Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0642500 | OGI:06073840 | 9/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:26155464-26159072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTCCTCTCACTCCTCACTCCATCCACTCGCATCCCCCTCCCCTCTCGCCCTCTCCCGCCTCCTCCTCCTTCTCCTGGCAGCGATGCGCTGACAGCGGCAGCGATCGCAAGGAGGCAGCGGCAGTGGCCCCTTCTCCAGCGGCGGCTACCCCCTTCTCCTTGCAGCGGTACCTTCTCCCGGTAGCGGTGGCGGCTGCAAGGAGACAGCGGCGGCGGCCGCAAGGAGGCAGTGGTGGAGGTCCCCTTCTCATTGCAGCGGCGGTGGCCCCTTCTTCTGGTAGATATCATGCCAACGTCAGCGAGATGTCAGCATGAAACCTAGGCACAGATGCCATGCTTCTTCCATGTTCTCATGTTGAAAATTCATGCCAATTATTTCTATCACACTCAATGACGATTGCGGCGGCGAAGCCTGCAATTAACACTACATATTGCCTTGTGCAGGTGATATCATCACCAATTCACCATTAGCTATCTTACTTGCCTCCTATAAATACCCTCAGCCGGAAGGGTTATTCGTATGCATCAAAAACACACAACGCTAACTCATCACGAGTTTGATACACATAGTAATCCTACGTAATCAAGCTTAGATTGTGTTAATCAACTCAATACTGCAAAAAATCGTTTTTGCAGGCGGTCAAATTAGGGTAAATTAAGTGACTGTAAGCTTTGTTAAACGCCATGGATTTGATGAAGAGTAATCCGCTTCAGGGGAGCCCATGGAGCTTGTTGAACTTGCTGGTATTGATCATTGTCGCCGCCATGATCTGCGGCGAGCTATGTCGTCGTCGTCGTCGTCGTCGTGGCGACGAGAATGGTGGCGCCACGAGGCTGCCTCCGGGGCCATGGCGGCTGCCGTTCGTCGGCAGCCTGCACCACCTCGCGGTGATGAGGCCGCGCGGGGTGGTGGTGCACCGCGCGCTGGCCGAGCTGGCGCGGCGGCACGACGCCCCCGTCATGTACCTCCGCCTCGGCGAGCTCCCCGTCGTGGTGGCGTCGTCGCCGGAGGCCGCGCGCGAGGTCCTCAAGACGCACGACGCGGCGTTCGCCACCCGCGCCATGAGCGTCACGGTGAGGGAGTCCATCGGCGACAAGGTCGGCATCCTCTTCTCCCCCTACGGCAAGAAGTGGCGCCAGCTCCGCGGCATCTGCACCCTCGAGCTGCTCAGCGTGAAGCGGGTGCGCTCGTTCCGCCCCATCCGGGAGGAGCAGGTCGCCCGCCTCGTCGACGCCATCGCCGCCGCCGCGGCGTCGTCCACGGCGGAGGCGGCGGCGGTGAACATCAGCAGGCAGATCACCGGGCCGATGACGGACCTGGCGCTGCGCGCAATCATGGGGGAGTGCTTCCGGTGGCGGGAGGAGTTCCTGGAGACGCTGGCGGAGGCGCTCAAGAAGACGACCGGGCTCGGCGTCGCCGACATGTTCCCGTCGTCGCGGCTCCTCCGCGCCGTCGGGAGCACGGTGCGCGACGTGAAGCTGCTGAACGCCAAGCTGTTCGAGCTGGTGGAGTGCGCCATCGAGCAGCATCGGGAGCAGATTAGAGCGGCTCACGACAACGGCGGCGACGACGACGACGCGCATGGCCATGGCGACAAGGAGTGCTTCCTGAATACTCTGATGAGAATTCAGAAGGAAGGTGATGATCTTGATGACACTCACCATGGCAACCGTCAAAGCTGTCATTCTTGTAAGTATCTACACTACACTAGCTACTACCTCCATCAATTTTTATAGGACTTGCTTTATTTTGAAAAAATCATCGATACTTTTATTAATAGACGTGAAGCTATATTATTTTGTATGTAGTGCCTATATTTCAGGCGCCTAAAATTTCTTAAAAAATTGTTACTTTTTCATCCCTAAGATAAACAATCCAATGGTTCTCATCACTTATCTATCACTACTTCCATCCCATAATATAGTAAATAGTACCATATGATAAGACATATTCCGGTACCACGAATCTGAATAACTCATGTCTAAATTTGTAGTCCTAAAATATCTCATGCAGTACTAGCTAGGTTACTATGGTATAGGATGGAGGGAGTATTTATTACTTATAATTCTCCCATGGTTGGTTAATAAATTATTCTAACAAAAACTTTACAATATTACATCAAACCAACTTATAACTCATTAAAATTTACAAAATTGCATGCAAAAAAATTCAGAAAAAGACGCAAATAAAGTAAAATTAATCATGTGTAACTCCAAAATTGTAGTTAAGATGAACTTAAATTCCATATTGAATAAGGCTTAGTAATATGAAATTTTAGGTTACCGAAAATATACAAATTTTTAGGCATCTAAAATCTAGCAAATCTCTATTTAATTTCTAAGAGTCGTTTGCAATATGAATCTATTGGTACACTAAATATACTTGCAATTTGACAAAATTATTGACAACATAAAGTGGCAAGTATAGATTTGTGTCTTGAAAAGAATTTCATAATCTCCAAAGATTTATTAGATTTCATAAAATTATCCAATATATAAAATTATGGTCAAAGTCACACTTTAAATACCGTGGAAAAAACTCCAATGTCAAGTATCTTTTATCAGAGGGAGTATATATTTATGTATATATGGCTTCCCGCCTTGTGCTTTCCTTCCTATCCTCCATCAACAGAATGTATAAATTTTATGTAGCACTGTAAATATGCATGTTTCCTTTTAACATGCACTAACATATGCATGACATGCATTGGCCAGGACATGTTTGCAGGTGGAAGTGAATCAACATCAACAACACTTGAATGGGCCCTGTCAGAGCTTGTGAGGAACCCTCATGTGATGCAAAAGGCACAAGCAGAGATACGACATGCTTTGCAAGGCAGGACTAGGGTAACTGAAGATGATTTAATTAATTTAAAGTACCCAAAGAACATAATCAAGGAAACACTACGGTTACACCCTGTAGCACCTCTACTTGTCCCAAAAGAGTGTCAGGAGTCGTGTAAAATCCTCGGCTATGATGTTCCTAAGGGAACAATCATGTTCGTAAATGCATGGGCTATCGGCAGAGACCCTAGATATTGGAACGATGCAGAAGTGTTTATGCCAGAGCGTTTTGAGAAAGTTGCAGTTGATTTCAGAGGCACAAACTTTGAGTTCAAACCATTTGGAGCAGGACGGAGGATGTGCCCAGGAATAACATTTGCAAATGCAACAATCGAAATGGCCCTCACTGCTCTTCTATACCACTTCGATTGGCATCTCCCTCCAGGTGTAACACCGGATGGGTTGGACATGGAGGAGGAATTCGGCATGAGCGTTTCAAGGAAAAGGGATCTTTATCTACGACCGACACTCCATATGGGACTTGAAACAATATGATGAATACACGCGTGTTGTCATGGAAAATGTTGATAATAGCCGAATGGTGTATGTACCTAGTAGAAAAAAAATACTTTCTGCAAATTATAGTACCTATACTTACAAGATGTTTGGGAGGTAGGAACTCCTGAGATATTCAGATATTCCAGAGCTCCGAGTGCATTAGTATAGAAATTCATGCACGAACACAATATATATAAGGCGTTGCTGTCATGTACAAGAGCTGTGTTTTTTAAAGATAAAAGTACTGTACGTTTCCAGTTGTAATGT
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| CDS seq | CGGTGGCGGCTGCAAGGAGACAGCGGCGGCGGCCGCAAGGAGGCAGTGGTGGAGGTCCCCTTCTCATTGCAGCGGCGGTGGCCCCTTCTTCTGGGGAGCCCATGGAGCTTGTTGAACTTGCTGGTATTGATCATTGTCGCCGCCATGATCTGCGGCGAGCTATGTCGTCGTCGTCGTCGTCGTCGTGGCGACGAGAATGGTGGCGCCACGAGGCTGCCTCCGGGGCCATGGCGGCTGCCGTTCGTCGGCAGCCTGCACCACCTCGCGGTGATGAGGCCGCGCGGGGTGGTGGTGCACCGCGCGCTGGCCGAGCTGGCGCGGCGGCACGACGCCCCCGTCATGTACCTCCGCCTCGGCGAGCTCCCCGTCGTGGTGGCGTCGTCGCCGGAGGCCGCGCGCGAGGTCCTCAAGACGCACGACGCGGCGTTCGCCACCCGCGCCATGAGCGTCACGGTGAGGGAGTCCATCGGCGACAAGGTCGGCATCCTCTTCTCCCCCTACGGCAAGAAGTGGCGCCAGCTCCGCGGCATCTGCACCCTCGAGCTGCTCAGCGTGAAGCGGGTGCGCTCGTTCCGCCCCATCCGGGAGGAGCAGGTCGCCCGCCTCGTCGACGCCATCGCCGCCGCCGCGGCGTCGTCCACGGCGGAGGCGGCGGCGGTGAACATCAGCAGGCAGATCACCGGGCCGATGACGGACCTGGCGCTGCGCGCAATCATGGGGGAGTGCTTCCGGTGGCGGGAGGAGTTCCTGGAGACGCTGGCGGAGGCGCTCAAGAAGACGACCGGGCTCGGCGTCGCCGACATGTTCCCGTCGTCGCGGCTCCTCCGCGCCGTCGGGAGCACGGTGCGCGACGTGAAGCTGCTGAACGCCAAGCTGTTCGAGCTGGTGGAGTGCGCCATCGAGCAGCATCGGGAGCAGATTAGAGCGGCTCACGACAACGGCGGCGACGACGACGACGCGCATGGCCATGGCGACAAGGAGTGCTTCCTGAATACTCTGATGAGAATTCAGAAGGAAGGTGATGATCTTGATGACACTCACCATGGCAACCGTCAAAGCTGTCATTCTTGA
