Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0612900 | OGI:06069410 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:24494908-24500993 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATCCTTAAGTACTCTTTCATTTGCAGAACTTTTTGTGTATACTCAACTGCATCAAGAGGTATATACTCTTTCTAAGAAAAGAATGGCAAGATAAAGAGCTGAAATTGCAGAGTAACATCACTGCTACTCCAGTAAACACTGAGAGGCAGAGTGTACATGTAAACCAAACTCATTTTCCCATTCAACTGCTACTTGCCATGCTAATTTGTACTAATTACTAAATTGAGCATTGAAAGGATCAAAGAATTAAATTAGCCCAAATTAATTATCTTCCACCACCTTAAAAAATTAGAGAGATTGCCATGTCGTTGTCACTCACTTGTCAGGCTGCAAGGTTGAAGTAGATGGTGTAGAACTCGTCCCTCAAGGTGAACAATGGCTCGAGGAGGAAGCTCCTCCTCACGCCGCTGGCGAAGAAGCTGATCGCATGATACCGCCGCAGTGGCTCGGCCTGCGCGAAGCTCGCCGCCTGCTCGAATCCTGCGGCTGCGGCGGCGGCGGCGCCGCCGCGTGTCCTGCAGCCGACATGCACCTTCGCGCCGGCGCCGGCGACCAAGAAGCACCCCGGCTTGCTCCCGAGCTCGAGCGAGACGGAGCCGGGCTTCCCGTCGAGCCCCGGCGCGACGTTGAACAGCGTGCTCGAGCTGTTCCCGGCGCGCACCACGGCGAGGCCGTTCGACACCGCCGTCCCCGGCAGGCCGAACGGCTCGATCGTCGCCGCGGCGACCTTGAGCCTCGCCGCGCCTTCGCCGGCGCCGGCGCCGGCGCGCTGCCGCAGCTCGGCCCTCGAGCCCGGCGGCACCACCCTGAACGTGGCGCGCACGGCGGCGTCCGTGCCGCCGGCGCCCTCGGGCCGCTCCAGCATCGCCAGGGAGGTGTCGTTCACGGTGGAGAGGAGCATGGTCTTCCCGCCGGACTCCTGCGTGAGCGTGACCAGCTGGGAGTTGTACGAGGCAGGGACGGGGGTGATCCAGTCCGACGCCGCGGTGGCGGCGCCGCCGGTCTTCGCGTCCCAGTCGCCGGTGGTGAGGCCGGCGAGGAGGAACGGCCCGAACAGGATCGCATTCAGAGATGCTACCTGTGGCCGATCGTCTGAAGATGAAGATAAACCATTTTGCAGTCAATCTCTTGTGAAAATTCTGGTTCATCTTAATTAGTAGTAATTACCAATTTACCATCTTAGATGCATTGGATTTTGGTTTGCAATTTTTTTGCTATCCATGTAACAACCAGTTTTTTTTTCAGCGGTTCAGGTCCCCTATTTTTTTCAATCTAAGCACATGCAAGCCCCTAAGGCTGTGTTTAGATCCAAAGTTTGGATCCAAACTTCAGTCATTTCCCATCACATCAACCTGTCATACACACAAAACTTTTCAGTCACATCATCTTCAATTTCAACCAAAATCCAAACTTTGCGCTGAACTAAACACACACTAATTCCAAATGAGAGCACGTATTATCCTGAATTCTATTTCCAATTTTGTACATTTTTCAAATTTTTCAAAAAAAATTAATATGGTGACATTTCGATTTTTTTAGGAAAAAAAATTAAACAAGGTAGAGGTGATCTGGATAATGAACATAAGTAAAATAGATGTGAAAACAATTAATTGATTGTCAACTTAGAATTGACACTGAATTCAATATTAGAATTTGGGATAAAATTTTGGCAGGTATGAACATTTCTTGTACCGATAGTAAAGCCCAAATTCACCGAAATGTTGGTGAAATGCAAAATCACTGGATAGTACTGATTCTGACTTCTGGATACTGGTCTGTTGAAGTAGGGAAAGCAAGTAGTATTCGATTGCTTTGATATATTGTTGTGTGTGGGCTTTGTTACTGATCGATAAACCTTTGATTTATTTCTTCAAGCTGAATAGAAAATAAAACTCAAAATTCCATACCTTTTATTGCTTCTGTCCTTAGGTTAATTGGGAACTGGAGTAGCAAGTGATCATCACCACTATCCCACTGCTTGCTGATTGTGAGGAAAGTCCCTGAATAAGATCGAGATTGAGGCAGAGTTATATCTGTAGTTCTTCCAACATATTATGGGCGACAAATTACCGTGCTCTCTCAATTCTTATGAGCATACCTGGAGATGCTAATTGCAGATCTTTGTCATTCAGAGTTGCTTTTGCACCATTCATTGATGTCCATGATGGTATTCTCACATTCAGTGTTGCATATTGCCCGTTTGTCTGTGTCACAAAAATCAAACTGATTAAACTATGATCCAAGACTAATCATTGTTGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACAGTGAAAATCCAAGATAAATTTTACCTTTGCAGCAGAAATGGAAAGTGAGACTTGAAGATACTGATCTGATGAGCTGAGGGGCTTCACTTGTTGAGTAACAGTAAGACCTGCAGTTCTCCAGTTAAATGTGCTCGGTATGTACTGAATAATGTAGAGCCCTGGCTTGTCTCCTTTCTGCTCAAAGTAGATAGAATCCCCCAGCTTGGAGAATGATTCTATCCCTGAAAATAAAACCAGACAGTAGATAACATTACAATCCTACTTGTTTTTTCAGAGCACTTAACATTATACTGTTCAGTTCTGAACTTCTGAAACTAACTGTTCACTTACCAGTTCCATAACAACACCAAAATGAATTGTACTGTGTTCCCCACCCATGGTAGCTTACTGCTTTAGATCTTCCAGGGCCCTGGGGTAGCATGTAGATCATCACACCAGGATCTCTTCCTCTCTGAATGCTTAGGACACCATTTATCAGTGCTCGCTCGTAGTAATCTGCATACGCAATTTCCTTTGTCCATCTGAATAGGTGGCGAGAAACCTGCATACTTTGTATTTTCACTTTGTATCTAATTCTAGGAAAGAAAAATGGACTTAGGAATTTGATCATTGATGATCATGAACAAATAAATCACCTTAAGCATGTTGTAGGTAGTACAGGACTCCTCAGTCTCAGTGGTTAGAGCCTCAGCTAAATGTTTTGGATTTGACCTGACAAAATCCATTTTGGGCATTAAGTGACCGAAAAAGATTTCTGTGAACTTCAACCATTCAAGTTCATTACCAGAACTCACTGACAGATGTGCCACCAGTGGCATAGCTATGAGAAGAATTAACTATGTCCATGAAGAATGTTGCAATCTCCTGTTTCATAAATAGGACTTATGGTCAGATGCACCAAGATTCATTCAAGTTTCACCACAAGTATTGAAGTGTACAATTATTTGCAAGAAAGCACACACTGCAAGACATAGTAGCTTTTCAGTAAAACTATAACGGACACCCATAGAAGTGGATTATAGTAGCAACATCATGAAGTACCATGGACCATGTGTCTCTCTTCTCTCTTGAAATCAACATGCCCCATAAGTTTTACCTTGTAAAGAGGATCACCAGTAACTTCATATCTCATTTGCCCACCGATGACAACAGGAATGTGTGTATTTGCATGAAAACCCGAAAGACTGTCAGCCTGAACATCAAAGATTACGAGTTATATTCTGTCAGATTACGAGTTCTAGCTGGATTAGTTGTACAATAAATTACTAATTACAAAGTGAATAGCATGTAGGAGAACATAGAGTGCCATAGGGGAATTAAGATCTTCAGACCTGAACTGCAAGCAATCCTAGAAAGCAAGGCTTGTCGAAAAGATGAGCCAGCACCAAATGCCTCTGGTCTTTCTGCCCAAAATTGGAGATCATTCATAATAGCAACACAATTAACTCGCTGAAATAAAACGTGCTTCCAATCAGCACAAATCAAGATTGACAAGAACGATTACAGTAATGGTGTACAGCTGGTAGAGGACGTCGTTCATCCCGCCGGTCTCCTCGTTGAGCGACGTCCAGTGCCTCTCGATGGTGTACCTCTGGATGACGCTCCTCACGCGGCCGGCGAAGTAGTCGGCCATGGCGACCACCATGCCGAGCGCCTTGCCGTTCCCGGCCACCGTGTGCTGATCCAGCAGGCCCTGCATGATCTGCACACGCGATGCAGAGGAAGAAGAAAGGCACAGGAGATCTTCATGACTTCATTCAGACATTTGCACGAACAGATGAGATTCATGGCCATGGTGGAGATGCAGATGCTTTGGGTTGCGTTGCGTGCCTTGTGGATGGTGTAGTAGGGCGCCCAGACGGGGCGGATGGCCTCGAAGCGGTCGAAGAACTCGGCGGGGAAGGCGGAGAGGTAGCCGGTGCCGGCCGCCGCCTGGCAGTCGTGCAGCGCGTCCACCACCGCCGCCATCTTGCCGGCGAGCGTGCCGTTGTGCGTGCTCGCCCACATCTTCGCCGCCGCGCTCAGGTAGTGCCCTGCGCGCCAAATTTTGTGTTTTACTAGTAACTTTTGTCCCGTTTAAATTTGTTTAAATGGTTCCTAAACAATTTATATGCACAAAAATCTGGCTGCATTTTTCATGAACCAAATTTTAAATTTCTACTGCCGAATAAAATTGCTTGAGTTTTGACCCACTTGATGAAAATTTAAACAAAAAAGTTAGTACTACATTGTAGCAGAGCTATTTTTACATCTATGTAATTGGGCCAGAAATTTAAATCAAATCCAAGCCCTCGAACTTGAATGGGCCGGAATTACGGTCCATCCGTACTAGGCCCAACTGATAAATGGGCCTAAGTTGGGCTCTAATCTAGTTTGGGAAAGAGTAAATTACGGTCCATCCGTACTGTATGTTTTTACGATCAAAGTTGTGAAAAACCACAAGTTATAAGGTATGGCATATTATCACAGGTTTTATGATCTCAATACTTCATAAAACCCATCTTAATTGAAATCTTAACAAATTTAGAATATCTTAAACAAAATTTTGAAAATAGTAAAGAATTAAACTATCAACCTTACTCAAGAATTTATTAGTTAAAAATTTATATACACTGTATATTTCAAAAATTTCAATATATTCATGTTTAAAATGTATAAGCGTGAAGCTTTGTGAAATTTGAAAATCATATTATAAGTTATTTTGACACTTTTTCCTAATCAAACATTTATAAGTATGACTAAATTTCTAGAAAAATATATAAACATTTTCAATACAAACAAACATATTATTATAATATATTAAATGTTAGTTTTAATTGAAACTAATTTGGTTTTTGTAGATGTTGTTAAATCTTTATATAAATTTAATCAAACTTAAAGAAAGTTGATTAAACAAAAAAGGTCAAAGCGATTTATCATATGAAAACGGAGGGAGTATGTAATTTTTCTGTAGCTTTAACCATAAAACCTTTTTTTTTCTAGGGAGTATGTGGATTTTCTATAACTTTAACCATAAAACTGACCTGGTTTTTCTGAAATTTAGTCTCTATGGAAACACTAATCTAACATGTGGGACATGGCCATGGGTTAGTTGGAAGCTGAAGGCGTGGGGGCGTTGTGGTTTTTCTCACCGACGAAGTGGCCGCGGAGCTCGACGTCGGGGCCCTCCCATCCGCCGTACGGCTTCCCCGGCGCCGGCAGCCCGGCCTGCGTCCTGAAGCTCCACACCAGCCTGTCCACCTCCAGCAGCAGCAGGTACTCCAGGTTCGTCTGCTGCGCTCGCCCGTACACGCCGTCGCCGCCGCCGTCCATGTCCAGCCGCACGTCGTGCAGCGACACCTCCTCCAGGAACCCAAACCCTCCGCCGCCGCCGCCGCCGCCTTCGTCTCCGGCGACGGCGGCGCCCTTGAGCGACCTGTACAGCATCGCCCAGTCGAACTCCGACGCCGACGCCGCCGCGAGCGGCATGAGGTCCATCCACGCCGCCTCGTCGGTGGGGTTGAGGTGGTCGCCGTGGAAGTACTCCTCGCGCCACCGCCACTCCGCCGCCGACGACGACTGCAGCCGCGCCCGCACCGTGTGCGACGACAGCTGCGTGGGAATGTTCGTGCACTCCTTCGCCACCGCCACCGCCACCACCGCCACCACCATCACCACCGCCGCCGCCGCGCGCCGCCGCGCCATTTGCTGGATAAGGCGCGCCGCGACGCACGCCGACGCCGAGAGCGAGCTCTCTCGCTCACAAGGTAAGAAGAATAGCGTGTACTACACAGGCACAC
More
|
||||||||||
| CDS seq | GCGAGAGAGCTCGCTCTCGCCGCCGCCGCAGCCGCAGGATTCGAGCAGGCGGCGAGCTTCGCGCAGGCCGAGCCACTGCGGCGGTATCATGCGATCAGCTTCTTCGCCAGCGGCGTGAGGAGGAGCTTCCTCCTCGAGCCATTGTTCACCTTGAGGGACGAGTTCTACACCATCTACTTCAACCTTGCAGCCTGA |
||||||||||
| Protein seq | ARELALAAAAAAGFEQAASFAQAEPLRRYHAISFFASGVRRSFLLEPLFTLRDEFYTIYFNLAA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0612900 | OsNip_06t0612900-00 | Chr06 | 24494908 | 24500991 | - | RAP2018-11-26 | ||
| CDS seq | GCGAGAGAGCTCGCTCTCGCCGCCGCCGCAGCCGCAGGATTCGAGCAGGCGGCGAGCTTCGCGCAGGCCGAGCCACTGCGGCGGTATCATGCGATCAGCTTCTTCGCCAGCGGCGTGAGGAGGAGCTTCCTCCTCGAGCCATTGTTCACCTTGAGGGACGAGTTCTACACCATCTACTTCAACCTTGCAGCCTGA |
