAATTGCATGCTAGAAAAAAGTGGCTTGAATAAACTAATCTGAGAGCTCCAGTCCACGGTTGGTTTCTCTTAAACATTGAATTATATGAAGGCCTCTATTCAATGGGTTTATTAGTATCAACTTGCATTTAACAGGAACAATGGCCACTACAACTGAAACAATGGTACAATACGATCATCAAAGATTCAAAGTTGTCAAGCTCTGTGACCAATAGATACTTACCTTTTAATTGAGTTGCCAATGCCCCAACGTTATAGCCTGATCCTTACCTTTCGGCTTCTTGCTATTACCACCCTACTACAATGCTATTTCTATCACCTGAAACAGTAAGAATCATGGAAAAAAGATTCTCGGTTAATGATGGCAAGGATTGAGACTCTGACCGTCCAAAAGAAATAGTTCATGCAGCAATAAGAAATTAAAAATCGGCATCAAGTACACGAGATAGCCAAATAATGGATCAGGGAAATGACATTTATTTGATCCCTGCAAAATTTGCACATGAACATACTACTTGCCTATAGATGATGGTGGTGTGGCCGTGTGGGCAATATTGGGTGCATATGAAAATGCTGCAAGAAAAAAAAAGGGTGCCCTTTATACCGATCAAGAAAAAGAAGTGCATTTTAGCTTGATCAAGAACTAACCCAAAAGCAGGCTACTCGTCAACACTGTTTCACTCCCTCTCAGTGATATGTGTTCATGTCTATTCGGCCAGCAAGCACATTGCGTTCGTCAATACATGCTGTCACTGCCCTTTTGATCGCCCGCAGAAGAGCCACCCCAGCATGCACGCAGACAACAAGACAACAACAAGCTTTGAGTTGAAGGGAAATCCAGATTATATATTTGATATTAGTTAATTCAGTGTCTCAAAAAATATCATCAACTCCAATTTGATGACCAAAAATCCTCTGCAAAACTGATAATTTTACAACCTTGATGCTACAGATCAAATAACAGGACTGAATGTGCCCTAGCTCCAAATATCACAATATAGGTGGTATGTGTTCCTATCGGGCTAACCTCACCTACTTCAGGGAAGAAATTGGTCAGCAGCCATACTTGGATAATGGCAGCATGACCGTCGCCGTGGCCTCGCACCGCCAGTGGCCGGCGCACGCGCAACACACCAGGTCCTTCCGCTTTGGTCACCACTTGCCACTCTTTGCCTCCATTAATGACACCACCTCAGCGACTAGCCACCATAGGTTTGGCCCCAACAATCACTTGAAATGAAAGTTGAGATTACAAATACGGCAAGCAGGAAAGCCGGTGAAATCAAACTGCAGCATCATGCCATTCTCCTCTCAAATATGGCCGTAAAGCAACACAAGAAGGGATGTTTTTACCTCTCAAATCTGTTTGCCGACACCGCCGCTGTGGTGGAGGAGGAGGCCACCATGTAACACAGAACATGTAACACAAGAAGGATGGCAGTGTTTTATCAGACTTGATTTGTACCTGAAGGGCGGCATGTTGGTGGGGAATGCGTAGATGCAGAGAACCATCTCCATCGGCCGGCATGCTTGGTCCGCCACAAACCGCACCGGATCTCATCGCTGTGTTCTTGTATCCGCCCCTGCCGAGGTCAGAGCACAATCCACACCGCTGCTGATTTACTCCAATCCATTCTTTCTATGAAAAGAAGAAAATCGAAATATCAAAAAAGGAACACAAAACTGAGTTCAACTTCAACCGCACATCATTATGCACGCTGCAAACCTTACCTCCGTGAGACACGCACCAACAGCGGGAAACACGACGATGATACCAGCAATGCAGCACCAAAGGATGGGGAGAAGCTGTGCCGCCAGTCGATCTGCGGCGCCCTCGCTTGATCCGCCGTTGGTCCCATTCGCACGAAAGGGGAAGAAATGAAGACATCAACCGAAGAGGCAGGGAGGGGAGAAGACAGAGCGACGCGACGAGGCGAGGACGAAGAAAGTATTGGGGTGGAGGCGCTCGAGGATGAGGAGGCCAGCGCGAGCTCGCATCCGGCGCTGCACCCGTCCCCCGCCGCCTACGCCGCGAACGCCGCGGCCGTGAGGACAAGGATGAGGAGGAAGGTGGAAGCTTCCACGGCGGGAGGTCGCTCGTGACGAAACCCTAGCGACGGGGCGGGGACGGGGATGGGGGCGGCGACGCGAGGCGTGGACGGGGGCAGTGGTGGCCGGCAACGGAGGCGGTGAAGGGCGGAGAATGGACCGGCGGCGGAGGAGGAGGATGGCTGAGGGAGAGGGAGGAGGGGCGGCGCGCGGGGCGGCGGCGGCGGCGGCGACGCGAGGCGGGAGAAGGAGAGGGAGAGGGCGAGACGGGGGACGGGAGGGAC
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| CDS seq | CTCATTAGTGTTGTGCTAAATGGAAGGTCAAGCTGCTCTACATGCAGTCTTCAACTCTATGCTCCGACGACGCTGGCGCCGGCTCACGACTTCTGGCTGCTGCGGTACACCTCCATTCTCGGTGATGGAAGCTTAGTGGTGTGTGAGAGATCACTCAGTAGCAAGCAAGGAGGCCCAAGCATGCCACTTGTCCAGCCTTTTATCAGAGATGAGATGCTTCCCAGTGGGTTCTTGATCCGACCTAGCGATGGTGGAGGCAGCGTGATACACATCGTTGATCATATGGACCTGGAGCCTTGGAGCGTGCCTGAAGTTGTGCGACCTCTGTATGAATCTTCTGCCTTGGTTGCGCAGAAGATATCGATGGCGGTTGCCTACAAAGATACCCGTTCTGTGATCACAGGATGGGGAAGGAAGCTTGCGGCTTTGCATGCTCTGAGCCAAAAAGCTCACCACAGGCTTCAATGA
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| Protein seq | LISVVLNGRSSCSTCSLQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMAVAYKDTRSVITGWGRKLAALHALSQKAHHRLQ |
