Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0609500 | OGI:06068820 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:24268868-24273358 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCAAAATAACTGACGAATCCAAAGCTGGAAGACACGAAAAAGGAAGGAAAGAAACCTAAGCCCATCGGAAATCTCTCCTCCTCCCAGCAAAGAGGAGGTGGTGGAGATCTCCCAATCCGCGGGAATCACTCGCTGTTCACCCCGATTCGGCCTCCGCTCGAGCTCTGAATCTCGGGAGCTCCTGATCTGGGTGCGTGGTCCTGTCCATTGCTGCTGGGTTCTTGGCGAATTTAGTTGGGGATTCGTTGGTTCTTGGGGTCAGTTTAGGTTCTCCGGGTTATAGACTTTGCTTGCGAATTGCTTCGGGTGAAACTGCTTGCTGGATTTTGTAGGGGAAATCCTTTGTTATTGCTGCAGAAGAGAGCGCCATTTGGGGAAATGCTCGTTACATTTATGTTTACTTCGGCGATTTTTGAGAGGCTCGAGGAAAGCTAGATGTGAGTGTGCAAATAGGGTTGAGTTTCTCATATATCGTGTTGATTGTATTGTGTGATAAGTAGGTTTTGGCAGCTGTTCATTTTTTCCAGGATAGATTCGACTCCAACTCCGCATCTGCTTAATCATTCTTAGGAAAAATGTAATGCTGTTTCTTTGATTTGGAGTGTGTATGGTTATCCCTAGTTTTGTTAGAGAACTTATATTGCCCTTGTTAATACTCTGCTAGTTTGTGTGCTTGGGACGTCCTTATTCCCCACAAATTCTGCTGTCAATTGATGGAGGCATTTGATGTAGTATAAATCTCTGACTAGTGCAAAGAAGCATTGCTTTGAAGTGGCAAAGGTATTACTGTGGACTGTTATTGAATCCCATAAACTTAAGTGGCAACATAATTGTTGAAGCTTTGGTTCTAACAACCACAAGGATAAGTGTTAGGAACATACTAGCATATGGTGTCTTGTTGCACAACTCTCCTGCGCGTTCGAGAAAAAAAAAATTATGGTCCTTATGTAAAGAGACAAAATGCAGATATCCTGTTTGGTAGAAGTTTGGCACCATTCCATACAACAGCTGCCACAATTATTTCACCAATATGACTTTATCTCAACCTGCAGGCATACATTCATTTTATATTTTAGTCTGCCATTGCCAGTGCAGAACTATCTTGTGTGTGCATTATATGCTGGAGAAAGGCTTCACCAGTAGTAAAAGTTCATTACACTTACCATTCAAGCACAGACATGGCACATGCTAAGGAAATCGAAAACATTAGTTCCTATTTTCACTTCATATGGCTCCTTATACCACTTTTTTGTGCTATGGTGGAATATTGTTTTAATGTTTTGTGAAGATGAGTATTTGATCTTCTTACCTTATTTCACAGCATGGTAATTCAGTTTATATATGTCTTGTGCAGAGGATGCCAAATGTATGAACCAAAGCCCTTCTCAAGCATTGTACTAGCTCACAACGATCCAGTTTCCCACAATCAACAAATTGAACGTATTAACAACAATGTAGTATCTAATAGTGGTGGGAACAGCTCAAACAGCAACTTTGCCGCCAGACAGCGCTTACGGTGGACTGATGACCTCCATGATCGTTTTGTGGATGCTGTAACACAGCTTGGTGGACCCGACAGTAAGTTACTATGCCTGCTTAATTACTTTTCTCCTAGTACAAAAAATCCTGTGCTTGCTCTCCATTAAGTTTTTTGTTCACAAACCCTGTGATGCTAAATACATTTATGCTAACGGACTATCTTTCAATTCTTATTTCAGGGGCAACTCCGAAGGGAATTCTTAGAATAATGGGTGTTCAAGGGTTGACCATCTATCATGTCAAAAGCCATCTGCAAGTAATTGAGCTTGAGATTCTCAATACCTGCATATAGTCTATTCTCCAGCTTATGTTCTAGACTTTACTGATTGAATTGCTTGTTTCTTCAGAAATATCGGCTTGCTAAATACATTCCAGATCCCACAGCTGATGGTACGTAATTGCTGTTGTGGAACATAAGAGTTTGATATAGATGTTACAATTTTCAAGTTAAGAAATAAGGATTTAATTTGTGTAGGTGCCAAGTCTGACAAGAAAGATCTCGGAGATTTGCTTGCTGACATTGAAAGCTCCTCGTAAGTTATTTCTCCTTCCTTCAAAAAAAAATGCATGTTGGTATGTATCTGGAGCCTATGTGCTCTTCTAGTAGTTGTGAACTTCCACTATCTTTTCCATTCACTTAGCTGTTTGTGTCCATGGGATTTGATGGGTTCCTCTTAAGAAAAATAAAAAAAATCTAATTCTATTGCCATATTCTACTAGCACAACAGTCTGGTACAATTTGACGTGGAGCCGCTCCACACATACCTATATGGTCATCCTCTGTCGCATAAACTTTTACTTCTCCAACACTGAATTTAAGTATTCATTCACAAACTATTATTATTCTAATTGTGAGTTTAGATCTCCCAGCACCACATAGGTATGTCCAGTAATGGTGAGAAAGCATAGCTATTACCTCCATGAGGAATTAGCCCCATGACACGTGACCATGAGGACTTCCTGGTTCATCTTCCGTTCGCATTCATCACCCTAAATAAATTCTAAGGTTGCCTCATTTTGTACTTCATAGCATTGCATGTACATGCCAACCAATTATTATTTTCTTTTTTCTAATGATAAACCTGTTGTTTATGCTGATAAACTGTTCTGAATTTTCCTTCTTCTGATCATTGTGGTTAAGCAATACAAATGGAAAGCGTCTAGCTCCATAGGTCTGTAGCAATATAGGTTATCCATTTAGGGCATAGAGCATTGAAAATATTTCTGTTGTGCAGAATTTTCAGATAGCAATGCACACTATGTGCATGAGAACTTCTAAAGTTGAAACTAACTGCATCACGTTGCTTGTTTACATGCATATCACAAATAAATTGAACAGCTGAAATGATATGCTGCTGCATTAAAGAAACATAAATACAATATGCACTTTTTCTGTTTTTCGTTATCTTGTTTCCAGGCATCCATTCAATATTGTTCAACAAATCTGTACTTATTGATGTAGTATTCGAAGTAGAAAGTTCAATTTTGCATTGTCTAGTTTAAATGCATCCATCAGATACTACTTAGCAATTCTTTACTCCCAGAAATCTTGTTTAAGGATCGAGTAGCCAAAGTAGGATGTTGAGTTCTTAACAAAGCATACTTATATATGAAGGGGAATGGAAATAGGGGAGGCTTTAAAGTTGCAGATGGAGGTGCAAAAGCGGCTACATGAACAATTAGAGGCAAGTTGCCTTTCGGGCACCTTCTTTATGTCTGACTTCATGTTTGTACTTCATCTCAATTCTGCATTTCTGCTAATGCTGTCAAATAACACGTGTCCTTTAACATTGTGTTGTTTTCTCTATTGGATCGGATAGTCTAGTTTTATTAAATTGCTTACAGACACGCTGCTTCTAACCTCGTACATGGATATTGTTAAAAAATTATATAAGCTCTTTCCTGTAACTAAAAACAATTCTATACAGTGACATCTTCTGTTTATGTTTGACTTCTCAACTGTACTGCTTCAAAATAATGTAACTAGATTTGTTTCATCTATGCATTATTTCAGTCATCAGGTGTTTTCACTGATAGTGCCAAACAAGATTTGATAACGCAGAACATGTCTACAGGTGCTACTCTTTCCAATTCCAGAGAATGTAACTTACTGCTCTTTCAAAACATGTCTACAGGTGCAAAGGCAGCTACAGCTCCGGATAGAAGCCCAAGGAAGGTACCTCCAGAAGATCATTGAGGAGCAGCAGCGGCTCAGTGGTGTGCTGGGTGAATCAGGCAAGTTAGGCGCCCTGGGACCAGCTCCAGGGGAGCCATACCAGGATTCCAACAAAACCGACCCCTCGACCCCGGTACCGACTTCCGAATCCCCAATCCGCGACAAGGCTGGAAGCGGCTTGTTCAAGACCATTTCTTCGCACGACGACTGCCGCGAGCCTTTGACACCGGACTCCAGCTGCCGTGCCGGCTCCCCTTTGGAGAGCCCCCCCAGGGCTAGCAAGAGGATCCGGGTCAGCAGCGACATTGATCATCGTGGGAACAATGAGTTCCCCCCTCCTCTCAAAGTTCCGGAGCCAAGTTCAGGTTCAGATTTCCGACAGGAAAGCTCAGTGTTATTATCATCCAGCGCAGTGCACTTCGATTCTTTGGAGAGCCTGGATGCAGATGAAAATGTCTTCACCAATGGTTCAGGCAGTGATGATTGATTTTTCATCTGTGTAGGGGCAGGGCAGTGATGTTTAGAGGACTTGCTAGTTATCTCTTCAGTAGAGCTGTTGATCTTAGTGAGGCTGTAATGCTGTAAACCCAGCCATGACTGTTAGTTGTTATCTACTGTTCAGTGCATGTTTGTAGCTTATACTTATTCAATCAGAGATGTGCAGTGTGCACATCACTTTACAGTTCATGTAGGTCTGGAAATGTAGTAAGGTGAGAAGAACATAAAGATATGATCTTATTTTCGTTGAGCATGCAACTGAATTATAGCATTTCTC
