Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0660800 | OGI:06076660 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:27229831-27233081 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAATATAGAGAATAATTTGTTTTCTGGACCAGTGCCTCCAAAGTTGCAGAGCATACCAAACTTCAAGTAAGATTTTTTTTCTTGTATTCAATTTCCTTTTGATGTCAGCCAGTTCAATTATAATCATTATCTTGTCTATCTTGACGTTATTTTATCTAATACAAGCTAAAAAAAACTAATCACAACAATTCTGTATGGCTTGTTAAGTGACTAACATTGTACAAATGCAGAAAGGATGGGAATCCATTTAATACCAGTATAGCTCCTTCTGCATCACCACCATCAACACCCGGAGGACCAGCACCAACTCCAACACCAACGAGACCAGCACCAAGTCCGTCACCAACAGGACCTCCAACACCATCACCAACCAATCCAAATCTAGAACCATCACCACCACCTCCATCCTCTTCAGCCCCTCCATCTAGAACACCCTCAAACTCTTCTGACGGGCCAACTACTCGAGACAACATTTCATCATCTAAGAAACAGAATTCATCAACCCTCAAAATTGTCGGATTTGTTTTTCTTGGAGTAGTGCTGTTCATAGTTACAGTCCTGCTGGTGATATTTTGTTTGTCCAAGTACCAAGAGAGAAGGTCAAGGTATGATTATAACAGAAGTCAATTGGCAAGGGTGCATCATACAGTTGAACACAGAATCAACCCGTCTATAGTGCAACCAAGGGATGATGCTAAAAAAGGTAACTTATGTTGAATTCCCAGTAGCATAATATAGATTTCGGTTACTTTTGGCATTCATATGAAGTGTTATTTGACATGTTCAGATCAGCAAAGTTTGGCAGCTGTCCCTAAGAAGCCTCTTGAAAGCCAAAGAGAACACATAATTGATTTGGAGCACCCAAATAATTTGGCGCGTACAAATTCAGAACTTTTTGCAGTTGATCCACCACCCCCACCACCCCCTCCTTTCCTGCCACCATTCCCTGTTGAAAAAGTTACTGTAAATCCTGTTGTTCCTCCAGAAAAGAGATACATATCTCCACCAAGGATAAATAAACCAACTTCTGCCACTTCATTCTCTGTGGCATCTCTTCAGCAATATACAAGCAGTTTCAGAGAGGAGAATTTGATAAGAAAGAGTAGACTAGGAAAGGTATACCTAGCAGAGTTTCCTGAAGGAAAGGTGTGTGCTAACCACTAAGTATTACCTATCCTAATGAGAAGTGTGATGCATTATATTCAGTGTGCAGTTAAAATATTAACCATGATTCCTGCTATTCTGTGTAGTTTTTGGAAGTAATGAAGATTGACAATACTAATGGAAGAATATCAGTAGATGAATTTCTAGACCTGGTTCAGCTTGTCTCGGATATCAGGCATCCTAACATCCATGAGTTAGTTGGATATTGTGCTGAATATGGGCAGCGGTTACTTGTGTACAATCACTTTAGTACAAAAACACTAGATGATGCACTTCATGATAGAGAGGGAGTTGATAGTACACTGTCATGGAATGCTCGCCTCCAGGTTGCTCTTGGTTCAGGAAAGGCCTTAGAGTGAGTAAAATTATGGTTCTATGTTTAATGTAATCCATGTATGGCTTTCATTTTTTCAACCTTTGTACTTCCTTTCCTGTAGGTATCTCCATGAAAGCTTCCAGCCTCCAATTGTGCATCAGAACTTTGAACCGGCTAATGTACTCCTTGATAATAAATTTTCAGTGCGTGTTGCTGAATGTGGACTAGAAAAATTGTTGGCATCAAGTTCTGTCACTCAGGTAAGATACAATATGTGTGATAAGTTGTTCCATGTATTTATTGAAGTGCTGAAGTTGCCATAGCTGAAGCATTTAAATTTAGAACATGTAAAGAGTGATTTACATTTTATAGTCCTTGAGGAGGTACCAACAGGTCCTTAGGTGTGACTAAGCTTATTGGAAATTTCCTTAAATAAACCTTACTAGAGAATTCTTCTCTACCCGTTGGTTGGAAATAATTAAATTTTGATTCACTGGCAATTACTTTTACTATGCTGCTAGACTAGTTGATGCCATGCTTTGTTGTTTGATCACAAATGAGTAGATTTAGCTAATTTAATTTTGCTAGGCAGTGAAGAAATCATCTTGTTATGTTGATGGAAATGACAGCTGGTGCACTTACAGCTTGTATGTTCTTGTTCCAGTTGGCAGATCGAATGCATTCACTGTTGAACTATGAACCACCGGAATTCCGGGAATCTGGGATAGTTACAGAACAAGGTGATGTTTACAGTTTTGGAGTAGTGATGCTAGAAATTCTTACTGGGCGTAAACCATACGACAGGTAAGAAAAATTTAAAGTCTCATTCTCTCATGATGTTTGATCAGGAGTTCAAGAGCTGTCCGTAATTGTTTTAGATCAAAATTTTAGTGCGAAACGAGGAAAGAACTATTTGATTAACATGCCTGTTTTATCCTCAAAAAAAATTTCAGTTCACTCCCACGTGCTGAGCAACATCTTGTTAGATGGGCCAATTCTCAGCTTCATGACATAGAATCACTGTCCAGGATGGTGGACCCTTCTATACAAGGGCAATGTTCTGAGAAAGCACTGTCACGATTTGCTGACATAATCAGCGGGTGTATCCGGGTAATTGATGTGTATTTTCTTCATTCGTACTGGAACTGCATTTGCAAGCATACTAGTATTACGCATGCACATGTTCCAATGCTTTACATTCTTTGCACAAAGCGTTTTGAGTACTAGGGATCATGTGTAAAATCTGAAACTTTCCTAATGGAGCAGGAACCACAATTCAGGCCACCAATGTCTGAAGTTGTCCAAGACCTAGCTAGAATGGTAAATGAAACTGGTGAGGAATCGGAGTAACACAAAACAAAAATCAAGGACATACAGATCTCGAGCGCCTGCTGAGTTGCCTGTAGATACTGGGAGGAAATTCTTTCGGCACATTCTGGGGAGAATTCTGGCAAAGAACATTATTTTCCCTAGAGCAGTATACACTAACACCATAACGTGTGTCAACTTGGAGCCACATTTACACAGGAAAGGATACTGGAGGTACAGCCAACATGTACTTAGTTGTTGCAAATTTGAAATTGATGTATTCTTTTGCAGACATGATATTATATCATTACCCCCTTCTTGTAACCAACATTCATGATTTGGTTCAATTTTGTGCCATAGGGCTACTTTCTTGCTTGTGTTTCATGTTATGTATATCGTCTGTAGACCTGGGGAAAAAGTGGCCCGGCCTTCATATTCTGTAATGATCTGTTTTATTTGCTGC
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| CDS seq | ATTGTGCATCAGAACTTTGAACCGGCTAATGTACTCCTTGATAATAAATTTTCAGTGCGTGTTGCTGAATGTGGACTAGAAAAATTGTTGGCATCAAGTTCTGTCACTCAGTTGGCAGATCGAATGCATTCACTGTTGAACTATGAACCACCGGAATTCCGGGAATCTGGGATAGTTACAGAACAAGGTGATGTTTACAGTTTTGGAGTAGTGATGCTAGAAATTCTTACTGGGCGTAAACCATACGACAGTTCACTCCCACGTGCTGAGCAACATCTTGTTAGATGGGCCAATTCTCAGCTTCATGACATAGAATCACTGTCCAGGATGGTGGACCCTTCTATACAAGGGCAATGTTCTGAGAAAGCACTGTCACGATTTGCTGACATAATCAGCGGGTGTATCCGGGAACCACAATTCAGGCCACCAATGTCTGAAGTTGTCCAAGACCTAGCTAGAATGGTAAATGAAACTGGTGAGGAATCGGAGTAA
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| Protein seq | IVHQNFEPANVLLDNKFSVRVAECGLEKLLASSSVTQLADRMHSLLNYEPPEFRESGIVTEQGDVYSFGVVMLEILTGRKPYDSSLPRAEQHLVRWANSQLHDIESLSRMVDPSIQGQCSEKALSRFADIISGCIREPQFRPPMSEVVQDLARMVNETGEESE |
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| Function | Protein STRUBBELIG-RECEPTOR FAMILY 3 [UniProtKB/Swiss-Prot:Q6R2K3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0660800 | OsNip_06t0660800-01 | Chr06 | 27231460 | 27232940 | + | RAP2018-11-26 | ||
| CDS seq | ATTGTGCATCAGAACTTTGAACCGGCTAATGTACTCCTTGATAATAAATTTTCAGTGCGTGTTGCTGAATGTGGACTAGAAAAATTGTTGGCATCAAGTTCTGTCACTCAGTTGGCAGATCGAATGCATTCACTGTTGAACTATGAACCACCGGAATTCCGGGAATCTGGGATAGTTACAGAACAAGGTGATGTTTACAGTTTTGGAGTAGTGATGCTAGAAATTCTTACTGGGCGTAAACCATACGACAGTTCACTCCCACGTGCTGAGCAACATCTTGTTAGATGGGCCAATTCTCAGCTTCATGACATAGAATCACTGTCCAGGATGGTGGACCCTTCTATACAAGGGCAATGTTCTGAGAAAGCACTGTCACGATTTGCTGACATAATCAGCGGGTGTATCCGGGAACCACAATTCAGGCCACCAATGTCTGAAGTTGTCCAAGACCTAGCTAGAATGGTAAATGAAACTGGTGAGGAATCGGAGTAA
