Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0704700 | OGI:06083450 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:29762530-29766745 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAACGGAAGAATATATCATTACAGCCATCGAAATTGTTTCCTGAAGTCAATCTGTTGATCATCTTTACAAAAAGGGCCAAAGTGGCATATCATGTGAACTCCACACGGCTTCTATGGGGAAAAAAACATATGCTTTACAAGTTGAAAAGTATACACATTTTGATTTTGGCAAATATCTGAGTCTCAGAGACATATCAGTCAGGTGTTCTTCTCTAGAACAGATAATGCCGGTGTAAGATAGTTGTTAGCTTTATCTGGTAAATGGGCCACCTGCAGAAACATTCAGTACAAAATAAATTAGAATTGGGGGTGCAACTCTCAATTGGAGAAAGGAGATTAAGATTTAAGAGTTCCATCAGTTGTGGATTCAGAAATACTCACAAGTTCATATAGCTCATTCCCTTGCTTAGCTACATACTCGTAGCATACCTAAGTGAGTAGGGAATAACAAGTTAGTATTGCAACACTGATCATCCTATACAGAAGAAAGTGGAAGAAAGTTGCTTACATCAAAACTTTTGTTCCTAGCAGTGGAATCATGCAATGCTTTGACACAAATATCTGCTACATCGGCGCAACTGATACCCTATATTACAAGAAAGATCAGTTATTTATGTATGATGCTATCAACATATTATGGGAAAAGCAGACTCCTATAGTTTATGAAGGTTCACCTGCGAGATTCTGTTCCCTTGATCAAAGATCAATGCACGCTGACCACCAGGTTCTTCCTGGAAAAAAAAGGTTGAGTGATCATGATGCAACTGGTTTTAATGATATGTATACAGCAGTCTGCAAATACTGATCTCTAATTAATATCTTCTACTAACACATTATGTTCTAATGATTATTGAACATAGAATGGAAGTGGAGTGCTATTAGCTTAATAAATAATCTGAAAGCAGAATGTAAACTTATGAGCTCAAAGTGAAGCATTTCTGTCAGGAGGTCTATCAATACACCATACCTGCAGTGGACCAGGGCGTACTATTGTGTATCCAAGGCCTGACCTTCTCAATGCATCCTCTCCAGCCTAGAAATGTTCAAAGGTCCTTAATAATTTGATGAACATTTGAATTAGAGAAGTGTAAGCATTTTAAATGGTTATTAAAATTAAAACCTTTTTTGCTTTGAGGACTTGTTCTCTTCTGTTAGGTTCAATCCCAGAACCTGAGCATGAGACCAGAATGAAGTCTGTTTCTTGACCAGTCTGCAAAAGAAATAAAGAGATGCTTTTTAAACATAACCTAATTGAATTGCCTTCTCAATTCTGACAAAAATTCTTGACCAGTCTGCAAAAGAAATAAAGAGATGCTTTTATAACCTAATTGAATTGCCTTTTCAATTCTGACAAAAAAAAAGAGGTCATGTTTCCTACCAAAATAATCAGTGGGAATGTTGAAGGTATTTAAATTAAAAGAAGAGTTGGACACAACAAGAATTAAACAGGGAAGGAAATGAAAGTAGCGAAGCATGCCACAGACAATCAAACTAGGAACAACTTACAGGCAAAGCTTTGATGTATTCCAATATAAGCTCAAAATTTCTGGGGTCAGTAGCACTTTGAGATCCATCACCAGGTCTCTGCAGAATACATTAAAAGCTGAGCCACCAATTTCATGTTTAATCATCTCTACATTTATTACCTTAAGGTAACATTTCAAATAAATTCATTGTATTGTACTAACCTGTCTTTTGGGTTCAAACCTAATTGTTAGTGTATGCACAAGAAAAGGGTCTAGGGGAGGATCTTGAGGGTTTACTGGCCGAAAAGCTGAAAATGGTACCCTCACCTGCAGAAAAACAGAGAAGGCAAAAGAAATGGTCAATTCCTGAATTCTTTGATTTCTTAGATGGAAGCACAAGCATCTGATCATACAGCTTGGTTATTGAACACAACTTACCCTACAAAATCCTACTTTTGTAGTCATCCGAGCAAAGTACTTCTTGCTCTGGGAGGTGTCAGCCAGCGGACCAGTCTCAAGAATAACAACATATGATCTTCCATTTCCTCCCACCGAAAAAAGTAAGCCATCATACCTTTGTATACAGTGAAAGAATAACATGCCAAAGTTTTCAGTCTGATGTATAATATACGAAAATAAAATCAAAGAATCTTCTTAGTAAAATATACAAATCTTATCATACCTGTCTAGAGTAGATCCCAAAGGAAGAGATAGCCTTTTTGATATCTCAACATATCCACCTCTTGTGAAAACAAATCCTGATTAAAGGTTGTTTCGTAAGAATTGACATGGAAATGAAATCAGCACGTGTAGGCAACTCAAACTTAGTGCATTTGCAGAGAAGAAAGTCCTAAATCTACATAGCAGAAGGTGATACCTGAGAAAACAGCTTGACCAGCCTCTGAAAAGTCAAATGATGCATCGATACCTTCATCAAACCTAGAAGCAAATGTGTTTGGAAAATAAGATCCCTGGTCCACCTCCCAACCATTCAGAGACTTGGGAGATTTAAATTTTGCTATCAGGAGTTTGCTCTTGCTGCTTTTACCAGCCCTAAGCTGAGCCAATTCATTGTAGTAATCCTGCAGCGTAATGCAGAGCTGAGTTAAAGAAATTTTCAATGAGGCAAGAATACTCTCAAAATCAATAACATTACTACCGGTAAGATGATAAATTGAGGTCATAAGGAATACCTGGAAAGCCTTACTAACATTCCTTACTCCTTGATTATCAACCCTATTTAGGTCTCCAGTAATAGTTGAGCGTGCAGTTGCGCAATAGATTATCTTGCTGCAACCTGATACAGCCGATTTGACAGTTGAAGGATCACCAACATCACCGACAACAATATCCACCGACCTTGGGAGCATATCTATCACTTCAGCATCATTCCTTCTAACTAAAGCCTGTTATAATGTTAAAACCATGGTACGAACAGATCAGATAACCACCATCTGTAAATAATTTGCAAATTTTCAGAAACATTACTGTTCACTGTCCATTTCCAACATCGAAATGTTTTCCAATTTTGCTATTGATCACTCTTTGTTTCTCCATGTTCATTGTTAGGGAGTACCGAGTACGTATGCATATTACACGTTGCATACTTTGTCATATTCAACACAGACCTTAAATCCTGGAGAATTCAGCAAATGGGGATGAAGCAGACAACTAAATGCACACACATATCTAGAACCAACTAGATGAAGATATCAGGAACTATAGTTCAAAGCCATCAATTATCACTTTTCAGTATAGCAACAGTTTTGAAGTTGCATACATGGAAGGAAACAATCTGGATTCTAGACAGAGACATTGATGATATGAAACATCACAGATCATGTTAAATTCTTAAATCACACTCTCAACCAGTCCCTTGGAATGTTCATTTGTCAGTAAGATCAGATCAGTTCAGATATATTATTTGAACTGGAACTAGTATAATTAGCAGGGGAGTATAGATTAGATATAGCTGACCTTGACATTGTACCCGCGGAGCATGAGCTTGCGGACGACGATGCGGCCGATGCGGCTGGTGGCGCCGACGACGAGGACGGTGGTGTCCTGCGCGCCGGGGACGGTGAACTCGCACATGGGTCCGCCGCGGATGAGCACGGCCTGCTCCTCCTCCGCCAGCGCCGTCGACGACGCGCTCGACATCTGCCCCAGCCGCGAGAACTTGCGCCACACCTCGTCGAATATCTGCCGCGACCGCCGCCCTAGCCCCACGGGGCTCACCGCCATCACCTCGTCCAGGTCAAGCCCCGCCGCCTTCTCCTTCCTCTTCCCCTCCTCTCCATCCTCCTCCGTCTTCTTCTCCTTCACCTCCACCTCCTCCTCCTCCTCGAGCACCGCCGTCGTCCTGGTCTCCGACGACGACGACCTTTTCCCCTTCCTTCCTCGCCGGGATCGCGCCTTCTTACGCGGCTTCGCCTCCACCGCAGCATTGGCGGAAGCGACACCCGGCTCGGCCGCCCCTCCCTGATCCACCTCGGCGGCCACCTGCGTGGGCTTTGCGGCGAAGCAGCACGCGCCGCCGTGGTGGTGGTATCTCCTCCCCACCACCACCCCTCCTCCCGCGGACGGGCCGGCCGCCAGCGGGAGCGCCCGCGAGGGGGACGCGCAGTGGTGGTACGCGATGACGGCTGCGGCGCCGCCGCCGCCCGGAGGCGCCCGCGCGGCCACGATGGCGGCGGCCATGGATGGATGCTGCTGCGGCGGTGGAAAATTGGTTGCGAGATTGCACTGG