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| CDS seq | ATGTATGAACCAAAGCCCTTCTCAAGCATTGTACTAGCTCACAACGATCCAGTTTCCCACAATCAACAAATTGAACGTATTAACAACAATGTAGTATCTAATAGTGGTGGGAACAGCTCAAACAGCAACTTTGCCGCCAGACAGCGCTTACGGTGGACTGATGACCTCCATGATCGTTTTGTGGATGCTGTAACACAGCTTGGTGGACCCGACAGGGCAACTCCGAAGGGAATTCTTAGAATAATGGGTGTTCAAGGGTTGACCATCTATCATGTCAAAAGCCATCTGCAAAAATATCGGCTTGCTAAATACATTCCAGATCCCACAGCTGATGGTGCCAAGTCTGACAAGAAAGATCTCGGAGATTTGCTTGCTGACATTGAAAGCTCCTCGGGAATGGAAATAGGGGAGGCTTTAAAGTTGCAGATGGAGGTGCAAAAGCGGCTACATGAACAATTAGAGGTGCAAAGGCAGCTACAGCTCCGGATAGAAGCCCAAGGAAGGTACCTCCAGAAGATCATTGAGGAGCAGCAGCGGCTCAGTGGTGTGCTGGGTGAATCAGGCAAGTTAGGCGCCCTGGGACCAGCTCCAGGGGAGCCATACCAGGATTCCAACAAAACCGACCCCTCGACCCCGGTACCGACTTCCGAATCCCCAATCCGCGACAAGGCTGGAAGCGGCTTGTTCAAGACCATTTCTTCGCACGACGACTGCCGCGAGCCTTTGACACCGGACTCCAGCTGCCGTGCCGGCTCCCCTTTGGAGAGCCCCCCCAGGGCTAGCAAGAGGATCCGGGTCAGCAGCGACATTGATCATCGTGGGAACAATGAGTTCCCCCCTCCTCTCAAAGTTCCGGAGCCAAGTTCAGGTTCAGATTTCCGACAGGAAAGCTCAGTGTTATTATCATCCAGCGCAGTGCACTTCGATTCTTTGGAGAGCCTGGATGCAGATGAAAATGTCTTCACCAATGGTTCAGGCAGTGATGATTGA
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| Protein seq | MYEPKPFSSIVLAHNDPVSHNQQIERINNNVVSNSGGNSSNSNFAARQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRLAKYIPDPTADGAKSDKKDLGDLLADIESSSGMEIGEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGRYLQKIIEEQQRLSGVLGESGKLGALGPAPGEPYQDSNKTDPSTPVPTSESPIRDKAGSGLFKTISSHDDCREPLTPDSSCRAGSPLESPPRASKRIRVSSDIDHRGNNEFPPPLKVPEPSSGSDFRQESSVLLSSSAVHFDSLESLDADENVFTNGSGSDD |
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| Function | Myb family transcription factor PHL7 [UniProtKB/Swiss-Prot:Q9SJW0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0609500 | OsNip_06t0609500-01 | Chr06 | 24268909 | 24273342 | + | RAP2018-11-26 | ||
| CDS seq | ATGTATGAACCAAAGCCCTTCTCAAGCATTGTACTAGCTCACAACGATCCAGTTTCCCACAATCAACAAATTGAACGTATTAACAACAATGTAGTATCTAATAGTGGTGGGAACAGCTCAAACAGCAACTTTGCCGCCAGACAGCGCTTACGGTGGACTGATGACCTCCATGATCGTTTTGTGGATGCTGTAACACAGCTTGGTGGACCCGACAGGGCAACTCCGAAGGGAATTCTTAGAATAATGGGTGTTCAAGGGTTGACCATCTATCATGTCAAAAGCCATCTGCAAAAATATCGGCTTGCTAAATACATTCCAGATCCCACAGCTGATGGTGCCAAGTCTGACAAGAAAGATCTCGGAGATTTGCTTGCTGACATTGAAAGCTCCTCGGGAATGGAAATAGGGGAGGCTTTAAAGTTGCAGATGGAGGTGCAAAAGCGGCTACATGAACAATTAGAGGTGCAAAGGCAGCTACAGCTCCGGATAGAAGCCCAAGGAAGGTACCTCCAGAAGATCATTGAGGAGCAGCAGCGGCTCAGTGGTGTGCTGGGTGAATCAGGCAAGTTAGGCGCCCTGGGACCAGCTCCAGGGGAGCCATACCAGGATTCCAACAAAACCGACCCCTCGACCCCGGTACCGACTTCCGAATCCCCAATCCGCGACAAGGCTGGAAGCGGCTTGTTCAAGACCATTTCTTCGCACGACGACTGCCGCGAGCCTTTGACACCGGACTCCAGCTGCCGTGCCGGCTCCCCTTTGGAGAGCCCCCCCAGGGCTAGCAAGAGGATCCGGGTCAGCAGCGACATTGATCATCGTGGGAACAATGAGTTCCCCCCTCCTCTCAAAGTTCCGGAGCCAAGTTCAGGTTCAGATTTCCGACAGGAAAGCTCAGTGTTATTATCATCCAGCGCAGTGCACTTCGATTCTTTGGAGAGCCTGGATGCAGATGAAAATGTCTTCACCAATGGTTCAGGCAGTGATGATTGA