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| Protein seq | RWRLQGDSGGGRKEAVVEVPFSLQRRWPLLLGSPWSLLNLLVLIIVAAMICGELCRRRRRRRGDENGGATRLPPGPWRLPFVGSLHHLAVMRPRGVVVHRALAELARRHDAPVMYLRLGELPVVVASSPEAAREVLKTHDAAFATRAMSVTVRESIGDKVGILFSPYGKKWRQLRGICTLELLSVKRVRSFRPIREEQVARLVDAIAAAAASSTAEAAAVNISRQITGPMTDLALRAIMGECFRWREEFLETLAEALKKTTGLGVADMFPSSRLLRAVGSTVRDVKLLNAKLFELVECAIEQHREQIRAAHDNGGDDDDAHGHGDKECFLNTLMRIQKEGDDLDDTHHGNRQSCHS |
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| Function | Cytochrome P450 71D7 [UniProtKB/Swiss-Prot:P93531] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0642500 | OsNip_06t0642500-01 | Chr06 | 26155464 | 26158932 | + | RAP2018-11-26 | ||
| CDS seq | CGGTGGCGGCTGCAAGGAGACAGCGGCGGCGGCCGCAAGGAGGCAGTGGTGGAGGTCCCCTTCTCATTGCAGCGGCGGTGGCCCCTTCTTCTGGGGAGCCCATGGAGCTTGTTGAACTTGCTGGTATTGATCATTGTCGCCGCCATGATCTGCGGCGAGCTATGTCGTCGTCGTCGTCGTCGTCGTGGCGACGAGAATGGTGGCGCCACGAGGCTGCCTCCGGGGCCATGGCGGCTGCCGTTCGTCGGCAGCCTGCACCACCTCGCGGTGATGAGGCCGCGCGGGGTGGTGGTGCACCGCGCGCTGGCCGAGCTGGCGCGGCGGCACGACGCCCCCGTCATGTACCTCCGCCTCGGCGAGCTCCCCGTCGTGGTGGCGTCGTCGCCGGAGGCCGCGCGCGAGGTCCTCAAGACGCACGACGCGGCGTTCGCCACCCGCGCCATGAGCGTCACGGTGAGGGAGTCCATCGGCGACAAGGTCGGCATCCTCTTCTCCCCCTACGGCAAGAAGTGGCGCCAGCTCCGCGGCATCTGCACCCTCGAGCTGCTCAGCGTGAAGCGGGTGCGCTCGTTCCGCCCCATCCGGGAGGAGCAGGTCGCCCGCCTCGTCGACGCCATCGCCGCCGCCGCGGCGTCGTCCACGGCGGAGGCGGCGGCGGTGAACATCAGCAGGCAGATCACCGGGCCGATGACGGACCTGGCGCTGCGCGCAATCATGGGGGAGTGCTTCCGGTGGCGGGAGGAGTTCCTGGAGACGCTGGCGGAGGCGCTCAAGAAGACGACCGGGCTCGGCGTCGCCGACATGTTCCCGTCGTCGCGGCTCCTCCGCGCCGTCGGGAGCACGGTGCGCGACGTGAAGCTGCTGAACGCCAAGCTGTTCGAGCTGGTGGAGTGCGCCATCGAGCAGCATCGGGAGCAGATTAGAGCGGCTCACGACAACGGCGGCGACGACGACGACGCGCATGGCCATGGCGACAAGGAGTGCTTCCTGAATACTCTGATGAGAATTCAGAAGGAAGGTGATGATCTTGATGACACTCACCATGGCAACCGTCAAAGCTGTCATTCTTGA
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| Protein seq | RWRLQGDSGGGRKEAVVEVPFSLQRRWPLLLGSPWSLLNLLVLIIVAAMICGELCRRRRRRRGDENGGATRLPPGPWRLPFVGSLHHLAVMRPRGVVVHRALAELARRHDAPVMYLRLGELPVVVASSPEAAREVLKTHDAAFATRAMSVTVRESIGDKVGILFSPYGKKWRQLRGICTLELLSVKRVRSFRPIREEQVARLVDAIAAAAASSTAEAAAVNISRQITGPMTDLALRAIMGECFRWREEFLETLAEALKKTTGLGVADMFPSSRLLRAVGSTVRDVKLLNAKLFELVECAIEQHREQIRAAHDNGGDDDDAHGHGDKECFLNTLMRIQKEGDDLDDTHHGNRQSCHS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0642500 | OsNip_06t0642500-02 | Chr06 | 26155564 | 26159072 