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| CDS seq | ATGGCCGCCGCCATCGTGGCCGCGCGGGCGCCTCCGGGCGGCGGCGGCGCCGCAGCCGTCATCGCGTACCACCACTGCGCGTCCCCCTCGCGGGCGCTCCCGCTGGCGGCCGGCCCGTCCGCGGGAGGAGGGGTGGTGGTGGGGAGGAGATACCACCACCACGGCGGCGCGTGCTGCTTCGCCGCAAAGCCCACGCAGGTGGCCGCCGAGGTGGATCAGGGAGGGGCGGCCGAGCCGGGTGTCGCTTCCGCCAATGCTGCGGTGGAGGCGAAGCCGCGTAAGAAGGCGCGATCCCGGCGAGGAAGGAAGGGGAAAAGGTCGTCGTCGTCGGAGACCAGGACGACGGCGGTGCTCGAGGAGGAGGAGGAGGTGGAGGTGAAGGAGAAGAAGACGGAGGAGGATGGAGAGGAGGGGAAGAGGAAGGAGAAGGCGGCGGGGCTTGACCTGGACGAGGTGATGGCGGTGAGCCCCGTGGGGCTAGGGCGGCGGTCGCGGCAGATATTCGACGAGGTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCGGAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGCGCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTCCGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAAGTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGTTGGTGATCCTTCAACTGTCAAATCGGCTGTATCAGGTTGCAGCAAGATAATCTATTGCGCAACTGCACGCTCAACTATTACTGGAGACCTAAATAGGGTTGATAATCAAGGAGTAAGGAATGTTAGTAAGGCTTTCCAGGATTACTACAATGAATTGGCTCAGCTTAGGGCTGGTAAAAGCAGCAAGAGCAAACTCCTGATAGCAAAATTTAAATCTCCCAAGTCTCTGAATGGTTGGGAGGTGGACCAGGGATCTTATTTTCCAAACACATTTGCTTCTAGGTTTGATGAAGGTATCGATGCATCATTTGACTTTTCAGAGGCTGGTCAAGCTGTTTTCTCAGGATTTGTTTTCACAAGAGGTGGATATGTTGAGATATCAAAAAGGCTATCTCTTCCTTTGGGATCTACTCTAGACAGGTATGATGGCTTACTTTTTTCGGTGGGAGGAAATGGAAGATCATATGTTGTTATTCTTGAGACTGGTCCGCTGGCTGACACCTCCCAGAGCAAGAAGTACTTTGCTCGGATGACTACAAAAGTAGGATTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCAGGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAAGAACACCTGA
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| Protein seq | MAAAIVAARAPPGGGGAAAVIAYHHCASPSRALPLAAGPSAGGGVVVGRRYHHHGGACCFAAKPTQVAAEVDQGGAAEPGVASANAAVEAKPRKKARSRRGRKGKRSSSSETRTTAVLEEEEEVEVKEKKTEEDGEEGKRKEKAAGLDLDEVMAVSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIVVGDVGDPSTVKSAVSGCSKIIYCATARSTITGDLNRVDNQGVRNVSKAFQDYYNELAQLRAGKSSKSKLLIAKFKSPKSLNGWEVDQGSYFPNTFASRFDEGIDASFDFSEAGQAVFSGFVFTRGGYVEISKRLSLPLGSTLDRYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFARMTTKVGFCRVRVPFSAFRPVNPQDPPLDPFLVHTLTIRFEPKRQRPGDGSQSATDPRNFELILEYIKALPTGQETDFILVSCSGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVRPGPLQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAKQGNELYELVAHLPDKANNYLTPALSVLEKNT |