|||||||
| Protein seq | ARELALAAAAAAGFEQAASFAQAEPLRRYHAISFFASGVRRSFLLEPLFTLRDEFYTIYFNLAA |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0612900 | OsNip_06t0612900-01 | Chr06 | 24495481 | 24500993 | - | IsoSeq | ||
| CDS seq | ATGCGATCCTGTTCGGGCCGTTCCTCCTCGCCGGCCTCACCACCGGCGACTGGGACGCGAAGACCGGCGGCGCCGCCACCGCGGCGTCGGACTGGATCACCCCCGTCCCTGCCTCGTACAACTCCCAGCTGGTCACGCTCACGCAGGAGTCCGGCGGGAAGACCATGCTCCTCTCCA |
|||||||
| Protein seq | MRSCSGRSSSPASPPATGTRRPAAPPPRRRTGSPPSLPRTTPSWSRSRRSPAGRPCSSP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.470416 | 2.841844 | 4.091440 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0195500 | RBH | 3.920737 | 2.549784 | 9.697628 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41020 | RBH | 1.044837 | 0.959505 | 0.597850 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0612900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022300 | RBH | 0.519637 | 1.908971 | 9.737727 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022150 | RBH | 0.0 | 0.189425 | 12.250216 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022250 | SBH | 0.0 | 0.0 | 20.250563 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021970 | SBH | 0.450361 | 0.051595 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022380 | RBH | 5.250627 | 0.000000 | 16.939339 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0385700 | SBH | 7.732355 | 9.3066865 | 7.126475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021830 | SBH | 0.711792 | 0.0 | 1.087989 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0365600 | RBH | 6.3390845 | 4.4831255 | 22.08232 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022290 | RBH | 0.076879 | 0.081335 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022210 | RBH | 0.131176 | 1.211096 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0021900 | RBH | 2.946278 | 2.071784 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022570 | RBH | 0.473838 | 0.000000 | 1.633723 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022160 | RBH | 0.515214 | 0.997244 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021930 | RBH | 0.398212 | 0.277946 | 12.873714 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022130 | RBH | 1.166034 | 1.987115 | 17.607481 |