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| Protein seq | IVHQNFEPANVLLDNKFSVRVAECGLEKLLASSSVTQLADRMHSLLNYEPPEFRESGIVTEQGDVYSFGVVMLEILTGRKPYDSSLPRAEQHLVRWANSQLHDIESLSRMVDPSIQGQCSEKALSRFADIISGCIREPQFRPPMSEVVQDLARMVNETGEESE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0660800 | OsNip_06t0660800-02 | Chr06 | 27229831 | 27233081 | + | IsoSeq | ||
| CDS seq | ATGAAACTGGTGAGGAATCGGAGTAACACAAAACAAAAATCAAGGACATACAGATCTCGAGCGCCTGCTGAGTTGCCTGTAGATACTGGGAGGAAATTCTTTCGGCACATTCTGGGGAGAATTCTGGCAAAGAACATTATTTTCCCTAGAGCAGTATACACTAACACCATAACGTGTGTCAACTTGGAGCCACATTTACACAGGAAAGGATACTGGAGGTACAGCCAACATGTACTTAGTTGTTGCAAATTTGAAATTGATGTATTCTTTTGCAGACATGATATTATATCATTACCCCCTTCTTGTAACCAACAT
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| Protein seq | MKLVRNRSNTKQKSRTYRSRAPAELPVDTGRKFFRHILGRILAKNIIFPRAVYTNTITCVNLEPHLHRKGYWRYSQHVLSCCKFEIDVFFCRHDIISLPPSCNQH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.216086 | 1.299434 | 0.777980 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0176100 | RBH | 4.663598 | 4.861667 | 14.109595 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45020 | RBH | 0.884692 | 0.659158 | 0.178521 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0660800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025150 | RBH | 0.064639 | 33.275528 | 2.919664 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0024960 | RBH | 0.121131 | 4.621551 | 0.890049 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025130 | RBH | 0.210643 | 23.126112 | 4.413460 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0024720 | RBH | 0.023528 | 0.729275 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025180 | RBH | 0.715578 | 14.928616 | 8.904454 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0426500 | RBH | 3.354848 | 15.070463 | 15.934412 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0024680 | RBH | 0.000000 | 1.601157 | 0.708496 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0409600 | RBH | 5.4961545 | 27.93843 | 6.1171885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025100 | RBH | 0.054288 | 0.431390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025100 | RBH | 0.000000 | 11.393755 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0024750 | RBH | 4.028705 | 14.809315 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0025350 | RBH | 2.822595 | 1.580048 | 1.002966 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0024990 | RBH | 0.703513 | 13.780277 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G024850 | RBH | 0.214680 | 4.130779 | 1.548409 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0024960 | RBH | 0.000000 | 32.638927 | 3.338268 |