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| Function | Protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic [UniProtKB/Swiss-Prot:Q8W4D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0704700 | OsNip_06t0704700-01 | Chr06 | 29762530 | 29766745 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGCCGCCATCGTGGCCGCGCGGGCGCCTCCGGGCGGCGGCGGCGCCGCAGCCGTCATCGCGTACCACCACTGCGCGTCCCCCTCGCGGGCGCTCCCGCTGGCGGCCGGCCCGTCCGCGGGAGGAGGGGTGGTGGTGGGGAGGAGATACCACCACCACGGCGGCGCGTGCTGCTTCGCCGCAAAGCCCACGCAGGTGGCCGCCGAGGTGGATCAGGGAGGGGCGGCCGAGCCGGGTGTCGCTTCCGCCAATGCTGCGGTGGAGGCGAAGCCGCGTAAGAAGGCGCGATCCCGGCGAGGAAGGAAGGGGAAAAGGTCGTCGTCGTCGGAGACCAGGACGACGGCGGTGCTCGAGGAGGAGGAGGAGGTGGAGGTGAAGGAGAAGAAGACGGAGGAGGATGGAGAGGAGGGGAAGAGGAAGGAGAAGGCGGCGGGGCTTGACCTGGACGAGGTGATGGCGGTGAGCCCCGTGGGGCTAGGGCGGCGGTCGCGGCAGATATTCGACGAGGTGTGGCGCAAGTTCTCGCGGCTGGGGCAGATGTCGAGCGCGTCGTCGACGGCGCTGGCGGAGGAGGAGCAGGCCGTGCTCATCCGCGGCGGACCCATGTGCGAGTTCACCGTCCCCGGCGCGCAGGACACCACCGTCCTCGTCGTCGGCGCCACCAGCCGCATCGGCCGCATCGTCGTCCGCAAGCTCATGCTCCGCGGGTACAATGTCAAGGCTTTAGTTAGAAGGAATGATGCTGAAGTGATAGATATGCTCCCAAGGTCGGTGGATATTGTTGTCGGTGATGTTGGTGATCCTTCAACTGTCAAATCGGCTGTATCAGGTTGCAGCAAGATAATCTATTGCGCAACTGCACGCTCAACTATTACTGGAGACCTAAATAGGGTTGATAATCAAGGAGTAAGGAATGTTAGTAAGGCTTTCCAGGATTACTACAATGAATTGGCTCAGCTTAGGGCTGGTAAAAGCAGCAAGAGCAAACTCCTGATAGCAAAATTTAAATCTCCCAAGTCTCTGAATGGTTGGGAGGTGGACCAGGGATCTTATTTTCCAAACACATTTGCTTCTAGGTTTGATGAAGGTATCGATGCATCATTTGACTTTTCAGAGGCTGGTCAAGCTGTTTTCTCAGGATTTGTTTTCACAAGAGGTGGATATGTTGAGATATCAAAAAGGCTATCTCTTCCTTTGGGATCTACTCTAGACAGGTATGATGGCTTACTTTTTTCGGTGGGAGGAAATGGAAGATCATATGTTGTTATTCTTGAGACTGGTCCGCTGGCTGACACCTCCCAGAGCAAGAAGTACTTTGCTCGGATGACTACAAAAGTAGGATTTTGTAGGGTGAGGGTACCATTTTCAGCTTTTCGGCCAGTAAACCCTCAAGATCCTCCCCTAGACCCTTTTCTTGTGCATACACTAACAATTAGGTTTGAACCCAAAAGACAGAGACCTGGTGATGGATCTCAAAGTGCTACTGACCCCAGAAATTTTGAGCTTATATTGGAATACATCAAAGCTTTGCCTACTGGTCAAGAAACAGACTTCATTCTGGTCTCATGCTCAGGTTCTGGGATTGAACCTAACAGAAGAGAACAAGTCCTCAAAGCAAAAAAGGCTGGAGAGGATGCATTGAGAAGGTCAGGCCTTGGATACACAATAGTACGCCCTGGTCCACTGCAGGAAGAACCTGGTGGTCAGCGTGCATTGATCTTTGATCAAGGGAACAGAATCTCGCAGGGTATCAGTTGCGCCGATGTAGCAGATATTTGTGTCAAAGCATTGCATGATTCCACTGCTAGGAACAAAAGTTTTGATGTATGCTACGAGTATGTAGCTAAGCAAGGGAATGAGCTATATGAACTTGTGGCCCATTTACCAGATAAAGCTAACAACTATCTTACACCGGCATTATCTGTTCTAGAGAAGAACACCTGA