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| Protein seq | MYEPKPFSSIVLAHNDPVSHNQQIERINNNVVSNSGGNSSNSNFAARQRLRWTDDLHDRFVDAVTQLGGPDRATPKGILRIMGVQGLTIYHVKSHLQKYRLAKYIPDPTADGAKSDKKDLGDLLADIESSSGMEIGEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGRYLQKIIEEQQRLSGVLGESGKLGALGPAPGEPYQDSNKTDPSTPVPTSESPIRDKAGSGLFKTISSHDDCREPLTPDSSCRAGSPLESPPRASKRIRVSSDIDHRGNNEFPPPLKVPEPSSGSDFRQESSVLLSSSAVHFDSLESLDADENVFTNGSGSDD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0609500 | OsNip_06t0609500-02 | Chr06 | 24268868 | 24273358 | + | IsoSeq | ||
| CDS seq | ATGAGTTCCCCCCTCCTCTCAAAGTTCCGGAGCCAAGTTCAGGTTCAGATTTCCGACAGGAAAGCTCAGTGTTATTATCATCCAGCGCAGTGCACTTCGATTCTTTGGAGAGCCTGGATGCAGATGAAAATGTCTTCACCAATGGTTCAGGCAGTGATGATTGATTTTTCATCT |
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| Protein seq | MSSPLLSKFRSQVQVQISDRKAQCYYHPAQCTSILWRAWMQMKMSSPMVQAVMIDFSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.658108 | 0.761792 | 8.753102 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g40710 | RBH | 0.355604 | 0.409397 | 1.807718 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0609500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022050 | RBH | 0.239113 | 6.451911 | 5.515121 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021900 | RBH | 0.000000 | 2.234843 | 0.750433 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021990 | RBH | 0.000000 | 1.423666 | 6.541276 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021710 | RBH | 0.045107 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022150 | RBH | 1.697961 | 1.948701 | 9.164382 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021570 | RBH | 0.000000 | 0.304265 | 0.976629 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022020 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0021950 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0021640 | RBH | 0.000000 | 10.171144 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022310 | RBH | 0.422849 | 0.151145 | 0.777830 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0021890 | RBH | 0.147675 | 6.867442 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021680 | RBH | 0.298068 | 1.681596 | 2.523445 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0021900 | RBH | 0.000000 | 0.000000 | 6.007186 |