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| Function | Homeobox-leucine zipper protein HOX29 [UniProtKB/Swiss-Prot:A2WLR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0722650 | OsNip_06t0722650-02 | Chr06 | 30686334 | 30692634 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGGCAAGAACAGACAAGCCTGAAAATTTTTGTGGCAAATTCTTAGCTCAACCTGAAATTCCGAAGCTGAAATCTGTATTCAGTCTTCAACTCTATGCTCCGACGACGCTGGCGCCGGCTCACGACTTCTGGCTGCTGCGGTACACCTCCATTCTCGGTGATGGAAGCTTAGTGGTGTGTGAGAGATCACTCAGTAGCAAGCAAGGAGGCCCAAGCATGCCACTTGTCCAGCCTTTTATCAGAGATGAGATGCTTCCCAGTGGGTTCTTGATCCGACCTAGCGATGGTGGAGGCAGCGTGATACACATCGTTGATCATATGGACCTGGAGCCTTGGAGCGTGCCTGAAGTTGTGCGACCTCTGTATGAATCTTCTGCCTTGGTTGCGCAGAAGATATCGATGGCGGTACAGTAA
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| Protein seq | MQARTDKPENFCGKFLAQPEIPKLKSVFSLQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMAVQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0722650 | OsNip_06t0722650-01 | Chr06 | 30686347 | 30692634 | - | RAP2018-11-26 | ||
| CDS seq | CTCATTAGTGTTGTGCTAAATGGAAGGTCAAGCTGCTCTACATGCAGTCTTCAACTCTATGCTCCGACGACGCTGGCGCCGGCTCACGACTTCTGGCTGCTGCGGTACACCTCCATTCTCGGTGATGGAAGCTTAGTGGTGTGTGAGAGATCACTCAGTAGCAAGCAAGGAGGCCCAAGCATGCCACTTGTCCAGCCTTTTATCAGAGATGAGATGCTTCCCAGTGGGTTCTTGATCCGACCTAGCGATGGTGGAGGCAGCGTGATACACATCGTTGATCATATGGACCTGGAGCCTTGGAGCGTGCCTGAAGTTGTGCGACCTCTGTATGAATCTTCTGCCTTGGTTGCGCAGAAGATATCGATGGCGGTTGCCTACAAAGATACCCGTTCTGTGATCACAGGATGGGGAAGGAAGCTTGCGGCTTTGCATGCTCTGAGCCAAAAAGCTCACCACAGGCTTCAATGA
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| Protein seq | LISVVLNGRSSCSTCSLQLYAPTTLAPAHDFWLLRYTSILGDGSLVVCERSLSSKQGGPSMPLVQPFIRDEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMAVAYKDTRSVITGWGRKLAALHALSQKAHHRLQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr06 | 30688508 | 30688838 | - | OsNip_06t0722650-02 | OsNip_06t0722650-02,OsNip_06t0722650-01 | All |
| RI | Chr06 | 30689214 | 30689478 | - | OsNip_06t0722650-02 | OsNip_06t0722650-02,OsNip_06t0722650-01 | All |
| A5 | Chr06 | 30691058 | 30691334 | - | OsNip_06t0722650-02 | OsNip_06t0722650-02,OsNip_06t0722650-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 2.570711 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0720500 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g50724 | RBH | 0.000000 | 0.000000 | 0.518665 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0720500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029450 | SBH | 0.000000 | 3.194318 | 3.662488 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029250 | SBH | 0.197496 | 0.999850 | 1.389304 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0029410 | SBH | 0.000000 | 0.905914 | 3.278390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006850 | SBH | 0.030096 | 0.086837 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0029430 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0480000 | SBH | 1.714918 | 6.6934605 | 7.8108575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0028740 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0462900 | SBH | 2.3962595 | 9.0691345 | 10.97311 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0029350 | RBH | 0.207276 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0029440 | SBH | 0.185216 | 2.430055 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028930 | SBH | 1.172194 | 8.175653 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0029570 | SBH | 0.393272 | 0.246605 | 0.446532 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0029260 | SBH | 0.000000 | 0.573828 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G029120 | SBH | 0.119635 | 1.984937 | 1.994878 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029280 | SBH | 1.419197 | 17.154709 | 7.117213 |