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| Protein seq | MAAAIVAARAPPGGGGAAAVIAYHHCASPSRALPLAAGPSAGGGVVVGRRYHHHGGACCFAAKPTQVAAEVDQGGAAEPGVASANAAVEAKPRKKARSRRGRKGKRSSSSETRTTAVLEEEEEVEVKEKKTEEDGEEGKRKEKAAGLDLDEVMAVSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGPMCEFTVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIVVGDVGDPSTVKSAVSGCSKIIYCATARSTITGDLNRVDNQGVRNVSKAFQDYYNELAQLRAGKSSKSKLLIAKFKSPKSLNGWEVDQGSYFPNTFASRFDEGIDASFDFSEAGQAVFSGFVFTRGGYVEISKRLSLPLGSTLDRYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFARMTTKVGFCRVRVPFSAFRPVNPQDPPLDPFLVHTLTIRFEPKRQRPGDGSQSATDPRNFELILEYIKALPTGQETDFILVSCSGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVRPGPLQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAKQGNELYELVAHLPDKANNYLTPALSVLEKNT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.887672 | 2.331399 | 2.088872 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0137700 | RBH | 10.691051 | 11.010221 | 7.818889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49120 | RBH | 1.940875 | 1.560241 | 0.535035 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0704700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028370 | RBH | 0.422644 | 1.166045 | 1.483661 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028190 | RBH | 1.100886 | 0.0 | 1.086214 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028330 | RBH | 0.598525 | 0.0 | 2.888035 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027920 | RBH | 0.047743 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028410 | RBH | 23.906902 | 0.0 | 11.964710 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0467900 | RBH | 10.033544 | 6.0683225 | 5.1975795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027780 | RBH | 0.168711 | 0.000000 | 1.289842 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0451400 | SBH | 26.860207 | 9.653508 | 8.8562985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028320 | RBH | 1.231970 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028370 | RBH | 2.274382 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027960 | RBH | 9.077450 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028620 | RBH | 0.684971 | 0.0 | 3.207551 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028240 | RBH | 0.338146 | 0.630590 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028120 | RBH | 0.141352 | 0.000000 | 1.527726 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028200 | RBH | 0.000000 | 0.0 | 8.050097 |