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATTTGATGAAGAGTAATCCGCTTCAGGGGAGCCCATGGAGCTTGTTGAACTTGCTGGTATTGATCATTGTCGCCGCCATGATCTGCGGCGAGCTATGTCGTCGTCGTCGTCGTCGTCGTGGCGACGAGAATGGTGGCGCCACGAGGCTGCCTCCGGGGCCATGGCGGCTGCCGTTCGTCGGCAGCCTGCACCACCTCGCGGTGATGAGGCCGCGCGGGGTGGTGGTGCACCGCGCGCTGGCCGAGCTGGCGCGGCGGCACGACGCCCCCGTCATGTACCTCCGCCTCGGCGAGCTCCCCGTCGTGGTGGCGTCGTCGCCGGAGGCCGCGCGCGAGGTCCTCAAGACGCACGACGCGGCGTTCGCCACCCGCGCCATGAGCGTCACGGTGAGGGAGTCCATCGGCGACAAGGTCGGCATCCTCTTCTCCCCCTACGGCAAGAAGTGGCGCCAGCTCCGCGGCATCTGCACCCTCGAGCTGCTCAGCGTGAAGCGGGTGCGCTCGTTCCGCCCCATCCGGGAGGAGCAGGTCGCCCGCCTCGTCGACGCCATCGCCGCCGCCGCGGCGTCGTCCACGGCGGAGGCGGCGGCGGTGAACATCAGCAGGCAGATCACCGGGCCGATGACGGACCTGGCGCTGCGCGCAATCATGGGGGAGTGCTTCCGGTGGCGGGAGGAGTTCCTGGAGACGCTGGCGGAGGCGCTCAAGAAGACGACCGGGCTCGGCGTCGCCGACATGTTCCCGTCGTCGCGGCTCCTCCGCGCCGTCGGGAGCACGGTGCGCGACGTGAAGCTGCTGAACGCCAAGCTGTTCGAGCTGGTGGAGTGCGCCATCGAGCAGCATCGGGAGCAGATTAGAGCGGCTCACGACAACGGCGGCGACGACGACGACGCGCATGGCCATGGCGACAAGGAGTGCTTCCTGAATACTCTGATGAGAATTCAGAAGGAAGGTGATGATCTTGATGACACTCACCATGGCAACCGTCAAAGCTGTCATTCTTGA
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| Protein seq | MDLMKSNPLQGSPWSLLNLLVLIIVAAMICGELCRRRRRRRGDENGGATRLPPGPWRLPFVGSLHHLAVMRPRGVVVHRALAELARRHDAPVMYLRLGELPVVVASSPEAAREVLKTHDAAFATRAMSVTVRESIGDKVGILFSPYGKKWRQLRGICTLELLSVKRVRSFRPIREEQVARLVDAIAAAAASSTAEAAAVNISRQITGPMTDLALRAIMGECFRWREEFLETLAEALKKTTGLGVADMFPSSRLLRAVGSTVRDVKLLNAKLFELVECAIEQHREQIRAAHDNGGDDDDAHGHGDKECFLNTLMRIQKEGDDLDDTHHGNRQSCHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 26155740 | 26156178 | + | OsNip_06t0642500-02 | OsNip_06t0642500-02,OsNip_06t0642500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.114891 | 0.072878 | 0.180027 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0184900 | SBH | 0.000000 | 0.444793 | 1.521383 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43510 | RBH | 0.066147 | 0.101168 | 0.039454 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0642500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023930 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023740 | RBH | 0.119304 | 0.0 | 0.429621 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023920 | RBH | 0.874472 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023480 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023940 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0436600 | SBH | 0.0073375 | 0.0298495 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0419400 | SBH | 0.1224175 | 0.04184 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023870 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023810 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023490 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0024140 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023730 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023540 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023750 | RBH | 0.0 | 0.0 | 0.000000 |
